Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGACCACCATAGATCCAACAAGCCACTTGTACCTTCACCCATCTGATGGAAGCCACTTTGCAACCATAGAGAAGCTCCAAGGATCTTCAAACTACAGATCTTGGAAGCGTTCCATGGAAATTGCATTAGCTTCAAAAAGAAAGCTTGGCTTTGTCACAGGGGCATATAAGAAGGACACTGATGATGCTGTGAAGGCTGAACATTGGGAAACTTGTAATAGCATGGTTATATCATGGATCATTGGGACTGTTTCTGAGTCAATAAAGAAATCAGTTATGTTCCTGAATAGCTCTGCTCAAATATGGAAACAGCTAGATCAAAGGCTGTCCTTGACTAATGGGTCAAGGAAATACAAGCTCAATAGAGACTTGTATGAAACCAAACAAATGGGAAAGCCCATTAGTGATTACTACACAACCATGACAGGGTTATGGGAAGAACTGGAATCACTGAATGATTTCCCCCCTATCACTAATGTAACAACAGAAATCAATGCTTTTATACAAGCTTTGACAAAACAGCAAGAAGAGCAGAAGTTGTTTCAGTTTTTGAATGGTATAGATGATCACTATGGACCTCAGAGAAGCCAACTCCTCATGATGACACCCCTCCCTTCTGTAGAAACAGCTTGTAGTTGTCTGCAACAAGAGGAATCACAGAGAGAGCTATTCATAAATGTCAAGGAGGAAGCTGAAGGTCTGGCAATGTTCAGTAAAGGAGATGACACTTCATGTTCAGCATGTGGAAAGCCAGGTCATAGCAGAGAAGTGTGTTGGTCAGTGGTTGGCTATCCAAGCTGGCATGCCAAGAACAAACCACAAACCAAGAGCACATACAAAGGAAAAGGAAGAATGCAGGGTGGTCAATCTAAATGGAACAAGGGAAAACAATCTGGTGGTAACCAGAAAATTGCAGCCAATGCTCAAGAAAGTGGCTCAAGCACAGGATCTGCACCTTTTCTCACCCAACAACAGCTGGAACAACTGTTTAGAAGATTACCCCCTCCATCAAAGGGAGGATCAGATACAGATGATGAAATGGATATGAATTATTCAGGTATGGTGTCATGTTATTTTGCTGATTCTGTAAGTAGTGACTGGATAATTGACTCAGGGGCATCTAATCATATGACTGGTGATTATAATGCATTGATCTGTCCTGTTAAGAGTCAAAATAATCCACACATTAACCTACCAACTGGAGAAACATCTAGCATTTCTCATATAGGAAATGTAAAACTGAAAAGTGATCTAGAACTGAAGAAAGTATTGTTTGTTCCTGCATTCAAACATAACCTTCTATCTGTAAACAAGTTGGCTGAAGATTCAGACTGTAAAGTCAATTTTTACTCTGGATATTGTGTGATTGAGGAATGCAAAAGTAAGGCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTAAATAGCAGATGTCTAAAGGCCATGGAGTGTAGAGAAGGTGGGCAGCCCATCTCCTTGGTCCAAACAACAGTGCAGCATAGCCCAATCACATGAAGTGACAGCTGCACATGATCCCAGATATTCTCATTCCTAGGTTACCGTTACTTTGTCTTTTCCTAGGTTGATATGCTAATCATTAGCTGTCATTATTGTAATAGAAAGCTGGCGGCTCAACCCTAGAGGGAGCCTTAGTATTTAAGCTTGTATTACAGCTCTTGGAGCACACACAATCAATGAGAGAAAAATCTGGGTTGAACAATTGCAATACTCTTGATATTTGCTCAATGAACTAACTGATAAAATACAGTTTAGTCATCAGGCTTGGTTCATATCATCATTTCTGTATCACGAGGAAAGCTTTCTCTTGCTATTTGCAAAGTTTGATATTTTTGAAAATTTTGATTTTATTTGCATTTAATTCTCGCATATATTGGTTCTTTATTTTGATTTTATATGCTCTTTTCAAATTGAATGTTAATCTTGGTAACTATACTGATACTAGTATTACATCCCCACTGACTTTAGCTACAATAGATGCATATTTTCTTAGACGCATAATTCTTTATTGTTGGTCCTGCATTGTCTTTTCTAGTTTCTTCTTCTTTCTGAATTCTTTGTTGTGGTTTGTGGTTTACTCGTATCCTAGGGCCCGTTCGTTATCATTTTAGAAGAGTTATAAAGCTAATTGATCATACTGCTACCTGACAAGTCCACTGTTTTTGGTTCTGTGTAATGTGTTTTTCACAATCGGACATCTGGCTAAGATAACGAGATGTCTGTTTTGTTTCTGTTATTTAGGTCTGATGGAAAGGAACTTACGGTTGATAACAAGTTTCTCAAGGCTAACTACCCCCATCTGGTAATTTTCTTTCAGTTTCATGTTAATAATACATTGGTGTTCACTAAATCACCTTAAGAGGACATGTTATTGGTATCTCACATTTTCCCCTTGGTGTGATTACAGTTGATCAATTTCTATGAACAACATCTTCGATATAGTCCAAGTTGAAGTGACACCTATTTCCACATCTCTTGCCATTTTGATAGTGCATTGGAGGGGGCTTTTCTGATAGATTGGGTATGTAGATGATTTTGTGCCATATGTAGGATTTTGTGTTTTAACTTATTTTAGTAGTGCATAGTAATAGGTACAGAGATTGCATGGTGCTGATATAGCCGTTGTGATCCACATATCAGAATACTTTGTTGATGTTTAGTAGGTGGTAATATGATTAGTGATTAGAAACGCTTCGTGTTGTGAATTTGTATAGCAACACTCTGCCGGTGACCATTAGCACTGGTGCTCAGGTCATCTAATGTCAAAAGTTCATCTTTTGGAATGTTGTCCTGTCTCGTAACAAGTGACGGTCCAGACCTTATTTTGGGCAGTGAGAAGATCAAACTGGAATTAAACCAAC ATGACCACCATAGATCCAACAAGCCACTTGTACCTTCACCCATCTGATGGAAGCCACTTTGCAACCATAGAGAAGCTCCAAGGATCTTCAAACTACAGATCTTGGAAGCGTTCCATGGAAATTGCATTAGCTTCAAAAAGAAAGCTTGGCTTTGTCACAGGGGCATATAAGAAGGACACTGATGATGCTGTGAAGGCTGAACATTGGGAAACTTGTAATAGCATGGTTATATCATGGATCATTGGGACTGTTTCTGAGTCAATAAAGAAATCAGTTATGTTCCTGAATAGCTCTGCTCAAATATGGAAACAGCTAGATCAAAGGCTGTCCTTGACTAATGGGTCAAGGAAATACAAGCTCAATAGAGACTTGTATGAAACCAAACAAATGGGAAAGCCCATTAGTGATTACTACACAACCATGACAGGGTTATGGGAAGAACTGGAATCACTGAATGATTTCCCCCCTATCACTAATGTAACAACAGAAATCAATGCTTTTATACAAGCTTTGACAAAACAGCAAGAAGAGCAGAAGTTGTTTCAGTTTTTGAATGGTATAGATGATCACTATGGACCTCAGAGAAGCCAACTCCTCATGATGACACCCCTCCCTTCTGTAGAAACAGCTTGTAGTTGTCTGCAACAAGAGGAATCACAGAGAGAGCTATTCATAAATGTCAAGGAGGAAGCTGAAGGTCTGGCAATGTTCAGTAAAGGAGATGACACTTCATGTTCAGCATGTGGAAAGCCAGGTCATAGCAGAGAAGTGTGTTGGTCAGTGGTTGGCTATCCAAGCTGGCATGCCAAGAACAAACCACAAACCAAGAGCACATACAAAGGAAAAGGAAGAATGCAGGGTGGTCAATCTAAATGGAACAAGGGAAAACAATCTGGTGGTAACCAGAAAATTGCAGCCAATGCTCAAGAAAGTGGCTCAAGCACAGGATCTGCACCTTTTCTCACCCAACAACAGCTGGAACAACTGTTTAGAAGATTACCCCCTCCATCAAAGGGAGGATCAGATACAGATGATGAAATGGATATGAATTATTCAGGTATGGTGTCATGTTATTTTGCTGATTCTGTAAGTAGTGACTGGATAATTGACTCAGGGGCATCTAATCATATGACTGGTGATTATAATGCATTGATCTGTCCTGTTAAGAGTCAAAATAATCCACACATTAACCTACCAACTGGAGAAACATCTAGCATTTCTCATATAGGAAATGTAAAACTGAAAAGTGATCTAGAACTGAAGAAAGTATTGTTTGTTCCTGCATTCAAACATAACCTTCTATCTGTAAACAAGTTGGCTGAAGATTCAGACTGTAAAGTCAATTTTTACTCTGGATATTGTGTGATTGAGGAATGCAAAAATAACGAGATGTCTGTTTTGTTTCTGTTATTTAGGTCTGATGGAAAGGAACTTACGGTTGATAACAAGTTTCTCAAGGCTAACTACCCCCATCTGTTGATCAATTTCTATGAACAACATCTTCGATATAGTCCAAGTTGAAGTGACACCTATTTCCACATCTCTTGCCATTTTGATAGTGCATTGGAGGGGGCTTTTCTGATAGATTGGGTATGTAGATGATTTTGTGCCATATGTAGGATTTTGTGTTTTAACTTATTTTAGTAGTGCATAGTAATAGGTACAGAGATTGCATGGTGCTGATATAGCCGTTGTGATCCACATATCAGAATACTTTGTTGATGTTTAGTAGGTGGTAATATGATTAGTGATTAGAAACGCTTCGTGTTGTGAATTTGTATAGCAACACTCTGCCGGTGACCATTAGCACTGGTGCTCAGGTCATCTAATGTCAAAAGTTCATCTTTTGGAATGTTGTCCTGTCTCGTAACAAGTGACGGTCCAGACCTTATTTTGGGCAGTGAGAAGATCAAACTGGAATTAAACCAAC ATGACCACCATAGATCCAACAAGCCACTTGTACCTTCACCCATCTGATGGAAGCCACTTTGCAACCATAGAGAAGCTCCAAGGATCTTCAAACTACAGATCTTGGAAGCGTTCCATGGAAATTGCATTAGCTTCAAAAAGAAAGCTTGGCTTTGTCACAGGGGCATATAAGAAGGACACTGATGATGCTGTGAAGGCTGAACATTGGGAAACTTGTAATAGCATGGTTATATCATGGATCATTGGGACTGTTTCTGAGTCAATAAAGAAATCAGTTATGTTCCTGAATAGCTCTGCTCAAATATGGAAACAGCTAGATCAAAGGCTGTCCTTGACTAATGGGTCAAGGAAATACAAGCTCAATAGAGACTTGTATGAAACCAAACAAATGGGAAAGCCCATTAGTGATTACTACACAACCATGACAGGGTTATGGGAAGAACTGGAATCACTGAATGATTTCCCCCCTATCACTAATGTAACAACAGAAATCAATGCTTTTATACAAGCTTTGACAAAACAGCAAGAAGAGCAGAAGTTGTTTCAGTTTTTGAATGGTATAGATGATCACTATGGACCTCAGAGAAGCCAACTCCTCATGATGACACCCCTCCCTTCTGTAGAAACAGCTTGTAGTTGTCTGCAACAAGAGGAATCACAGAGAGAGCTATTCATAAATGTCAAGGAGGAAGCTGAAGGTCTGGCAATGTTCAGTAAAGGAGATGACACTTCATGTTCAGCATGTGGAAAGCCAGGTCATAGCAGAGAAGTGTGTTGGTCAGTGGTTGGCTATCCAAGCTGGCATGCCAAGAACAAACCACAAACCAAGAGCACATACAAAGGAAAAGGAAGAATGCAGGGTGGTCAATCTAAATGGAACAAGGGAAAACAATCTGGTGGTAACCAGAAAATTGCAGCCAATGCTCAAGAAAGTGGCTCAAGCACAGGATCTGCACCTTTTCTCACCCAACAACAGCTGGAACAACTGTTTAGAAGATTACCCCCTCCATCAAAGGGAGGATCAGATACAGATGATGAAATGGATATGAATTATTCAGGTATGGTGTCATGTTATTTTGCTGATTCTGTAAGTAGTGACTGGATAATTGACTCAGGGGCATCTAATCATATGACTGGTGATTATAATGCATTGATCTGTCCTGTTAAGAGTCAAAATAATCCACACATTAACCTACCAACTGGAGAAACATCTAGCATTTCTCATATAGGAAATGTAAAACTGAAAAGTGATCTAGAACTGAAGAAAGTATTGTTTGTTCCTGCATTCAAACATAACCTTCTATCTGTAAACAAGTTGGCTGAAGATTCAGACTGTAAAGTCAATTTTTACTCTGGATATTGTGTGATTGAGGAATGCAAAAATAACGAGATGTCTGTTTTGTTTCTGTTATTTAGGTCTGATGGAAAGGAACTTACGGTTGATAACAAGTTTCTCAAGGCTAACTACCCCCATCTGTTGATCAATTTCTATGAACAACATCTTCGATATAGTCCAAGTTGA MTTIDPTSHLYLHPSDGSHFATIEKLQGSSNYRSWKRSMEIALASKRKLGFVTGAYKKDTDDAVKAEHWETCNSMVISWIIGTVSESIKKSVMFLNSSAQIWKQLDQRLSLTNGSRKYKLNRDLYETKQMGKPISDYYTTMTGLWEELESLNDFPPITNVTTEINAFIQALTKQQEEQKLFQFLNGIDDHYGPQRSQLLMMTPLPSVETACSCLQQEESQRELFINVKEEAEGLAMFSKGDDTSCSACGKPGHSREVCWSVVGYPSWHAKNKPQTKSTYKGKGRMQGGQSKWNKGKQSGGNQKIAANAQESGSSTGSAPFLTQQQLEQLFRRLPPPSKGGSDTDDEMDMNYSGMVSCYFADSVSSDWIIDSGASNHMTGDYNALICPVKSQNNPHINLPTGETSSISHIGNVKLKSDLELKKVLFVPAFKHNLLSVNKLAEDSDCKVNFYSGYCVIEECKNNEMSVLFLLFRSDGKELTVDNKFLKANYPHLLINFYEQHLRYSPS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo16467.1 vs. NCBI nr
Match: gi|731345270|ref|XP_010683835.1| (PREDICTED: uncharacterized protein LOC104898448 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 548.5 bits (1412), Expect = 1.200e-152 Identity = 281/467 (60.17%), Postives = 347/467 (74.30%), Query Frame = 1
BLAST of Spo16467.1 vs. NCBI nr
Match: gi|731327976|ref|XP_010674803.1| (PREDICTED: uncharacterized protein LOC104890883 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 540.0 bits (1390), Expect = 4.300e-150 Identity = 281/467 (60.17%), Postives = 351/467 (75.16%), Query Frame = 1
BLAST of Spo16467.1 vs. NCBI nr
Match: gi|731332090|ref|XP_010677009.1| (PREDICTED: uncharacterized protein LOC104892720 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 532.7 bits (1371), Expect = 6.900e-148 Identity = 270/474 (56.96%), Postives = 356/474 (75.11%), Query Frame = 1
BLAST of Spo16467.1 vs. NCBI nr
Match: gi|731334796|ref|XP_010678401.1| (PREDICTED: uncharacterized protein LOC104893956 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 513.1 bits (1320), Expect = 5.700e-142 Identity = 262/446 (58.74%), Postives = 327/446 (73.32%), Query Frame = 1
BLAST of Spo16467.1 vs. NCBI nr
Match: gi|731312421|ref|XP_010674729.1| (PREDICTED: uncharacterized protein LOC104890822 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 480.3 bits (1235), Expect = 4.100e-132 Identity = 244/484 (50.41%), Postives = 341/484 (70.45%), Query Frame = 1
BLAST of Spo16467.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEE2_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_188530 PE=4 SV=1) HSP 1 Score: 384.0 bits (985), Expect = 2.800e-103 Identity = 184/263 (69.96%), Postives = 221/263 (84.03%), Query Frame = 1
BLAST of Spo16467.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BWE6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g184090 PE=4 SV=1) HSP 1 Score: 325.5 bits (833), Expect = 1.200e-85 Identity = 161/238 (67.65%), Postives = 194/238 (81.51%), Query Frame = 1
BLAST of Spo16467.1 vs. UniProtKB/TrEMBL
Match: A0A151RET9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_037648 PE=4 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 5.500e-51 Identity = 145/506 (28.66%), Postives = 236/506 (46.64%), Query Frame = 1
BLAST of Spo16467.1 vs. UniProtKB/TrEMBL
Match: A5BLV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033389 PE=4 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 7.900e-50 Identity = 145/483 (30.02%), Postives = 231/483 (47.83%), Query Frame = 1
BLAST of Spo16467.1 vs. UniProtKB/TrEMBL
Match: A5BEI8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043423 PE=4 SV=1) HSP 1 Score: 203.4 bits (516), Expect = 6.700e-49 Identity = 143/484 (29.55%), Postives = 229/484 (47.31%), Query Frame = 1
BLAST of Spo16467.1 vs. ExPASy Swiss-Prot
Match: LHP1_ARATH (Chromo domain-containing protein LHP1 OS=Arabidopsis thaliana GN=LHP1 PE=1 SV=2) HSP 1 Score: 63.5 bits (153), Expect = 7.400e-9 Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1
BLAST of Spo16467.1 vs. ExPASy Swiss-Prot
Match: LHP1_SOLLC (Chromo domain protein LHP1 OS=Solanum lycopersicum GN=LHP1 PE=1 SV=2) HSP 1 Score: 55.5 bits (132), Expect = 2.000e-6 Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1
BLAST of Spo16467.1 vs. ExPASy Swiss-Prot
Match: LHP1_ORYSJ (Probable chromo domain-containing protein LHP1 OS=Oryza sativa subsp. japonica GN=LHP1 PE=2 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 4.500e-6 Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 1
BLAST of Spo16467.1 vs. TAIR (Arabidopsis)
Match: AT1G21280.1 (Retrotransposon gag protein (InterPro:IPR005162)) HSP 1 Score: 86.7 bits (213), Expect = 4.600e-17 Identity = 60/230 (26.09%), Postives = 113/230 (49.13%), Query Frame = 1
BLAST of Spo16467.1 vs. TAIR (Arabidopsis)
Match: AT5G17690.1 (like heterochromatin protein (LHP1)) HSP 1 Score: 63.5 bits (153), Expect = 4.200e-10 Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo16467.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo16467.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo16467.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 3
BLAST of Spo16467.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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