Spo16566 (gene) | SpinachBase

Overview


Name	Spo16566
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_00596 : 292135 .. 294872 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTGGTGTTGGAATCTCCAGGCTGTCTGTTTCCTCCTATTCCTGCTTTATCATGGAAATTGAATTTGTATGTAAGTAACGCATGCTTGTTCTTCGTGGTGGTGTCAAAAGTTTCTTTAATTATATTAATCATCAATTTCTCGGTATAATGTTGATCTCTATCTCTATATGATTGGCATTACTAAGATCAGTGGTATGTTAAATCTCAGGATTGCTTTCTTGCTTGTTGGAAATTACAGTAATTGATTTCCACTCTCTCTGAGTCATGTGTGGTATTGATTTCTTTCTCCCAAGGCTTGTCTTATTTTAGGAAATTTTATTTGTTGTTATTCTTTTTTGGGTTTATTTCTAGCTTAAGCGCCCTGGTATGTGTACTATTTTCTGTTTTTGGTTAGTTGTTGGTAAGTTGTTTTCAATTTTTTATATTTCTATTTGTGACTTGTTGGATTATAGCTTTGTGCTCGAGGTTGGGGCGTAGGGATGTAACTGTTCACATCCAGGTAACCTTTTCTGTAGAACCAGTATATTGTTGCAGACTTCTGACTTGTGATCTTGTGGCTTACTCGTATGAATTCTTTATTGGAAATTTTTGAATTTGTTGTTTTCCTGTGGTTACTTCTTGATAAGTCGTTTGTTGTTTTGGATACGGGTTATAATTTGATTAAAAAGTTCGTGTTAGATTTTGGTTTTCTTTTGATGATTATGCAGTTGCTTCGCTTAAATAGATTTTGATGATTATGCAGTTGCTGCGCCTAAAGGTTAGTGTTAGATTTTGGTTAGATTTTGATGATTATGCAGTTGCTTCGACTAAAGGTTCCGTGTTGGGTTTGGTTTTAATTTTGAGGATTATGCAATTGGTTGTATAGTCGGGTGATCAAGTAGGTCGTTTGTTGGTTTGCATTCAATATGTCTGTTACAAATGCGGTTGCGTTGCTTGTAGTCGCTAAACTCTTGCATATTTCAGGCGTTCTGTTTCTGATAACTATGCTTTTGTCCGAGTCTCCTTGTGATTCTGTGATGATGAAATAAGTTGAGGATTTGGAGATAAAAGTTTGTTATGAAGAACTCATATCGTATAGATGATGGTATTTACTCGATTTAGATTCCCTTGTTACTATATAGGAGCCCTCTGTGCTGTTGATTTCAGACTTCATGCTTTGAATTTCTTAATAATATCTGCAACGGAAGTTTCCTTCGGTTCTCCCCTGCATTGGTAGACTGTATTATGACTTCTGGTTTGCCTTAAAGCATATGGCTTATATATTCATGATATTTGTGTTGTAAATATTGCTAAATACCTAGTTTTGAACGATACTAACTTAAACATGTGTTTTATTTAGAATGATGAACTTTTAACAAATTTTTGATTTTTGTAAGTAATTCATAAGTCATATTTTTATTTGAAACAAAATTGTTTCCGTTTTAATTTTCCCTTTTAGGTTTGATTTTGATACAGGAAAAGCATGAGAAGTCGAAATCCAAATAACTTGATTCCTTACTAATAGTCATATTTTCAGTTGAATCAAAATTTATTTTTCATTTCCTAATTATTTTTGCAAGCTTCCCCAGATCTTTAGTTTCTTCATAAATGAAGTTGCTTTTGAAAGTGCCAAGTATTGTCCAGAGACCAAAGTATGAGGATTCAGAGTGGTTGACTAGTCACCTGAGATTTTATGACATGCGACATTTATGGGACTGGATTTTGAGTTCCGAATTCTCCAAGTATTGGTTAATTTACTGAATTTTTGCTGGACAATTTGTGTTTTGTTTTTTCTGCTGCAGTTGCTTCATGTTGGTTGAATTATTCTGACTTATGGGCTTTGGTGTTGGAATCTCCAGTCTAATGTTGCTGTCTGGTTTCCTCCTATTCCTGTTTTATCATGGAAATTGAATTTGTATGTAAGTAACGCATGCTTATTCTTCGTGGTGGTGTCAAAAGTTTCTTTAATTATATTAACTACCAATTTATCAGTATAATGTTGATCTCCATCCCTACGTGGTTAGTTTTACTAAGATCAGTGGCACGTTAATTCTCAGGATTGCTTTCTTGCTTGTTGGAGATTACAGTAATTGATTTCCACTCTCTCTGAGTCATGTGTGGTATTGGTTTCTTTCTCTCAAGGCTTGTGTTATGTTAGGAAACTTTTTTTGCTGTTATTCTTTTTTGGGTCTATTTCTAGCTTAAGCTCCCCGATATGTGTACTCTTTTCTGTCCTTGGGTAAGTGTTGGTAATTTGTTTTTTAATTTTTTATTTTTCTATTATTGACTTGTGGGATTATAGCTTTGTGCTCGTGGTGGGGGCGTAGGGATGTAACTGTTCACATCCAGGTAACCTTTTCTGTAGAACCACTATATATTTGCAGACTTCTGACTTGTGATCTTGTGGCTTACTCGTAAGAGTTTTTATTTGTGATTTTTGAATTTGTTGTTTTCCTATGGTTACTTCTTGATACGTGGTACCTGCAATTGGTGACTGGGAATCTGGGATGAAGAATTTTCTGGTTTGTTTCTGTTACAGACAACAATATTTGGTAGTTCTCATGGTGTGTAATACTTAGGATTATAGTTTAGTTTAGAATCTTTTTGTCCACAGAGACCCCTTCATCCTTCCAACTATAATTTTTCCCTTTGAAGTCGCATTTTATCGACATGGACATGGTTTATCAAATCTATGGGGTTGAGGAAGTTTCTTTCCTGTTTGTCCATTTCCCACATTTATCTACATTCGCCTGA

mRNA sequence

ATGGCTTTGGTGTTGGAATCTCCAGGCTGTCTGTTTCCTCCTATTCCTGCTTTATCATGGAAATTGAATTTGTATTCTAATGTTGCTGTCTGGTTTCCTCCTATTCCTGTTTTATCATGGAAATTGAATTTGTATTCGCATTTTATCGACATGGACATGGTTTATCAAATCTATGGGGTTGAGGAAGTTTCTTTCCTGTTTGTCCATTTCCCACATTTATCTACATTCGCCTGA

Coding sequence (CDS)

ATGGCTTTGGTGTTGGAATCTCCAGGCTGTCTGTTTCCTCCTATTCCTGCTTTATCATGGAAATTGAATTTGTATTCTAATGTTGCTGTCTGGTTTCCTCCTATTCCTGTTTTATCATGGAAATTGAATTTGTATTCGCATTTTATCGACATGGACATGGTTTATCAAATCTATGGGGTTGAGGAAGTTTCTTTCCTGTTTGTCCATTTCCCACATTTATCTACATTCGCCTGA

Protein sequence

MALVLESPGCLFPPIPALSWKLNLYSNVAVWFPPIPVLSWKLNLYSHFIDMDMVYQIYGVEEVSFLFVHFPHLSTFA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo16566.1	Spo16566.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo16566.1 vs. NCBI nr
BLAST of Spo16566.1 vs. UniProtKB/TrEMBL
BLAST of Spo16566.1 vs. ExPASy Swiss-Prot
BLAST of Spo16566.1 vs. TAIR (Arabidopsis)

BLAST of Spo16566.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo16566.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo16566.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo16566.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0006651	diacylglycerol biosynthetic process
biological_process	GO:0006687	glycosphingolipid metabolic process
biological_process	GO:0009395	phospholipid catabolic process
biological_process	GO:0048868	pollen tube development
biological_process	GO:0032502	developmental process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
molecular_function	GO:0047874	dolichyldiphosphatase activity
molecular_function	GO:0008195	phosphatidate phosphatase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0046983	protein dimerization activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo14424	0.79	Barchart \| Table
Spo18637	0.74	Barchart \| Table
Spo08403	0.69	Barchart \| Table
Spo23833	0.69	Barchart \| Table
Spo04985	0.69	Barchart \| Table
Spo12543	0.68	Barchart \| Table
Spo24148	0.68	Barchart \| Table
Spo07824	0.68	Barchart \| Table
Spo05192	0.67	Barchart \| Table
Spo11610	0.66	Barchart \| Table
Spo21967	0.66	Barchart \| Table
Spo10021	0.66	Barchart \| Table
Spo17220	0.66	Barchart \| Table
Spo19609	0.66	Barchart \| Table
Spo26491	0.65	Barchart \| Table
Spo14826	0.65	Barchart \| Table
Spo16076	0.65	Barchart \| Table