Spo16606 (gene)

Overview
NameSpo16606
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionSenescence-associated protein
LocationSpoScf_00340 : 405253 .. 406503 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCTTGGCTGCCACAAGCTAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCAGAAGACTTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTCGTACTGAAAATCAGAATCAAACGAGCTTTTACCCTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTTATCCTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTAACAATGTCCTCCGCCCGGATCGGCCCGCAAAGCAGACCTTAGGTCTAAAAAGAGGGGCAGTGCCCCGCTTCAGACTCACGGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCATTTGCGCCGAAGCTCCCACNAGTAAAATAACGTTAAAAGTAGTGGTATTTCATTTGCGCCGAAGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTTGGACTAGAGTCAAGCTCAACAGATCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCACGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTNTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTACGTCAACATCCGTGAGGACTATCGCAATGCTTTGTTTCAATTAAACAGTCGAATTCCCCTTGTCCATACCAGTTCTGAGCTGACTGTTCGACGTCCGGGGAAGGCCCCCGAGGGGGCCGTTCCCAGTCCGTCCCCTGGTCGGCACGCGGCGACCCGCTCTCGCCACGAGAGCAGCTCGAGCAGTCCGCCGATAGCCGACGGGTNGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCCGTCGCGTATTTAAGTCGTCTGCAAAGGATTCAACCCGCCACTCGGGAGGAATTGTACTTCAAGGCAGCCCACGCGGCGCATCCGCCGCGCGGACTTAGCCTACGACACGTGCCCTTGGGGGCCGAAGCCCCTACTGTAGGACGGCAATCGGGTGGCGGGCGCATGCGTCGCTTCTGGCCCGGATTCTGA

mRNA sequence

ATGAACTCTTGGCTGCCACAAGCTAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCAGAAGACTTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTCGTACTGAAAATCAGAATCAAACGAGCTTTTACCCTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTTATCCTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTAACAATGTCCTCCGCCCGGATCGGCCCGCAAAGCAGACCTTAGGTCTAAAAAGAGGGGCAGTGCCCCGCTTCAGACTCACGGAGATTCAACCCGCCACTCGGGAGGAATTGTACTTCAAGGCAGCCCACGCGGCGCATCCGCCGCGCGGACTTAGCCTACGACACGTGCCCTTGGGGGCCGAAGCCCCTACTGTAGGACGGCAATCGGGTGGCGGGCGCATGCGTCGCTTCTGGCCCGGATTCTGA

Coding sequence (CDS)

ATGAACTCTTGGCTGCCACAAGCTAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCAGAAGACTTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTCGTACTGAAAATCAGAATCAAACGAGCTTTTACCCTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTTATCCTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTAACAATGTCCTCCGCCCGGATCGGCCCGCAAAGCAGACCTTAGGTCTAAAAAGAGGGGCAGTGCCCCGCTTCAGACTCACGGAGATTCAACCCGCCACTCGGGAGGAATTGTACTTCAAGGCAGCCCACGCGGCGCATCCGCCGCGCGGACTTAGCCTACGACACGTGCCCTTGGGGGCCGAAGCCCCTACTGTAGGACGGCAATCGGGTGGCGGGCGCATGCGTCGCTTCTGGCCCGGATTCTGA

Protein sequence

MNSWLPQASYPCGNFSDTSSFKFRRLKGSLGHAFTVRIRTENQNQTSFYPSVPHEISVLVELILGHLRYLLTDVPPQPNSPPNNVLRPDRPAKQTLGLKRGAVPRFRLTEIQPATREELYFKAAHAAHPPRGLSLRHVPLGAEAPTVGRQSGGGRMRRFWPGF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo16606.1Spo16606.1mRNA


Homology
[Close]
BLAST of Spo16606.1 vs. NCBI nr
Match: gi|870838467|gb|KMS94638.1| (hypothetical protein BVRB_016760 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 211.1 bits (536), Expect = 1.500e-51
Identity = 101/110 (91.82%), Postives = 105/110 (95.45%), Query Frame = 1 

		  

Query: 1   MNSWLPQASYPCGNFSDTSSFKFRRLKGSLGHAFTVRIRTENQNQTSFYPSVPHEISVLV 60
           +N+WLPQASYPCGNFSDTSSFKFRR KGSLGHAFTV IRTENQNQTSFYPSVPHEISVLV
Sbjct: 16  LNAWLPQASYPCGNFSDTSSFKFRRSKGSLGHAFTVCIRTENQNQTSFYPSVPHEISVLV 75

Query: 61  ELILGHLRYLLTDVPPQPNSPPNNVLRPDRPAKQTLGLKRGAVPRFRLTE 111
           ELILGHLRY LTDVPPQPNSPP+NVL PDRPAK+TLGLKRGAVP FRLTE
Sbjct: 76  ELILGHLRYHLTDVPPQPNSPPDNVLHPDRPAKRTLGLKRGAVPCFRLTE 125
[Close]
BLAST of Spo16606.1 vs. NCBI nr
Match: gi|970066912|ref|XP_015060514.1| (PREDICTED: uncharacterized protein LOC107006481 [Solanum pennellii])

HSP 1 Score: 208.0 bits (528), Expect = 1.300e-50
Identity = 98/110 (89.09%), Postives = 104/110 (94.55%), Query Frame = 1 

		  

Query: 1   MNSWLPQASYPCGNFSDTSSFKFRRLKGSLGHAFTVRIRTENQNQTSFYPSVPHEISVLV 60
           MN+WLPQASYPCGNFSDTSSF+FRR KGSLGHAFTVRIRT NQNQTSFYPSVPHEISVLV
Sbjct: 16  MNAWLPQASYPCGNFSDTSSFEFRRSKGSLGHAFTVRIRTGNQNQTSFYPSVPHEISVLV 75

Query: 61  ELILGHLRYLLTDVPPQPNSPPNNVLRPDRPAKQTLGLKRGAVPRFRLTE 111
           ELILGHLRYLLTDVPPQPNSPP+NV RPD+PAK+ LG KRGAVPRFR T+
Sbjct: 76  ELILGHLRYLLTDVPPQPNSPPDNVFRPDQPAKRALGPKRGAVPRFRFTK 125
[Close]
BLAST of Spo16606.1 vs. NCBI nr
Match: gi|902125768|gb|KNA04075.1| (hypothetical protein SOVF_202950, partial [Spinacia oleracea])

HSP 1 Score: 205.7 bits (522), Expect = 6.200e-50
Identity = 100/110 (90.91%), Postives = 102/110 (92.73%), Query Frame = 1 

		  

Query: 1   MNSWLPQASYPCGNFSDTSSFKFRRLKGSLGHAFTVRIRTENQNQTSFYPSVPHEISVLV 60
           MNSWLPQASYP GNF DTSSFKFRRLKGSLGHAF VRIRTENQNQTSFYP VPHEI VLV
Sbjct: 13  MNSWLPQASYPWGNFFDTSSFKFRRLKGSLGHAFRVRIRTENQNQTSFYPFVPHEIYVLV 72

Query: 61  ELILGHLRYLLTDVPPQPNSPPNNVLRPDRPAKQTLGLKRGAVPRFRLTE 111
           ELILGH  YLLTDVPPQPNSPP+NVLRPDRP K+TLGLKRGAVPRFRLTE
Sbjct: 73  ELILGHPCYLLTDVPPQPNSPPDNVLRPDRPTKRTLGLKRGAVPRFRLTE 122
[Close]
BLAST of Spo16606.1 vs. NCBI nr
Match: gi|565451846|ref|XP_006286149.1| (hypothetical protein CARUB_v10007708mg [Capsella rubella])

HSP 1 Score: 199.9 bits (507), Expect = 3.400e-48
Identity = 94/110 (85.45%), Postives = 99/110 (90.00%), Query Frame = 1 

		  

Query: 1   MNSWLPQASYPCGNFSDTSSFKFRRLKGSLGHAFTVRIRTENQNQTSFYPSVPHEISVLV 60
           MN+WLPQASYPCGNFSDTSSFKFRR KGS+GHAFTVRIRTENQNQTSFYP VPHEISVLV
Sbjct: 16  MNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLV 75

Query: 61  ELILGHLRYLLTDVPPQPNSPPNNVLRPDRPAKQTLGLKRGAVPRFRLTE 111
           ELILGHLRYLLTDVPPQPNSPP+NVLRPD+  KQ  G K G +PR R TE
Sbjct: 76  ELILGHLRYLLTDVPPQPNSPPDNVLRPDQLPKQAFGPKTGVIPRLRFTE 125
[Close]
BLAST of Spo16606.1 vs. NCBI nr
Match: gi|565422705|ref|XP_006279317.1| (hypothetical protein CARUB_v10012758mg, partial [Capsella rubella])

HSP 1 Score: 198.0 bits (502), Expect = 1.300e-47
Identity = 93/109 (85.32%), Postives = 98/109 (89.91%), Query Frame = 1 

		  

Query: 1   MNSWLPQASYPCGNFSDTSSFKFRRLKGSLGHAFTVRIRTENQNQTSFYPSVPHEISVLV 60
           MN+WLPQASYPCGNFSDTSSFKFRR KGS+GHAFTVRIRTENQNQTSFYP VPHEISVLV
Sbjct: 16  MNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLV 75

Query: 61  ELILGHLRYLLTDVPPQPNSPPNNVLRPDRPAKQTLGLKRGAVPRFRLT 110
           ELILGHLRYLLTDVPPQPNSPP+NVLRPD+  KQ  G K G +PR R T
Sbjct: 76  ELILGHLRYLLTDVPPQPNSPPDNVLRPDQLPKQAFGPKTGVIPRLRFT 124
[Close]
BLAST of Spo16606.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B460_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_016760 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.000e-51
Identity = 101/110 (91.82%), Postives = 105/110 (95.45%), Query Frame = 1 

		  

Query: 1   MNSWLPQASYPCGNFSDTSSFKFRRLKGSLGHAFTVRIRTENQNQTSFYPSVPHEISVLV 60
           +N+WLPQASYPCGNFSDTSSFKFRR KGSLGHAFTV IRTENQNQTSFYPSVPHEISVLV
Sbjct: 16  LNAWLPQASYPCGNFSDTSSFKFRRSKGSLGHAFTVCIRTENQNQTSFYPSVPHEISVLV 75

Query: 61  ELILGHLRYLLTDVPPQPNSPPNNVLRPDRPAKQTLGLKRGAVPRFRLTE 111
           ELILGHLRY LTDVPPQPNSPP+NVL PDRPAK+TLGLKRGAVP FRLTE
Sbjct: 76  ELILGHLRYHLTDVPPQPNSPPDNVLHPDRPAKRTLGLKRGAVPCFRLTE 125
[Close]
BLAST of Spo16606.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q9Y2_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_202950 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.300e-50
Identity = 100/110 (90.91%), Postives = 102/110 (92.73%), Query Frame = 1 

		  

Query: 1   MNSWLPQASYPCGNFSDTSSFKFRRLKGSLGHAFTVRIRTENQNQTSFYPSVPHEISVLV 60
           MNSWLPQASYP GNF DTSSFKFRRLKGSLGHAF VRIRTENQNQTSFYP VPHEI VLV
Sbjct: 13  MNSWLPQASYPWGNFFDTSSFKFRRLKGSLGHAFRVRIRTENQNQTSFYPFVPHEIYVLV 72

Query: 61  ELILGHLRYLLTDVPPQPNSPPNNVLRPDRPAKQTLGLKRGAVPRFRLTE 111
           ELILGH  YLLTDVPPQPNSPP+NVLRPDRP K+TLGLKRGAVPRFRLTE
Sbjct: 73  ELILGHPCYLLTDVPPQPNSPPDNVLRPDRPTKRTLGLKRGAVPRFRLTE 122
[Close]
BLAST of Spo16606.1 vs. UniProtKB/TrEMBL
Match: R0FAL5_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10007708mg PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.400e-48
Identity = 94/110 (85.45%), Postives = 99/110 (90.00%), Query Frame = 1 

		  

Query: 1   MNSWLPQASYPCGNFSDTSSFKFRRLKGSLGHAFTVRIRTENQNQTSFYPSVPHEISVLV 60
           MN+WLPQASYPCGNFSDTSSFKFRR KGS+GHAFTVRIRTENQNQTSFYP VPHEISVLV
Sbjct: 16  MNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLV 75

Query: 61  ELILGHLRYLLTDVPPQPNSPPNNVLRPDRPAKQTLGLKRGAVPRFRLTE 111
           ELILGHLRYLLTDVPPQPNSPP+NVLRPD+  KQ  G K G +PR R TE
Sbjct: 76  ELILGHLRYLLTDVPPQPNSPPDNVLRPDQLPKQAFGPKTGVIPRLRFTE 125
[Close]
BLAST of Spo16606.1 vs. UniProtKB/TrEMBL
Match: R0GIU6_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10012758mg PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 9.000e-48
Identity = 93/109 (85.32%), Postives = 98/109 (89.91%), Query Frame = 1 

		  

Query: 1   MNSWLPQASYPCGNFSDTSSFKFRRLKGSLGHAFTVRIRTENQNQTSFYPSVPHEISVLV 60
           MN+WLPQASYPCGNFSDTSSFKFRR KGS+GHAFTVRIRTENQNQTSFYP VPHEISVLV
Sbjct: 16  MNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLV 75

Query: 61  ELILGHLRYLLTDVPPQPNSPPNNVLRPDRPAKQTLGLKRGAVPRFRLT 110
           ELILGHLRYLLTDVPPQPNSPP+NVLRPD+  KQ  G K G +PR R T
Sbjct: 76  ELILGHLRYLLTDVPPQPNSPPDNVLRPDQLPKQAFGPKTGVIPRLRFT 124
[Close]
BLAST of Spo16606.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B5R0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_011850 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.600e-47
Identity = 96/116 (82.76%), Postives = 103/116 (88.79%), Query Frame = 1 

		  

Query: 1   MNSWLPQASYPCGNFSDTSSFKFRRLKGSLGHAFTVRIRTENQNQTSFYPSVPHEISVLV 60
           MN+WLPQASYPCGNFSDTSSFKF+R KGSLGHAFTVRIRTENQNQTSFYPSVP EISVLV
Sbjct: 16  MNAWLPQASYPCGNFSDTSSFKFQRSKGSLGHAFTVRIRTENQNQTSFYPSVPREISVLV 75

Query: 61  ELILGHLRYLLTDVPPQPNSPPNNVLRPDRPAKQTLGLKRGAVPRFRLTEIQPATR 117
           ELILGHLRYLLTDVPPQPNSP +NVL PDRPAK+TLGLKRG+    + T I  A +
Sbjct: 76  ELILGHLRYLLTDVPPQPNSPHDNVLLPDRPAKRTLGLKRGSKNNVKSTGISLAPK 131
[Close]
BLAST of Spo16606.1 vs. ExPASy Swiss-Prot
Match: ART2_YEAST (Putative uncharacterized protein ART2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ART2 PE=5 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.500e-15
Identity = 41/56 (73.21%), Postives = 43/56 (76.79%), Query Frame = 1 

		  

Query: 36 VRIRTENQNQTSFYPSVPHEISVLVELILGHLRYLLTDVPPQPNSPPNNVLRPDRP 92
          V I TENQNQ  FYP V  EISVL E  LGHLRY LTDVPPQPNSPP+NV  PD+P
Sbjct: 2  VCIHTENQNQGGFYPFVLLEISVLHEPPLGHLRYRLTDVPPQPNSPPDNVFNPDQP 57
[Close]
BLAST of Spo16606.1 vs. ExPASy Swiss-Prot
Match: RRT15_YEAST (Regulator of rDNA transcription protein 15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRT15 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.300e-10
Identity = 35/46 (76.09%), Postives = 35/46 (76.09%), Query Frame = 1 

		  

Query: 36 VRIRTENQNQTSFYPSVPHEISVLVELILGHLRYLLTDVPPQPNSP 82
          V I TENQNQ  FYP V  EISVL E  LGHLRY LTDVPPQPNSP
Sbjct: 2  VCIHTENQNQGDFYPFVLLEISVLHESPLGHLRYRLTDVPPQPNSP 47
The following BLAST results are available for this feature:
BLAST of Spo16606.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|870838467|gb|KMS94638.1|1.5e-5191.8hypothetical protein BVRB_0167... [more]
gi|970066912|ref|XP_015060514.1|1.3e-5089.0PREDICTED: uncharacterized pro... [more]
gi|902125768|gb|KNA04075.1|6.2e-5090.9hypothetical protein SOVF_2029... [more]
gi|565451846|ref|XP_006286149.1|3.4e-4885.4hypothetical protein CARUB_v10... [more]
gi|565422705|ref|XP_006279317.1|1.3e-4785.3hypothetical protein CARUB_v10... [more]
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BLAST of Spo16606.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8B460_BETVU1.0e-5191.8Uncharacterized protein OS=Bet... [more]
A0A0K9Q9Y2_SPIOL4.3e-5090.9Uncharacterized protein (Fragm... [more]
R0FAL5_9BRAS2.4e-4885.4Uncharacterized protein OS=Cap... [more]
R0GIU6_9BRAS9.0e-4885.3Uncharacterized protein (Fragm... [more]
A0A0J8B5R0_BETVU2.6e-4782.7Uncharacterized protein OS=Bet... [more]
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BLAST of Spo16606.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ART2_YEAST6.5e-1573.2Putative uncharacterized prote... [more]
RRT15_YEAST1.3e-1076.0Regulator of rDNA transcriptio... [more]
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BLAST of Spo16606.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33047FAMILY NOT NAMEDcoord: 1..104
score: 1.4

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0009507 chloroplast
molecular_function GO:0003824 catalytic activity
molecular_function GO:0046872 metal ion binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo131690.78Barchart | Table
Spo161430.72Barchart | Table
Spo116940.71Barchart | Table
Spo214640.66Barchart | Table