Spo16559 (gene)

Overview
NameSpo16559
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRNA pseudouridine synthase
LocationSpoScf_00596 : 26969 .. 32336 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTAGCCTGAAAAGCGGATTTTGGCACACAAAATCGCCCTGAATTTTAGCCCGACATGGCCCACCAGGTCTACCGGAGGCCCGGAGTATTCAAACCGCGCGACCCATGGCTGTTTAGCTACTTATTCATTAAATCCAACGGGTCAAATAATCCTTATCTTCTTCTTCGCATACAAACTTGCCAATTTACTATCAATTAAGATAATAATGCTCGGAAACCCGGTTATAATTGGGGGATTTGGAATTGGGGCGGTGAATTTCGGCCCAATATCAACAAATCCGACAATCTCATATCACCGGTTAATCGGAGCTCCGGCGAAATTCCGGCGGCTTACTTTAGCAGACACTCTTGTCAGGAAGGGCAAATTGGCTGTTTGTTGTATTGCTTCTGCTCCCTCTGCTATTGGGTAATCCAAGTTTCTTCACTCTTATTTTAATTTTAATTATATGTTTATCTGCAATGTAGTTTAATTAGTTTGAAACCCATCAAAAAATTAGTGCAGTAAAATTAGTTCTATCTTGCAATGTTTTATGTTATAGACAATGTACAAATTCTATCTTGCAATGTTTTATGTTATAGACAATGTAAAAATTCTACCTTAGCACCACTCCGGTGCGACTAGAGCTAGGTATACCAAATGGTGGTTTTGGTTATGATTTCATTCTTGATTGACAAAATGGAACAAATTGAGGGTCAAATTAAGTCAACTCTTATTTGTTATGGAATTATTAGGCTTCACTTGTTGAGTAATCTTATGTTATGATGCACTATGAATAAGTGAGGCCCTAAACACCCTCACAATTACTTATAATTGCCTGCACATTTTATGTTATAATCCTTATAGACAATGTACAAATTCTATCCTGCACCCGGGTGCAACTAGCTCGATTTTGGTTACAGTTTCATCCTTGAACTATGTTATGATGTACTATGAATAAATGAGGCTCTAAACACGAAACATTCGCTCGCAATTACTTATAATCTCCTGCACATTTTATGTTATAGACAATGTACAAATTTTATCTTGCACCCGGGTGCGTTAGGTGCACCAAATGATGATTTTGGTTACGGCTTCATCCTTGGTTAACAAAATGGCGGACAATTGAGGGTCAAATCAAGTCGATTCTTATTTGTTATGGAATAGCAGTTTCGGAGTACTATTAGACTTCATTTGTCGAGTAATGTAATTTATATTGTTAATTGGGTTGTTTAATGAAATATTGATAGGAGTGGTGAACTTTATATGAAATTTAACTTAGGAAAGGTTATTGAAAATTTGAAATTGATTATAAGGGTTGGAGTTGAGGGATAGTTTGCACATCTTATTCATAACATTATATGAACATGCTCTTATGCAGCATGAAGTATCACGAAACCAGTACTAGTAGTAGTAGCCTGGCTAGTAGGTAGGTTCATCGACACCTTAGTGAAAGGAAGGAATTTATGACTTTTGATTTTCTCTAGAGATATCCGCACATTGATCCATCTATAACTCAGTGGACTAGTAGTCATACATACAAATATAAAACTACCTCATTGGTGTTACCATATGTCAAGGTTGTTCGACTACTGGTATCACTATAATACGAGCTTGATTGAGAGGAGGTTTTATTGGGTGACTGATTCTTATCCTTTGATGAAAGTGGTTGAAGGAGATATATGGTCTAAGGTAGAGACGCTTCCAACTCTTGCATATTTGAATTTGCTATAGACCGATGCTCATTAATAGGCACATTGGACACCAAACTCGACCATCCATTTCATCCACTAGGTTCATATTAGGCACATTGGAAACACCAAACTCGACCATCCATCAGTGGCGGCACCAATAGGGGTTCAGTTGGTTCAACTGAACCCCTACTGGATTTTAGGAAAGCTTAATTAAAAAAAACCCAGCAAATTAATTTATAAACATTTGCACGCATAACTAATCTTAATGAACCGGTGCAAGTCAGTGGTCCAAACACCACTCAATCTCCAACTGGCTGCGGGATCGATCCCTGCCAGTCTTCTAAGCAAATGTGCCTTCGTGAGTGTTTCTTCATTTTTAGTGTACTCCTAGTTTGTTTTTCCATGTAACGGGTTATTTGAATGATTATTCGGTTGATATTAGGGAAAGGCATATGTTACCTAGTTTTCTTTCCTAACAAATTGTAACTGCAAATTTGCACTAATGGCACATTCACACCCAATATTATGGTTGTAAGCAATTAGGAGAAAGAGATTTTATTGTATTATATATTGATATAGATTAGCTTTTTTTCTTCTTCTTTTAAACCCCAAACCCTTAACGAAAAATTCTTGGGACCGCCACTGCCATCCATTAAGGAAAGTATGTAAGTCAGTGTGGTTTCTTCCAATCCATTTCATCCACTTGGTTCATGTTGTCTCCTTATAGCATCTCCAATGGTTGTATATAGGGACTAGCTTGAAATTTATAAAAGTTTCAAACTAATAGGTAGACCATTGGAGAAAAGTAATAAATTAGCTTGGCCAAGCAAATTAGCTTAAACAAGCTAATTTGCTTGAGAACTTCCAAAAATTGCCAAATAATTAATTGACAAGTGGGACCAATTTAAATAACAAGCTAGTTGCTAGCCATTGGAGCACAAATTAGCTAGACAATGAAATGGCTTGAAATCTTATGTGGCATAACAAGGTAATTGTCAAATTAGCTTACCATTAGAGATGCTCTTATAAACTCCCTGATTCTTTATGGAATAGAGAATGTATTATTCGGTGTACTTGAAAAATTTCCTTAGATCTATCCTTACTTTCAGCAAGTTTCCATGTCTGCCAATCTCGGGGTTTTCAGACAGTTATTAACAGACATATTTTGTTCTAGGCTTTTGCCATTCTTTATTCGATGTCACATCTGACTCTCGTTTCTTATTTTTAGCAACACAAAATATGACCGTCTGTTGCCATATGTTCCAACGAAACACCCACCTAGAGTTGAACACTTGGTTGTCTTAGAAGCAAGCCCTGTTTGTGATTACATTAGCAGAACTTTGAACCTCCCACCTCTGTAAGTTTTTTTTACTGTTTCCTCATTTTTTGTCCTTTCTTTGATGATGAGTGGGAAGAGGTAGTAAACTGAGCTAGTGATTTATGAAGGTATGTTGCTGATCTTATCCATTTTGGAGCTGTTTATTATGCACTCGTACATCCTAAGCCTCCGGCAACTGCAACTCCAGAGCAGGTTCAAGTATATGAAAAATTTACTTCACCTCATCTTCTAAAACAGAGGCAGTCACTTGAGGGGAAAACTGTTTCGGAAGCACAAAAGACCTTCCGTATAACTCATATCGATCAACATGTTGAAGTTGGAACTTACTTGCGCGTATATGTACATCCAAGACGCTTCCCAAGGTTTTTTGAGAATAAAGTTAATTATTTGTGCTTGCAATTTTCCTTTTATGTATAAGTCACACACTGGATTCTTTCAGGTGCTATGAAATCGATTGGAAGTCGAGGATTATAGCTGTTATGGAATCTTATGTGACTCTGGACAAGCCTGCTGGCACTTCTGTAAGTAACTCTTGGAACTACTAGTTACTTAGGTTCTTTATAGTCTTCTGATTAGAAGAGGTATATGCTGTGAATGAAGAAACTAGAATAGATTCATTTATTGAGGACGACTACTTTTTTTTCCTCATCACCACCCCTCTAGGGTGTGCTTTAACTGGTGACATGAAGCATCTAAAGCTTCATGCAGTGGTTAGAAGAATTACCGCTTGGTAAGATTGAGAATATTGTTCAAGCATCTTACGGTCAGTTTGGTAGCCGGTAATAAATGGTAGGAATGGGAATAAAACTAAGTGTTATTTGGCAAGAAAATAACATTATGATGTCCCACCTAATAAATTTGGGAATGAAATTTTGTGTCAAACTTGGTGTTTTCTTCATAAATTTGCATTCCCACCTAATACTACTCCCCAAATGGTAAATGTAATGGAGGGTAATGGAAATTTATAAAGAAAAAGAGATCTTTCTAGTGAATTAGCATTACCATGGAAATGAATATTGATTTTCCTTACAAATTCATTCTCTTTGACACCGTTTATGGCCGGCTACCAAACGGGCCGTTAGGGCTTGAAGTTGGAGTTTTTGTGGCTCTTAACTGATCTTTTGTTCCTCCTTGTATCTTACCTGATCTTCACTCTATTAATTGTTATCTTTTCTTATGGTTTTGTTCCTTGTTATTAAAACATCTATTTTAAGGTAGACGTGTTTATACCTAATATTTTAAGATCATCTGTTTTAAGGTAGACGTGTTTATGCCTAATATTTTAAGGTAGACGTGTTAAATGGGACTGTGGGACATTATCCCATTTCACTTGGAGCTGTGATTATCATCTGATGCAGTCCTTTGAAATGCCTATGTTAATCTCCAAGCTAATATCTGCAATGATGTTTATCTGTCTTTGACTAGGTAGGAGGAACTTCCAACAATATAGAAGAAACTTGTGCGAACTTTGCTACTCGTGCTTTGGGATTGACTAGTCCGCTCTTGACTACACATCAGATTGATAACTGTACTGAAGGATGGTAATATGCTTAGACAGTTGCAGACTATTTTCGTTCAACTGTTTTGGTGCCTAAATCAGCATGTGACCGTCAAACTCATTGCAGTGTTGTGATGGCCAGAACGGAAGATTACTGTTCTATTTTTCATGAAAAAATTAGAGTAAGTTGATACTGTTATCAATAAAGTTTCATATATGATACTCCCTCTGTTCCTAAATAAGTGTCTCATTTGGTGAAAAACACGGGTATTAAGAAATGTGAAAAATGGGTAAGAAAAACAATGGTTGGGAGTGTTTTTATGGGGAAAGGGTAAAGTAGATGATTGTTTATTGATAAAGTACAAATAAAAGTGGAAGTGGGGATGGAAAAGTGTATAATGTGTACGAAAATACAATCATGATTTATGGAAAAGTGGGAAAAATGTATGTCCAAAATTAGAAAAAGGACACTTAAATAGGAAAGCCCTATTAGGAATCCAGGACACCTATTTAGGAACGGAGAGAGTACAATTATTACTGTATTGGACATTGACAATCAAATCCATTTGTACATTATACATGAACTATTGTGACTGATTAATCTTTCTGATGTTTGGTGCAATTAGAGTGTTAGACATCCAACACTAGTACATTTTTGAAAACTCTTACTAAGCTGATATCTAATGTGTTTGTTGCTCTAAATTAGGATAAGAAGGTCAAGAAATACTATCTTGCCCTTGTTGCAGCTCCAGTATCGTGTGGGATAATCACCCATTACATGCAACCGGCAAAGCTTGCTCCACGTATAGTTTCTGAAGGTAACAATCAACATATTAGCCCTTTTGTTTCTTCTTCATAA

mRNA sequence

TTTTAGCCTGAAAAGCGGATTTTGGCACACAAAATCGCCCTGAATTTTAGCCCGACATGGCCCACCAGGTCTACCGGAGGCCCGGAGTATTCAAACCGCGCGACCCATGGCTGTTTAGCTACTTATTCATTAAATCCAACGGGTCAAATAATCCTTATCTTCTTCTTCGCATACAAACTTGCCAATTTACTATCAATTAAGATAATAATGCTCGGAAACCCGGTTATAATTGGGGGATTTGGAATTGGGGCGGTGAATTTCGGCCCAATATCAACAAATCCGACAATCTCATATCACCGGTTAATCGGAGCTCCGGCGAAATTCCGGCGGCTTACTTTAGCAGACACTCTTGTCAGGAAGGGCAAATTGGCTGTTTGTTGTATTGCTTCTGCTCCCTCTGCTATTGGCAACACAAAATATGACCGTCTGTTGCCATATGTTCCAACGAAACACCCACCTAGAGTTGAACACTTGGTTGTCTTAGAAGCAAGCCCTGTTTGTGATTACATTAGCAGAACTTTGAACCTCCCACCTCTGTATGTTGCTGATCTTATCCATTTTGGAGCTGTTTATTATGCACTCGTACATCCTAAGCCTCCGGCAACTGCAACTCCAGAGCAGGTTCAAGTATATGAAAAATTTACTTCACCTCATCTTCTAAAACAGAGGCAGTCACTTGAGGGGAAAACTGTTTCGGAAGCACAAAAGACCTTCCGTATAACTCATATCGATCAACATGTTGAAGTTGGAACTTACTTGCGCGTATATGTACATCCAAGACGCTTCCCAAGGTGCTATGAAATCGATTGGAAGTCGAGGATTATAGCTGTTATGGAATCTTATGTGACTCTGGACAAGCCTGCTGGCACTTCTGTAGGAGGAACTTCCAACAATATAGAAGAAACTTGTGCGAACTTTGCTACTCGTGCTTTGGGATTGACTAGTCCGCTCTTGACTACACATCAGATTGATAACTGTACTGAAGGATGTGTTGTGATGGCCAGAACGGAAGATTACTGTTCTATTTTTCATGAAAAAATTAGAGATAAGAAGGTCAAGAAATACTATCTTGCCCTTGTTGCAGCTCCAGTATCGTGTGGGATAATCACCCATTACATGCAACCGGCAAAGCTTGCTCCACGTATAGTTTCTGAAGGTAACAATCAACATATTAGCCCTTTTGTTTCTTCTTCATAA

Coding sequence (CDS)

ATGCTCGGAAACCCGGTTATAATTGGGGGATTTGGAATTGGGGCGGTGAATTTCGGCCCAATATCAACAAATCCGACAATCTCATATCACCGGTTAATCGGAGCTCCGGCGAAATTCCGGCGGCTTACTTTAGCAGACACTCTTGTCAGGAAGGGCAAATTGGCTGTTTGTTGTATTGCTTCTGCTCCCTCTGCTATTGGCAACACAAAATATGACCGTCTGTTGCCATATGTTCCAACGAAACACCCACCTAGAGTTGAACACTTGGTTGTCTTAGAAGCAAGCCCTGTTTGTGATTACATTAGCAGAACTTTGAACCTCCCACCTCTGTATGTTGCTGATCTTATCCATTTTGGAGCTGTTTATTATGCACTCGTACATCCTAAGCCTCCGGCAACTGCAACTCCAGAGCAGGTTCAAGTATATGAAAAATTTACTTCACCTCATCTTCTAAAACAGAGGCAGTCACTTGAGGGGAAAACTGTTTCGGAAGCACAAAAGACCTTCCGTATAACTCATATCGATCAACATGTTGAAGTTGGAACTTACTTGCGCGTATATGTACATCCAAGACGCTTCCCAAGGTGCTATGAAATCGATTGGAAGTCGAGGATTATAGCTGTTATGGAATCTTATGTGACTCTGGACAAGCCTGCTGGCACTTCTGTAGGAGGAACTTCCAACAATATAGAAGAAACTTGTGCGAACTTTGCTACTCGTGCTTTGGGATTGACTAGTCCGCTCTTGACTACACATCAGATTGATAACTGTACTGAAGGATGTGTTGTGATGGCCAGAACGGAAGATTACTGTTCTATTTTTCATGAAAAAATTAGAGATAAGAAGGTCAAGAAATACTATCTTGCCCTTGTTGCAGCTCCAGTATCGTGTGGGATAATCACCCATTACATGCAACCGGCAAAGCTTGCTCCACGTATAGTTTCTGAAGGTAACAATCAACATATTAGCCCTTTTGTTTCTTCTTCATAA

Protein sequence

MLGNPVIIGGFGIGAVNFGPISTNPTISYHRLIGAPAKFRRLTLADTLVRKGKLAVCCIASAPSAIGNTKYDRLLPYVPTKHPPRVEHLVVLEASPVCDYISRTLNLPPLYVADLIHFGAVYYALVHPKPPATATPEQVQVYEKFTSPHLLKQRQSLEGKTVSEAQKTFRITHIDQHVEVGTYLRVYVHPRRFPRCYEIDWKSRIIAVMESYVTLDKPAGTSVGGTSNNIEETCANFATRALGLTSPLLTTHQIDNCTEGCVVMARTEDYCSIFHEKIRDKKVKKYYLALVAAPVSCGIITHYMQPAKLAPRIVSEGNNQHISPFVSSS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo16559.1Spo16559.1mRNA


Homology
[Close]
BLAST of Spo16559.1 vs. NCBI nr
Match: gi|902122870|gb|KNA04012.1| (hypothetical protein SOVF_203620 [Spinacia oleracea])

HSP 1 Score: 641.7 bits (1654), Expect = 6.900e-181
Identity = 315/316 (99.68%), Postives = 315/316 (99.68%), Query Frame = 1 

		  

Query: 1   MLGNPVIIGGFGIGAVNFGPISTNPTISYHRLIGAPAKFRRLTLADTLVRKGKLAVCCIA 60
           MLGNPVIIGGFGIGAVNFGPISTNPTISYHRLIGAPAKFRRLTLADTLVRKGKLAVCCIA
Sbjct: 1   MLGNPVIIGGFGIGAVNFGPISTNPTISYHRLIGAPAKFRRLTLADTLVRKGKLAVCCIA 60

Query: 61  SAPSAIGNTKYDRLLPYVPTKHPPRVEHLVVLEASPVCDYISRTLNLPPLYVADLIHFGA 120
           SAPSAIGNTKYDRLLPYVPTKHPPRVEHLVVLEASPVCDYISRTLNLPPLYVADLIHFGA
Sbjct: 61  SAPSAIGNTKYDRLLPYVPTKHPPRVEHLVVLEASPVCDYISRTLNLPPLYVADLIHFGA 120

Query: 121 VYYALVHPKPPATATPEQVQVYEKFTSPHLLKQRQSLEGKTVSEAQKTFRITHIDQHVEV 180
           VYYALVHPKPPATATPEQVQVYEKFTSPHLLKQRQSLEGKTVSEAQKTFRITHIDQHVEV
Sbjct: 121 VYYALVHPKPPATATPEQVQVYEKFTSPHLLKQRQSLEGKTVSEAQKTFRITHIDQHVEV 180

Query: 181 GTYLRVYVHPRRFPRCYEIDWKSRIIAVMESYVTLDKPAGTSVGGTSNNIEETCANFATR 240
           GTYLRVYVHPRRFPRCYEIDWKSRIIAVMESYV LDKPAGTSVGGTSNNIEETCANFATR
Sbjct: 181 GTYLRVYVHPRRFPRCYEIDWKSRIIAVMESYVILDKPAGTSVGGTSNNIEETCANFATR 240

Query: 241 ALGLTSPLLTTHQIDNCTEGCVVMARTEDYCSIFHEKIRDKKVKKYYLALVAAPVSCGII 300
           ALGLTSPLLTTHQIDNCTEGCVVMARTEDYCSIFHEKIRDKKVKKYYLALVAAPVSCGII
Sbjct: 241 ALGLTSPLLTTHQIDNCTEGCVVMARTEDYCSIFHEKIRDKKVKKYYLALVAAPVSCGII 300

Query: 301 THYMQPAKLAPRIVSE 317
           THYMQPAKLAPRIVSE
Sbjct: 301 THYMQPAKLAPRIVSE 316
[Close]
BLAST of Spo16559.1 vs. NCBI nr
Match: gi|731369863|ref|XP_010665548.1| (PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 479.6 bits (1233), Expect = 4.500e-132
Identity = 245/322 (76.09%), Postives = 268/322 (83.23%), Query Frame = 1 

		  

Query: 1   MLGNPVIIGGFGIGAVNFGPISTNPTISYHRL-------IGAPAKFRRLTLADTLVRKGK 60
           MLGN +      IGAVN+ PISTN  IS  R+       IGAPA     TL   LV   +
Sbjct: 1   MLGNQL-----AIGAVNYLPISTNTPISPRRVQTNHIHFIGAPA-----TLRCPLVGNAE 60

Query: 61  LAVCCIASAPSAIGNTKYDRLLPYVPTKHPPRVEHLVVLEASPVCDYISRTLNLPPLYVA 120
            A+ C+ASAPS  G  +YDRLLP   T HPPR+EHLVVL+   V DYISRTL+LP LYVA
Sbjct: 61  SAIYCVASAPSTNGYPEYDRLLPCPSTTHPPRIEHLVVLKEGSVGDYISRTLDLPALYVA 120

Query: 121 DLIHFGAVYYALVHPKPPATATPEQVQVYEKFTSPHLLKQRQSLEGKTVSEAQKTFRITH 180
           DLIHFGAVYYALVHP+PP TATPEQVQVYE FTSP LLK+R+SL+GKT+ EAQ+TFRITH
Sbjct: 121 DLIHFGAVYYALVHPEPPTTATPEQVQVYENFTSPLLLKKRRSLKGKTIPEAQRTFRITH 180

Query: 181 IDQHVEVGTYLRVYVHPRRFPRCYEIDWKSRIIAVMESYVTLDKPAGTSVGGTSNNIEET 240
           +D+HVEVGTYLRVYVHPRRFPRCYEIDWK RIIA+ ESYV LDKPAGTSVGGTSNNIEE+
Sbjct: 181 VDEHVEVGTYLRVYVHPRRFPRCYEIDWKLRIIAITESYVVLDKPAGTSVGGTSNNIEES 240

Query: 241 CANFATRALGLTSPLLTTHQIDNCTEGCVVMARTEDYCSIFHEKIRDKKVKKYYLALVAA 300
           CANFATRALGL SPLLTTHQIDNCTEGCVVMARTEDYCS+FHEKIRDKKVKK YLALVA+
Sbjct: 241 CANFATRALGLASPLLTTHQIDNCTEGCVVMARTEDYCSVFHEKIRDKKVKKLYLALVAS 300

Query: 301 PVSCGIITHYMQPAKLAPRIVS 316
           PVSCGIITHYMQPAKLAPRI+S
Sbjct: 301 PVSCGIITHYMQPAKLAPRILS 312
[Close]
BLAST of Spo16559.1 vs. NCBI nr
Match: gi|731369849|ref|XP_010665544.1| (PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 408.7 bits (1049), Expect = 9.800e-111
Identity = 207/328 (63.11%), Postives = 247/328 (75.30%), Query Frame = 1 

		  

Query: 14  GAVNFGPISTNPTI-----SYHRLIGAPAKFRRLTLADTLVRKGKL----AVCCIAS--- 73
           GA N G    N        ++ R+ GAP+ FRR       V + KL      C ++S   
Sbjct: 4   GATNVGSNFINAMFLSLQKTHFRVFGAPSTFRRTLATRHHVSRKKLRREKVSCSVSSFRS 63

Query: 74  -------------APSAIGNTKYDRLLPYVPTKHPPRVEHLVVLEASPVCDYISRTLNLP 133
                        AP   G  +YDRLLP      PPRVEHLVVLE SPVC+YIS++L+LP
Sbjct: 64  QDVTSTAATITSPAPFVNGYPEYDRLLPCPSENMPPRVEHLVVLEESPVCEYISKSLDLP 123

Query: 134 PLYVADLIHFGAVYYALVHPKPPATATPEQVQVYEKFTSPHLLKQRQSLEGKTVSEAQKT 193
           PLYVADLIHFGAVYYA V P+PP TATPEQ+Q+YE FTSP LLK+R+S +GKTV EAQKT
Sbjct: 124 PLYVADLIHFGAVYYAHVCPEPPVTATPEQIQLYEHFTSPELLKERRSFKGKTVREAQKT 183

Query: 194 FRITHIDQHVEVGTYLRVYVHPRRFPRCYEIDWKSRIIAVMESYVTLDKPAGTSVGGTSN 253
            R+TH D+++E GTYLRV+VHP+RFPRCYEIDWK+RI+AV +SYV LDKPAGTSVGG+S+
Sbjct: 184 LRVTHPDEYLEAGTYLRVHVHPKRFPRCYEIDWKARILAVTDSYVILDKPAGTSVGGSSD 243

Query: 254 NIEETCANFATRALGLTSPLLTTHQIDNCTEGCVVMARTEDYCSIFHEKIRDKKVKKYYL 313
           NIEE+CANFATRALGLTSPL TTHQIDNCTEGCVV+A++++YCS FH+KIRDK VKK YL
Sbjct: 244 NIEESCANFATRALGLTSPLFTTHQIDNCTEGCVVLAKSKEYCSTFHKKIRDKLVKKLYL 303

Query: 314 ALVAAPVSCGIITHYMQPAKLAPRIVSE 317
           AL AAPV  GI+THYM+PA LAPR++SE
Sbjct: 304 ALAAAPVPRGILTHYMRPANLAPRLISE 331
[Close]
BLAST of Spo16559.1 vs. NCBI nr
Match: gi|902187681|gb|KNA10963.1| (hypothetical protein SOVF_139500, partial [Spinacia oleracea])

HSP 1 Score: 402.1 bits (1032), Expect = 9.100e-109
Identity = 204/330 (61.82%), Postives = 249/330 (75.45%), Query Frame = 1 

		  

Query: 3   GNPVIIGGFGIGAVNFGPISTNPTISYHRLIGAPAKFRRLTLADTLVRKGKLA---VCC- 62
           GNP+ +G    G+     + ++   ++ RL GAP    R    +  + K K+    + C 
Sbjct: 13  GNPMSLGASNSGSNFINALFSSLRRTHFRLAGAPTTLWRTLATNRPISKNKVKREKINCS 72

Query: 63  ----------IASAPSAIGN--TKYDRLLPYVPTKHPPRVEHLVVLEASPVCDYISRTLN 122
                     I S+ S++ N   +Y RLLP   T  PPRVEHLVVLE SPVC+YIS++L+
Sbjct: 73  VSVFNNEASSITSSTSSVNNGYPEYSRLLPSPSTNAPPRVEHLVVLEESPVCEYISKSLD 132

Query: 123 LPPLYVADLIHFGAVYYALVHPKPPATATPEQVQVYEKFTSPHLLKQRQSLEGKTVSEAQ 182
           LPPLYVADLIHFGAVYYAL+ P PP TATPEQV +Y++FTSP LLKQR+S +GKT  EAQ
Sbjct: 133 LPPLYVADLIHFGAVYYALICPDPPVTATPEQVVLYKQFTSPELLKQRRSTKGKTFREAQ 192

Query: 183 KTFRITHIDQHVEVGTYLRVYVHPRRFPRCYEIDWKSRIIAVMESYVTLDKPAGTSVGGT 242
           KTFR+T I+++ EVGTYLRV+VHP+RFPRCYE+DW SR+IAV ESYV L+KPAGTSVGG+
Sbjct: 193 KTFRVTRIEENFEVGTYLRVHVHPKRFPRCYEVDWMSRVIAVTESYVVLNKPAGTSVGGS 252

Query: 243 SNNIEETCANFATRALGLTSPLLTTHQIDNCTEGCVVMARTEDYCSIFHEKIRDKKVKKY 302
           S+NIEE+CANF TRALGLTSPL TTHQIDNCTEGC+V+AR ++YCS FH+KIRDK VKK 
Sbjct: 253 SDNIEESCANFTTRALGLTSPLYTTHQIDNCTEGCLVLARDKEYCSKFHKKIRDKMVKKL 312

Query: 303 YLALVAAPVSCGIITHYMQPAKLAPRIVSE 317
           YLAL AAPV  GI THYM+PA LAPR+VSE
Sbjct: 313 YLALAAAPVPRGIYTHYMRPANLAPRLVSE 342
[Close]
BLAST of Spo16559.1 vs. NCBI nr
Match: gi|778658473|ref|XP_011652789.1| (PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 394.0 bits (1011), Expect = 2.500e-106
Identity = 188/250 (75.20%), Postives = 217/250 (86.80%), Query Frame = 1 

		  

Query: 67  GNTKYDRLLPYVPTKHPPRVEHLVVLEASPVCDYISRTLNLPPLYVADLIHFGAVYYALV 126
           G  +Y RLLP      PPRVEH+VVLEA PV +YI ++LNLPPLYVADLIHFGAVYYALV
Sbjct: 75  GYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADLIHFGAVYYALV 134

Query: 127 HPKPPATATPEQVQVYEKFTSPHLLKQRQSLEGKTVSEAQKTFRITHIDQHVEVGTYLRV 186
            P+PP TATPEQ+++++KFT P  LK R+S++GKTV EAQKTFRITH+D+ VEVGTYLRV
Sbjct: 135 CPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGTYLRV 194

Query: 187 YVHPRRFPRCYEIDWKSRIIAVMESYVTLDKPAGTSVGGTSNNIEETCANFATRALGLTS 246
           +VHP+RFPRCYEIDWKSRIIAV ESYV LDKPAGTSVGGT++NIEE+CA FATRALGLTS
Sbjct: 195 HVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTS 254

Query: 247 PLLTTHQIDNCTEGCVVMARTEDYCSIFHEKIRDKKVKKYYLALVAAPVSCGIITHYMQP 306
           PL TTHQIDNCTEGCV+ ART++YCSIFH KIR+KKV K YLAL AAPV  GIITHYM+P
Sbjct: 255 PLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAPVPMGIITHYMRP 314

Query: 307 AKLAPRIVSE 317
             +APR+VS+
Sbjct: 315 INIAPRLVSK 324
[Close]
BLAST of Spo16559.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q9P9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_203620 PE=4 SV=1)

HSP 1 Score: 641.7 bits (1654), Expect = 4.800e-181
Identity = 315/316 (99.68%), Postives = 315/316 (99.68%), Query Frame = 1 

		  

Query: 1   MLGNPVIIGGFGIGAVNFGPISTNPTISYHRLIGAPAKFRRLTLADTLVRKGKLAVCCIA 60
           MLGNPVIIGGFGIGAVNFGPISTNPTISYHRLIGAPAKFRRLTLADTLVRKGKLAVCCIA
Sbjct: 1   MLGNPVIIGGFGIGAVNFGPISTNPTISYHRLIGAPAKFRRLTLADTLVRKGKLAVCCIA 60

Query: 61  SAPSAIGNTKYDRLLPYVPTKHPPRVEHLVVLEASPVCDYISRTLNLPPLYVADLIHFGA 120
           SAPSAIGNTKYDRLLPYVPTKHPPRVEHLVVLEASPVCDYISRTLNLPPLYVADLIHFGA
Sbjct: 61  SAPSAIGNTKYDRLLPYVPTKHPPRVEHLVVLEASPVCDYISRTLNLPPLYVADLIHFGA 120

Query: 121 VYYALVHPKPPATATPEQVQVYEKFTSPHLLKQRQSLEGKTVSEAQKTFRITHIDQHVEV 180
           VYYALVHPKPPATATPEQVQVYEKFTSPHLLKQRQSLEGKTVSEAQKTFRITHIDQHVEV
Sbjct: 121 VYYALVHPKPPATATPEQVQVYEKFTSPHLLKQRQSLEGKTVSEAQKTFRITHIDQHVEV 180

Query: 181 GTYLRVYVHPRRFPRCYEIDWKSRIIAVMESYVTLDKPAGTSVGGTSNNIEETCANFATR 240
           GTYLRVYVHPRRFPRCYEIDWKSRIIAVMESYV LDKPAGTSVGGTSNNIEETCANFATR
Sbjct: 181 GTYLRVYVHPRRFPRCYEIDWKSRIIAVMESYVILDKPAGTSVGGTSNNIEETCANFATR 240

Query: 241 ALGLTSPLLTTHQIDNCTEGCVVMARTEDYCSIFHEKIRDKKVKKYYLALVAAPVSCGII 300
           ALGLTSPLLTTHQIDNCTEGCVVMARTEDYCSIFHEKIRDKKVKKYYLALVAAPVSCGII
Sbjct: 241 ALGLTSPLLTTHQIDNCTEGCVVMARTEDYCSIFHEKIRDKKVKKYYLALVAAPVSCGII 300

Query: 301 THYMQPAKLAPRIVSE 317
           THYMQPAKLAPRIVSE
Sbjct: 301 THYMQPAKLAPRIVSE 316
[Close]
BLAST of Spo16559.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E0U7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g200350 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 3.100e-132
Identity = 245/322 (76.09%), Postives = 268/322 (83.23%), Query Frame = 1 

		  

Query: 1   MLGNPVIIGGFGIGAVNFGPISTNPTISYHRL-------IGAPAKFRRLTLADTLVRKGK 60
           MLGN +      IGAVN+ PISTN  IS  R+       IGAPA     TL   LV   +
Sbjct: 1   MLGNQL-----AIGAVNYLPISTNTPISPRRVQTNHIHFIGAPA-----TLRCPLVGNAE 60

Query: 61  LAVCCIASAPSAIGNTKYDRLLPYVPTKHPPRVEHLVVLEASPVCDYISRTLNLPPLYVA 120
            A+ C+ASAPS  G  +YDRLLP   T HPPR+EHLVVL+   V DYISRTL+LP LYVA
Sbjct: 61  SAIYCVASAPSTNGYPEYDRLLPCPSTTHPPRIEHLVVLKEGSVGDYISRTLDLPALYVA 120

Query: 121 DLIHFGAVYYALVHPKPPATATPEQVQVYEKFTSPHLLKQRQSLEGKTVSEAQKTFRITH 180
           DLIHFGAVYYALVHP+PP TATPEQVQVYE FTSP LLK+R+SL+GKT+ EAQ+TFRITH
Sbjct: 121 DLIHFGAVYYALVHPEPPTTATPEQVQVYENFTSPLLLKKRRSLKGKTIPEAQRTFRITH 180

Query: 181 IDQHVEVGTYLRVYVHPRRFPRCYEIDWKSRIIAVMESYVTLDKPAGTSVGGTSNNIEET 240
           +D+HVEVGTYLRVYVHPRRFPRCYEIDWK RIIA+ ESYV LDKPAGTSVGGTSNNIEE+
Sbjct: 181 VDEHVEVGTYLRVYVHPRRFPRCYEIDWKLRIIAITESYVVLDKPAGTSVGGTSNNIEES 240

Query: 241 CANFATRALGLTSPLLTTHQIDNCTEGCVVMARTEDYCSIFHEKIRDKKVKKYYLALVAA 300
           CANFATRALGL SPLLTTHQIDNCTEGCVVMARTEDYCS+FHEKIRDKKVKK YLALVA+
Sbjct: 241 CANFATRALGLASPLLTTHQIDNCTEGCVVMARTEDYCSVFHEKIRDKKVKKLYLALVAS 300

Query: 301 PVSCGIITHYMQPAKLAPRIVS 316
           PVSCGIITHYMQPAKLAPRI+S
Sbjct: 301 PVSCGIITHYMQPAKLAPRILS 312
[Close]
BLAST of Spo16559.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B9P8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g200330 PE=4 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 6.800e-111
Identity = 207/328 (63.11%), Postives = 247/328 (75.30%), Query Frame = 1 

		  

Query: 14  GAVNFGPISTNPTI-----SYHRLIGAPAKFRRLTLADTLVRKGKL----AVCCIAS--- 73
           GA N G    N        ++ R+ GAP+ FRR       V + KL      C ++S   
Sbjct: 4   GATNVGSNFINAMFLSLQKTHFRVFGAPSTFRRTLATRHHVSRKKLRREKVSCSVSSFRS 63

Query: 74  -------------APSAIGNTKYDRLLPYVPTKHPPRVEHLVVLEASPVCDYISRTLNLP 133
                        AP   G  +YDRLLP      PPRVEHLVVLE SPVC+YIS++L+LP
Sbjct: 64  QDVTSTAATITSPAPFVNGYPEYDRLLPCPSENMPPRVEHLVVLEESPVCEYISKSLDLP 123

Query: 134 PLYVADLIHFGAVYYALVHPKPPATATPEQVQVYEKFTSPHLLKQRQSLEGKTVSEAQKT 193
           PLYVADLIHFGAVYYA V P+PP TATPEQ+Q+YE FTSP LLK+R+S +GKTV EAQKT
Sbjct: 124 PLYVADLIHFGAVYYAHVCPEPPVTATPEQIQLYEHFTSPELLKERRSFKGKTVREAQKT 183

Query: 194 FRITHIDQHVEVGTYLRVYVHPRRFPRCYEIDWKSRIIAVMESYVTLDKPAGTSVGGTSN 253
            R+TH D+++E GTYLRV+VHP+RFPRCYEIDWK+RI+AV +SYV LDKPAGTSVGG+S+
Sbjct: 184 LRVTHPDEYLEAGTYLRVHVHPKRFPRCYEIDWKARILAVTDSYVILDKPAGTSVGGSSD 243

Query: 254 NIEETCANFATRALGLTSPLLTTHQIDNCTEGCVVMARTEDYCSIFHEKIRDKKVKKYYL 313
           NIEE+CANFATRALGLTSPL TTHQIDNCTEGCVV+A++++YCS FH+KIRDK VKK YL
Sbjct: 244 NIEESCANFATRALGLTSPLFTTHQIDNCTEGCVVLAKSKEYCSTFHKKIRDKLVKKLYL 303

Query: 314 ALVAAPVSCGIITHYMQPAKLAPRIVSE 317
           AL AAPV  GI+THYM+PA LAPR++SE
Sbjct: 304 ALAAAPVPRGILTHYMRPANLAPRLISE 331
[Close]
BLAST of Spo16559.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QW75_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_139500 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 6.400e-109
Identity = 204/330 (61.82%), Postives = 249/330 (75.45%), Query Frame = 1 

		  

Query: 3   GNPVIIGGFGIGAVNFGPISTNPTISYHRLIGAPAKFRRLTLADTLVRKGKLA---VCC- 62
           GNP+ +G    G+     + ++   ++ RL GAP    R    +  + K K+    + C 
Sbjct: 13  GNPMSLGASNSGSNFINALFSSLRRTHFRLAGAPTTLWRTLATNRPISKNKVKREKINCS 72

Query: 63  ----------IASAPSAIGN--TKYDRLLPYVPTKHPPRVEHLVVLEASPVCDYISRTLN 122
                     I S+ S++ N   +Y RLLP   T  PPRVEHLVVLE SPVC+YIS++L+
Sbjct: 73  VSVFNNEASSITSSTSSVNNGYPEYSRLLPSPSTNAPPRVEHLVVLEESPVCEYISKSLD 132

Query: 123 LPPLYVADLIHFGAVYYALVHPKPPATATPEQVQVYEKFTSPHLLKQRQSLEGKTVSEAQ 182
           LPPLYVADLIHFGAVYYAL+ P PP TATPEQV +Y++FTSP LLKQR+S +GKT  EAQ
Sbjct: 133 LPPLYVADLIHFGAVYYALICPDPPVTATPEQVVLYKQFTSPELLKQRRSTKGKTFREAQ 192

Query: 183 KTFRITHIDQHVEVGTYLRVYVHPRRFPRCYEIDWKSRIIAVMESYVTLDKPAGTSVGGT 242
           KTFR+T I+++ EVGTYLRV+VHP+RFPRCYE+DW SR+IAV ESYV L+KPAGTSVGG+
Sbjct: 193 KTFRVTRIEENFEVGTYLRVHVHPKRFPRCYEVDWMSRVIAVTESYVVLNKPAGTSVGGS 252

Query: 243 SNNIEETCANFATRALGLTSPLLTTHQIDNCTEGCVVMARTEDYCSIFHEKIRDKKVKKY 302
           S+NIEE+CANF TRALGLTSPL TTHQIDNCTEGC+V+AR ++YCS FH+KIRDK VKK 
Sbjct: 253 SDNIEESCANFTTRALGLTSPLYTTHQIDNCTEGCLVLARDKEYCSKFHKKIRDKMVKKL 312

Query: 303 YLALVAAPVSCGIITHYMQPAKLAPRIVSE 317
           YLAL AAPV  GI THYM+PA LAPR+VSE
Sbjct: 313 YLALAAAPVPRGIYTHYMRPANLAPRLVSE 342
[Close]
BLAST of Spo16559.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LX47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G064140 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 1.700e-106
Identity = 188/250 (75.20%), Postives = 217/250 (86.80%), Query Frame = 1 

		  

Query: 67  GNTKYDRLLPYVPTKHPPRVEHLVVLEASPVCDYISRTLNLPPLYVADLIHFGAVYYALV 126
           G  +Y RLLP      PPRVEH+VVLEA PV +YI ++LNLPPLYVADLIHFGAVYYALV
Sbjct: 79  GYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADLIHFGAVYYALV 138

Query: 127 HPKPPATATPEQVQVYEKFTSPHLLKQRQSLEGKTVSEAQKTFRITHIDQHVEVGTYLRV 186
            P+PP TATPEQ+++++KFT P  LK R+S++GKTV EAQKTFRITH+D+ VEVGTYLRV
Sbjct: 139 CPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGTYLRV 198

Query: 187 YVHPRRFPRCYEIDWKSRIIAVMESYVTLDKPAGTSVGGTSNNIEETCANFATRALGLTS 246
           +VHP+RFPRCYEIDWKSRIIAV ESYV LDKPAGTSVGGT++NIEE+CA FATRALGLTS
Sbjct: 199 HVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTS 258

Query: 247 PLLTTHQIDNCTEGCVVMARTEDYCSIFHEKIRDKKVKKYYLALVAAPVSCGIITHYMQP 306
           PL TTHQIDNCTEGCV+ ART++YCSIFH KIR+KKV K YLAL AAPV  GIITHYM+P
Sbjct: 259 PLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAPVPMGIITHYMRP 318

Query: 307 AKLAPRIVSE 317
             +APR+VS+
Sbjct: 319 INIAPRLVSK 328
[Close]
BLAST of Spo16559.1 vs. ExPASy Swiss-Prot
Match: PUS6_ARATH (RNA pseudouridine synthase 6, chloroplastic OS=Arabidopsis thaliana GN=At4g21770 PE=2 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 2.800e-97
Identity = 177/291 (60.82%), Postives = 225/291 (77.32%), Query Frame = 1 

		  

Query: 31  RLIGAPAKFRRLTLADTLVRKGKLAVCCIASAPSAIGNTKYDRLLPYVPTKHPPRVEHLV 90
           R I +P +F  L+L  T  +          S+ S  G  +Y+RL+P      PPR+EH+V
Sbjct: 41  RFISSPKRFTCLSLLKTDSQNQTTL-----SSSSNSGYHEYNRLMPCPAYNLPPRIEHMV 100

Query: 91  VLEASP-VCDYISRTLNLPPLYVADLIHFGAVYYALVHPKPPATATPEQVQVYEKFTSPH 150
           VLE    V ++IS+ L+LPPLYVADLI FGAV+YALV PKPP TATPE++ ++E+ TSP 
Sbjct: 101 VLEDDVLVSEFISKQLDLPPLYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPS 160

Query: 151 LLKQRQSLEGKTVSEAQKTFRITHIDQHVEVGTYLRVYVHPRRFPRCYEIDWKSRIIAVM 210
           +LK+R S++GKTV EAQKTFR+TH +Q+ E GTYLRV+VHP+R PRCYEIDWKSRI+AV 
Sbjct: 161 VLKKRSSIKGKTVREAQKTFRVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVT 220

Query: 211 ESYVTLDKPAGTSVGGTSNNIEETCANFATRALGLTSPLLTTHQIDNCTEGCVVMARTED 270
           +SYV LDKPAGT+VGGT++NIEE+CA FA+RAL L  PL TTHQIDNCTEGCVV ART++
Sbjct: 221 DSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKE 280

Query: 271 YCSIFHEKIRDKKVKKYYLALVAAPVSCGIITHYMQPAKLAPRIVSEGNNQ 321
           YCS+FH KIR+K+VKK Y AL AAP+  GII+HYM+P  +APR+V+E + Q
Sbjct: 281 YCSVFHTKIRNKEVKKLYRALAAAPLPIGIISHYMRPKNMAPRLVAEDSIQ 326
[Close]
BLAST of Spo16559.1 vs. ExPASy Swiss-Prot
Match: PUS6_ORYSJ (RNA pseudouridine synthase 6, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0660400 PE=2 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 1.000e-91
Identity = 160/255 (62.75%), Postives = 200/255 (78.43%), Query Frame = 1 

		  

Query: 62  APSAIGNTKYDRLLPYVPTKHPPRVEHLVVLEASPVCDYISRTLNLPPLYVADLIHFGAV 121
           AP+      Y RLLP      PPR+EHLV  E     D+ISR+L LPPLYVADLI FGAV
Sbjct: 65  APATAAYPVYGRLLPCPLQDDPPRIEHLVAREDEVAVDFISRSLTLPPLYVADLIKFGAV 124

Query: 122 YYALVHPKPPATATPEQVQVYEKFTSPHLLKQRQSLEGKTVSEAQKTFRITHIDQHVEVG 181
           YYALV P+PP  A PE V+++ + T P +L +R+S++GKTV EAQKTFR+T  +Q +E G
Sbjct: 125 YYALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDPNQRLEAG 184

Query: 182 TYLRVYVHPRRFPRCYEIDWKSRIIAVMESYVTLDKPAGTSVGGTSNNIEETCANFATRA 241
           TYLRV+VHP+RFPRCYEIDWKSR+IAV ++YV LDKPA TSVGG ++NIEE+C  F +RA
Sbjct: 185 TYLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRA 244

Query: 242 LGLTSPLLTTHQIDNCTEGCVVMARTEDYCSIFHEKIRDKKVKKYYLALVAAPVSCGIIT 301
           LGL +PL+TTHQIDNC+EGCVV+++T+++CS+FH  IR+K+V K YLAL  APVS GIIT
Sbjct: 245 LGLETPLMTTHQIDNCSEGCVVLSKTKEFCSVFHGMIREKQVNKRYLALTTAPVSTGIIT 304

Query: 302 HYMQPAKLAPRIVSE 317
           HYM+P   APR+VSE
Sbjct: 305 HYMRPINRAPRLVSE 319
[Close]
BLAST of Spo16559.1 vs. TAIR (Arabidopsis)
Match: AT4G21770.1 (Pseudouridine synthase family protein)

HSP 1 Score: 356.7 bits (914), Expect = 1.600e-98
Identity = 177/291 (60.82%), Postives = 225/291 (77.32%), Query Frame = 1 

		  

Query: 31  RLIGAPAKFRRLTLADTLVRKGKLAVCCIASAPSAIGNTKYDRLLPYVPTKHPPRVEHLV 90
           R I +P +F  L+L  T  +          S+ S  G  +Y+RL+P      PPR+EH+V
Sbjct: 41  RFISSPKRFTCLSLLKTDSQNQTTL-----SSSSNSGYHEYNRLMPCPAYNLPPRIEHMV 100

Query: 91  VLEASP-VCDYISRTLNLPPLYVADLIHFGAVYYALVHPKPPATATPEQVQVYEKFTSPH 150
           VLE    V ++IS+ L+LPPLYVADLI FGAV+YALV PKPP TATPE++ ++E+ TSP 
Sbjct: 101 VLEDDVLVSEFISKQLDLPPLYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPS 160

Query: 151 LLKQRQSLEGKTVSEAQKTFRITHIDQHVEVGTYLRVYVHPRRFPRCYEIDWKSRIIAVM 210
           +LK+R S++GKTV EAQKTFR+TH +Q+ E GTYLRV+VHP+R PRCYEIDWKSRI+AV 
Sbjct: 161 VLKKRSSIKGKTVREAQKTFRVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVT 220

Query: 211 ESYVTLDKPAGTSVGGTSNNIEETCANFATRALGLTSPLLTTHQIDNCTEGCVVMARTED 270
           +SYV LDKPAGT+VGGT++NIEE+CA FA+RAL L  PL TTHQIDNCTEGCVV ART++
Sbjct: 221 DSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKE 280

Query: 271 YCSIFHEKIRDKKVKKYYLALVAAPVSCGIITHYMQPAKLAPRIVSEGNNQ 321
           YCS+FH KIR+K+VKK Y AL AAP+  GII+HYM+P  +APR+V+E + Q
Sbjct: 281 YCSVFHTKIRNKEVKKLYRALAAAPLPIGIISHYMRPKNMAPRLVAEDSIQ 326
The following BLAST results are available for this feature:
BLAST of Spo16559.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902122870|gb|KNA04012.1|6.9e-18199.6hypothetical protein SOVF_2036... [more]
gi|731369863|ref|XP_010665548.1|4.5e-13276.0PREDICTED: RNA pseudouridine s... [more]
gi|731369849|ref|XP_010665544.1|9.8e-11163.1PREDICTED: RNA pseudouridine s... [more]
gi|902187681|gb|KNA10963.1|9.1e-10961.8hypothetical protein SOVF_1395... [more]
gi|778658473|ref|XP_011652789.1|2.5e-10675.2PREDICTED: RNA pseudouridine s... [more]
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BLAST of Spo16559.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9Q9P9_SPIOL4.8e-18199.6Uncharacterized protein OS=Spi... [more]
A0A0J8E0U7_BETVU3.1e-13276.0Uncharacterized protein OS=Bet... [more]
A0A0J8B9P8_BETVU6.8e-11163.1Uncharacterized protein OS=Bet... [more]
A0A0K9QW75_SPIOL6.4e-10961.8Uncharacterized protein (Fragm... [more]
A0A0A0LX47_CUCSA1.7e-10675.2Uncharacterized protein OS=Cuc... [more]
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BLAST of Spo16559.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PUS6_ARATH2.8e-9760.8RNA pseudouridine synthase 6, ... [more]
PUS6_ORYSJ1.0e-9162.7RNA pseudouridine synthase 6, ... [more]
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BLAST of Spo16559.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G21770.11.6e-9860.8Pseudouridine synthase family ... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006145Pseudouridine synthase, RsuA/RluB/C/D/E/FPFAMPF00849PseudoU_synth_2coord: 212..306
score: 3.8
IPR020103Pseudouridine synthase, catalytic domainunknownSSF55120Pseudouridine synthasecoord: 197..305
score: 1.6
NoneNo IPR availablePANTHERPTHR11079CYTOSINE DEAMINASEcoord: 160..170
score: 1.7E-31coord: 204..316
score: 1.7
NoneNo IPR availablePANTHERPTHR11079:SF79RNA PSEUDOURIDINE SYNTHASE 6, CHLOROPLASTICcoord: 160..170
score: 1.7E-31coord: 204..316
score: 1.7

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0006508 proteolysis
biological_process GO:0010100 negative regulation of photomorphogenesis
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0019915 lipid storage
biological_process GO:0009880 embryonic pattern specification
biological_process GO:0006281 DNA repair
biological_process GO:0006338 chromatin remodeling
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0048825 cotyledon development
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0016024 CDP-diacylglycerol biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0010072 primary shoot apical meristem specification
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0048481 plant ovule development
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0051301 cell division
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0030001 metal ion transport
biological_process GO:0006378 mRNA polyadenylation
biological_process GO:0009308 amine metabolic process
biological_process GO:0008152 metabolic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0000209 protein polyubiquitination
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0007062 sister chromatid cohesion
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0009717 isoflavonoid biosynthetic process
biological_process GO:0016042 lipid catabolic process
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0046486 glycerolipid metabolic process
biological_process GO:0006783 heme biosynthetic process
biological_process GO:0009451 RNA modification
biological_process GO:0001510 RNA methylation
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0010564 regulation of cell cycle process
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0080147 root hair cell development
biological_process GO:0045595 regulation of cell differentiation
biological_process GO:0009909 regulation of flower development
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0042545 cell wall modification
biological_process GO:0050826 response to freezing
biological_process GO:0006396 RNA processing
biological_process GO:0010162 seed dormancy process
biological_process GO:0009845 seed germination
biological_process GO:0048575 short-day photoperiodism, flowering
biological_process GO:0043085 positive regulation of catalytic activity
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005829 cytosol
cellular_component GO:0009507 chloroplast
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005618 cell wall
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0009506 plasmodesma
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031011 Ino80 complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
cellular_component GO:0005849 mRNA cleavage factor complex
molecular_function GO:0043023 ribosomal large subunit binding
molecular_function GO:0004806 triglyceride lipase activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0033987 2-hydroxyisoflavanone dehydratase activity
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0052689 carboxylic ester hydrolase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0016887 ATPase activity
molecular_function GO:0003924 GTPase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004045 aminoacyl-tRNA hydrolase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005507 copper ion binding
molecular_function GO:0048038 quinone binding
molecular_function GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0050897 cobalt ion binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo244160.79Barchart | Table
Spo187840.76Barchart | Table
Spo030070.75Barchart | Table
Spo065080.75Barchart | Table
Spo030060.75Barchart | Table
Spo238740.74Barchart | Table
Spo232980.73Barchart | Table
Spo150920.73Barchart | Table
Spo044970.73Barchart | Table
Spo250030.73Barchart | Table
Spo280410.72Barchart | Table
Spo182200.71Barchart | Table
Spo126990.71Barchart | Table
Spo237130.71Barchart | Table
Spo061010.71Barchart | Table
Spo217160.71Barchart | Table
Spo208960.71Barchart | Table
Spo071710.71Barchart | Table
Spo063410.70Barchart | Table
Spo011830.70Barchart | Table
Spo128770.70Barchart | Table
Spo156410.70Barchart | Table
Spo192310.69Barchart | Table
Spo249160.68Barchart | Table
Spo060970.68Barchart | Table
Spo233960.68Barchart | Table
Spo127570.68Barchart | Table
Spo184070.67Barchart | Table
Spo270400.67Barchart | Table
Spo108630.67Barchart | Table
Spo159340.67Barchart | Table
Spo170800.67Barchart | Table
Spo244200.67Barchart | Table
Spo145130.67Barchart | Table
Spo102110.67Barchart | Table
Spo103000.67Barchart | Table
Spo242040.67Barchart | Table
Spo007540.67Barchart | Table
Spo116260.66Barchart | Table
Spo024030.66Barchart | Table
Spo174710.66Barchart | Table
Spo067170.66Barchart | Table
Spo193050.66Barchart | Table
Spo202350.66Barchart | Table
Spo067110.66Barchart | Table
Spo049140.66Barchart | Table
Spo238290.66Barchart | Table
Spo024700.66Barchart | Table
Spo113330.66Barchart | Table
Spo116930.66Barchart | Table
Spo171510.65Barchart | Table
Spo139340.65Barchart | Table
Spo029310.65Barchart | Table
Spo214060.65Barchart | Table
Spo026010.65Barchart | Table