Spo16925 (gene)

Overview
NameSpo16925
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPhotosystem I reaction center subunit iv b
Locationchr6 : 22199198 .. 22201723 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGAAGACAGGTGGCAAAGTACTAATGGTTGAAATAATATTTCCTCCCTCATCTTTTCAACGAAAATCCAAAATCCAAAAATGATTCTGATCATGAAAAACACAAAGCTACTAGTTCAAAGGGACTCCCTCCTTTTCACTACTTGCAAAATTTATTTCTTGTAAGAAGAAAAAACAGAGAGAGAGAGGGAGAAAATTAATAATGGCTAGCATTGCATCATCAGTAGCTGTTAGGCTTGGGCTAACACAAGTGTTGCCCAACAAAAACTTCTCATCTCCAAGGAGCACTAGGCTTGTTGTCCGGGCTGCTGAAGAGGCTGCTGCTGCACCCGCTGCCGCATCGCCCGAAGGTGAAGCACCCAAAGCTGCTGCTAAGCCACCACCAATTGGCCCCAAGAGGGGTTCTAAGGTATTACTTTTTAAAGAGTTTAAGGTGTAGTTTTGTTACTTGCATCCATGTTACATATCTTTTGTTATTATAGATAAAAGATAAACATATACTATGGTTAGATACTATATATAGAGAGATTAATACTTCTGGATATTGTAACTTTGTTTATCAGTATAATACAAACTACTTATGAGTGTTTTTGAGTGTTATTGATGTTGAGGTGTTGGTTCGATGTTTTAGGTTAAGTTTACCAGGTTGTATTAGAATTTAGAAACTAAACTCGCTATTAGTGTAGCAGGGTTTATGAATAATCTTGACAGAAACCTAAATTTAGACCTTTATTAGGATAGCGCATACTAAGACTGTTGCACAGAAGTCTGTAGACCATGATTGTTCCTGTACTGGAAGCCTGAGGAACGGTAACTTGCCTGCAAAATGTTTAGGAGACAATAAGTCAATATGATAGGAATATGATAACAAGAAACCAAAAGTTAAAGGGGCATAAAAAAGCTTTACCATATGCAGTACTCGAAATATAATTAATGTGTACTGCTATATGATGCTTGGACTCTGCTAGAGTGTCGGACATTGGCACGTGTTCAAGTGCTATACATGGCCGTCTCATGGAGGTTTTTGCATCATTTTCATCCATGTGAAGCTTGTACCAATGTTCCAGTGTCGATTATCAAACACGAATACTTGAGTAAAAGAGAGTTGGAGTAACATAAGACTGTGAATATGAAGCAATAATTAAGGAGTAATAAAATAAAATTGGTACCTTGCAGGTGAGAATCATGAGAAAGGAATCATACTGGTACAAGGGTGTTGGCTCAGTGGTTGCTGTTGATCAGGTCATCAATCTTTCCCCTCAAATTTTCATTTACTGCTAGTTAATTTTCGAAAACCACTGACGTAACTGAGAAAATGTCTTATGCAGGATCCAAAAACAAGATATCCAGTTGTGGTGAGATTCAACAAGGTGAATTACGCGAATGTATCAACCAACAACTACGCACTGGATGAGATTCAAGAAGTTGCATGATCAACTCTGTTATAAGTTTGCGAAATTTCCAAACATTTAGATGAATTAGGAGCTATTTCTGCTGTGTGTATCCAATGTAAATCTACTTCTTTTGAGTATCAACTTCTTTGCCCATGAAACTTGTCAGATATGCTCCTCATCATCCTAAGTATTCACCATATTCTTTCCTTATTTATAGAATACTTGACCCATCAGTAACCGTGCTTCTTCTGTTTGGTCGTTACGTAACAGAAGTTTACTTAGCAGAGTAAATAGCAGTACTGAAATACTAACAAGATTATGCAACCCAGGAAATGAGAAACAATTCTGACAAACCTAGTAGTATGTCACAAACTTACAATTCACACTAACTTGTGATTCTAACTTCCTTCTGCAACTCCTAAATTTCACTCTTTCGGACTAATTTAACAATGTACAATACACTGATATAGTCATGATACTGCCATCTCAAGTATGGGAAAAATCACCCATTCTCGAAGGTTTTTCTTTCCGAAACCTCGAAATACCCTTTGTATTTTAAAGTAACTCTAAGAAATATCCACAGCAAGTAATACAAAGTAAGTAATATACTGGTAGAGATTTTTTAGGTACAACTCCAACGACTTTCAGCACAAAAATTGGTGCATTCTTCAAGCAATTGCAGAGAGAGGCAGAAGTTCATGGCACTTGCTTTTCGTTGACACAGAAATCAAATCAGCCAACATGCAATGTGCACAAGAATCAAGCTCACTAACGGTCTCACCTCTCAAACTAGTGTCGGTTGATATTCCCTAGTGACTCCATTACTCCAAGCCTTCATTAACCTTTTAATCTGTAACCTGAACATAGCTGGTTTCTCGGTTATAAGCATGATGTTGTCTGTGTTGCCCAATGTTCAAAATTTATACTATTGTAATCAATTTCGTTCATATTAAAACTAAAAGGGCTTCAGAACAGGAAACCTGAAGAAATACCTCCCTCAGTTCTGTAACTTTGCTCTTGCTATTGTATACAACGTCGTAGCAATGATTTTAACCCTGATATGATGTATCAAGCCTGCAAATATATGTCTCCAACCGGTTTTTAATCTGTCTAGGCCACAGATGACATGGCG

mRNA sequence

TGGGAAGACAGGTGGCAAAGTACTAATGGTTGAAATAATATTTCCTCCCTCATCTTTTCAACGAAAATCCAAAATCCAAAAATGATTCTGATCATGAAAAACACAAAGCTACTAGTTCAAAGGGACTCCCTCCTTTTCACTACTTGCAAAATTTATTTCTTGTAAGAAGAAAAAACAGAGAGAGAGAGGGAGAAAATTAATAATGGCTAGCATTGCATCATCAGTAGCTGTTAGGCTTGGGCTAACACAAGTGTTGCCCAACAAAAACTTCTCATCTCCAAGGAGCACTAGGCTTGTTGTCCGGGCTGCTGAAGAGGCTGCTGCTGCACCCGCTGCCGCATCGCCCGAAGGTGAAGCACCCAAAGCTGCTGCTAAGCCACCACCAATTGGCCCCAAGAGGGGTTCTAAGGTGAGAATCATGAGAAAGGAATCATACTGGTACAAGGGTGTTGGCTCAGTGGTTGCTGTTGATCAGGATCCAAAAACAAGATATCCAGTTGTGGTGAGATTCAACAAGGTGAATTACGCGAATGTATCAACCAACAACTACGCACTGGATGAGATTCAAGAAGTTGCATGATCAACTCTGTTATAAGTTTGCGAAATTTCCAAACATTTAGATGAATTAGGAGCTATTTCTGCTGTGTGTATCCAATGTAAATCTACTTCTTTTGAGTATCAACTTCTTTGCCCATGAAACTTGTCAGATATGCTCCTCATCATCCTAAGTATTCACCATATTCTTTCCTTATTTATAGAATACTTGACCCATCAGTAACCGTGCTTCTTCTGTTTGGTCGTTACGTAACAGAAGTTTACTTAGCAGAGTAAATAGCAGTACTGAAATACTAACAAGATTATGCAACCCAGGAAATGAGAAACAATTCTGACAAACCTAGTAGTATGTCACAAACTTACAATTCACACTAACTTGTGATTCTAACTTCCTTCTGCAACTCCTAAATTTCACTCTTTCGGACTAATTTAACAATGTACAATACACTGATATAGTCATGATACTGCCATCTCAAGTATGGGAAAAATCACCCATTCTCGAAGGTTTTTCTTTCCGAAACCTCGAAATACCCTTTGTATTTTAAAGTAACTCTAAGAAATATCCACAGCAAGTAATACAAAGTAAGTAATATACTGGTAGAGATTTTTTAGGTACAACTCCAACGACTTTCAGCACAAAAATTGGTGCATTCTTCAAGCAATTGCAGAGAGAGGCAGAAGTTCATGGCACTTGCTTTTCGTTGACACAGAAATCAAATCAGCCAACATGCAATGTGCACAAGAATCAAGCTCACTAACGGTCTCACCTCTCAAACTAGTGTCGGTTGATATTCCCTAGTGACTCCATTACTCCAAGCCTTCATTAACCTTTTAATCTGTAACCTGAACATAGCTGGTTTCTCGGTTATAAGCATGATGTTGTCTGTGTTGCCCAATGTTCAAAATTTATACTATTGTAATCAATTTCGTTCATATTAAAACTAAAAGGGCTTCAGAACAGGAAACCTGAAGAAATACCTCCCTCAGTTCTGTAACTTTGCTCTTGCTATTGTATACAACGTCGTAGCAATGATTTTAACCCTGATATGATGTATCAAGCCTGCAAATATATGTCTCCAACCGGTTTTTAATCTGTCTAGGCCACAGATGACATGGCG

Coding sequence (CDS)

ATGGCTAGCATTGCATCATCAGTAGCTGTTAGGCTTGGGCTAACACAAGTGTTGCCCAACAAAAACTTCTCATCTCCAAGGAGCACTAGGCTTGTTGTCCGGGCTGCTGAAGAGGCTGCTGCTGCACCCGCTGCCGCATCGCCCGAAGGTGAAGCACCCAAAGCTGCTGCTAAGCCACCACCAATTGGCCCCAAGAGGGGTTCTAAGGTGAGAATCATGAGAAAGGAATCATACTGGTACAAGGGTGTTGGCTCAGTGGTTGCTGTTGATCAGGATCCAAAAACAAGATATCCAGTTGTGGTGAGATTCAACAAGGTGAATTACGCGAATGTATCAACCAACAACTACGCACTGGATGAGATTCAAGAAGTTGCATGA

Protein sequence

MASIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEAPKAAAKPPPIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEVA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo16925.1Spo16925.1mRNA


Homology
[Close]
BLAST of Spo16925.1 vs. NCBI nr
Match: gi|131178|sp|P12354.1|PSAE_SPIOL (RecName: Full=Photosystem I reaction center subunit IV, chloroplastic; Short=PSI-E; Flags: Precursor)

HSP 1 Score: 234.2 bits (596), Expect = 1.300e-58
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 

		  

Query: 1   MASIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEAPKAAAKPP 60
           MASIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEAPKAAAKPP
Sbjct: 1   MASIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEAPKAAAKPP 60

Query: 61  PIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDE 120
           PIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDE
Sbjct: 61  PIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDE 120

Query: 121 IQEVA 126
           IQEVA
Sbjct: 121 IQEVA 125
[Close]
BLAST of Spo16925.1 vs. NCBI nr
Match: gi|731347125|ref|XP_010684821.1| (PREDICTED: photosystem I reaction center subunit IV, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 210.3 bits (534), Expect = 1.900e-51
Identity = 112/123 (91.06%), Postives = 118/123 (95.93%), Query Frame = 1 

		  

Query: 3   SIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEAPKAAAKPPPI 62
           S+ASSVA RLGLT VLPN+NF SPRSTRLVVRAAE+AAAAPAAA+P GEAP AAAKPPP+
Sbjct: 5   SMASSVAARLGLTPVLPNRNF-SPRSTRLVVRAAEDAAAAPAAAAPAGEAPAAAAKPPPV 64

Query: 63  GPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQ 122
           GPKRGSKVRI+RKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQ
Sbjct: 65  GPKRGSKVRILRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQ 124

Query: 123 EVA 126
           EVA
Sbjct: 125 EVA 126
[Close]
BLAST of Spo16925.1 vs. NCBI nr
Match: gi|700584446|ref|NP_001289527.1| (photosystem I reaction center subunit IV B, chloroplastic [Nicotiana sylvestris])

HSP 1 Score: 159.5 bits (402), Expect = 3.900e-36
Identity = 87/120 (72.50%), Postives = 98/120 (81.67%), Query Frame = 1 

		  

Query: 6   SSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEAPKA-AAKPPPIGP 65
           S+ A R  +     +KN ++    RLVVRAAEEAA   A A+ EGEAP A AAKPPPIGP
Sbjct: 23  SNTAPRTSMLFFSSSKNNTTTNFPRLVVRAAEEAAPPAATATAEGEAPPAKAAKPPPIGP 82

Query: 66  KRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEV 125
           KRG+KVR++RKESYWYKGVGSVVAVDQDP TRYPVVVRFNKVNYANVSTNNYALDE++EV
Sbjct: 83  KRGTKVRVLRKESYWYKGVGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEVEEV 142
[Close]
BLAST of Spo16925.1 vs. NCBI nr
Match: gi|747072359|ref|XP_011083089.1| (PREDICTED: photosystem I reaction center subunit IV A, chloroplastic [Sesamum indicum])

HSP 1 Score: 157.9 bits (398), Expect = 1.100e-35
Identity = 89/110 (80.91%), Postives = 94/110 (85.45%), Query Frame = 1 

		  

Query: 19  PNKNFSSPRSTRLVVRAAEEAAAAPAAA---SPEGEAPKAAAKPPPIGPKRGSKVRIMRK 78
           P KN    R +RLVVRA EEAAAAPAAA   SP  EAPKA  KPPPIGP RGSKVRI+RK
Sbjct: 34  PTKN---NRCSRLVVRAEEEAAAAPAAAATDSPPAEAPKAP-KPPPIGPPRGSKVRILRK 93

Query: 79  ESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEVA 126
           ESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDE++ +A
Sbjct: 94  ESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEVEVIA 139
[Close]
BLAST of Spo16925.1 vs. NCBI nr
Match: gi|661892668|emb|CDP03826.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 156.8 bits (395), Expect = 2.500e-35
Identity = 86/111 (77.48%), Postives = 95/111 (85.59%), Query Frame = 1 

		  

Query: 17  VLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEA--PKAAAKPPPIGPKRGSKVRIMR 76
           +LP+KN ++   TRLVVRA+EE A A AA +P   A  P  A KPPPIGPKRG+KVRI+R
Sbjct: 35  LLPSKN-NATSCTRLVVRASEETAPAAAATAPAEPAAPPPQAPKPPPIGPKRGTKVRILR 94

Query: 77  KESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEVA 126
           KESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQE+A
Sbjct: 95  KESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEIA 144
[Close]
BLAST of Spo16925.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHN1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_065780 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 8.700e-59
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 

		  

Query: 1   MASIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEAPKAAAKPP 60
           MASIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEAPKAAAKPP
Sbjct: 1   MASIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEAPKAAAKPP 60

Query: 61  PIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDE 120
           PIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDE
Sbjct: 61  PIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDE 120

Query: 121 IQEVA 126
           IQEVA
Sbjct: 121 IQEVA 125
[Close]
BLAST of Spo16925.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BW49_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g166490 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.300e-51
Identity = 112/123 (91.06%), Postives = 118/123 (95.93%), Query Frame = 1 

		  

Query: 3   SIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEAPKAAAKPPPI 62
           S+ASSVA RLGLT VLPN+NF SPRSTRLVVRAAE+AAAAPAAA+P GEAP AAAKPPP+
Sbjct: 5   SMASSVAARLGLTPVLPNRNF-SPRSTRLVVRAAEDAAAAPAAAAPAGEAPAAAAKPPPV 64

Query: 63  GPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQ 122
           GPKRGSKVRI+RKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQ
Sbjct: 65  GPKRGSKVRILRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQ 124

Query: 123 EVA 126
           EVA
Sbjct: 125 EVA 126
[Close]
BLAST of Spo16925.1 vs. UniProtKB/TrEMBL
Match: A0A068U5R5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016317001 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.800e-35
Identity = 86/111 (77.48%), Postives = 95/111 (85.59%), Query Frame = 1 

		  

Query: 17  VLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEA--PKAAAKPPPIGPKRGSKVRIMR 76
           +LP+KN ++   TRLVVRA+EE A A AA +P   A  P  A KPPPIGPKRG+KVRI+R
Sbjct: 35  LLPSKN-NATSCTRLVVRASEETAPAAAATAPAEPAAPPPQAPKPPPIGPKRGTKVRILR 94

Query: 77  KESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEVA 126
           KESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQE+A
Sbjct: 95  KESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEIA 144
[Close]
BLAST of Spo16925.1 vs. UniProtKB/TrEMBL
Match: A0A022PUR8_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015996mg PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.900e-35
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 1 

		  

Query: 19  PNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEAPKAAAKPPPIGPKRGSKVRIMRKESY 78
           PNK  SS R+ RLVVRAAEEAA APAA SP   APKA  KPP +GP RGSKVRI+RKESY
Sbjct: 35  PNK--SSSRNARLVVRAAEEAAPAPAADSPAAAAPKAP-KPPAVGPPRGSKVRILRKESY 94

Query: 79  WYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEVA 126
           WYKGVGSVVAVDQD KTRYPVVVRFNKVNYANVSTNNYALDE++ VA
Sbjct: 95  WYKGVGSVVAVDQDNKTRYPVVVRFNKVNYANVSTNNYALDEVELVA 138
[Close]
BLAST of Spo16925.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HM94_SOLCH (Putative photosystem I reaction center subunit IV B, chloroplastic-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.200e-35
Identity = 90/111 (81.08%), Postives = 97/111 (87.39%), Query Frame = 1 

		  

Query: 22  NFSSPRST----RLVVRAAEEAA-AAPAAASP--EGEAPKA-AAKPPPIGPKRGSKVRIM 81
           +FSS  +T    RLVVRAAEEAA AAP AA+   EGEAP A AAKPPPIGPKRG+KVRI+
Sbjct: 32  SFSSKNNTTNIPRLVVRAAEEAAEAAPPAATATVEGEAPPAKAAKPPPIGPKRGAKVRIL 91

Query: 82  RKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEV 125
           RKESYWYKG GSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDE++EV
Sbjct: 92  RKESYWYKGTGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEVEEV 142
[Close]
BLAST of Spo16925.1 vs. ExPASy Swiss-Prot
Match: PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 7.800e-61
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 

		  

Query: 1   MASIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEAPKAAAKPP 60
           MASIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEAPKAAAKPP
Sbjct: 1   MASIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEAPKAAAKPP 60

Query: 61  PIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDE 120
           PIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDE
Sbjct: 61  PIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDE 120

Query: 121 IQEVA 126
           IQEVA
Sbjct: 121 IQEVA 125
[Close]
BLAST of Spo16925.1 vs. ExPASy Swiss-Prot
Match: PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.500e-38
Identity = 87/120 (72.50%), Postives = 98/120 (81.67%), Query Frame = 1 

		  

Query: 6   SSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEGEAPKA-AAKPPPIGP 65
           S+ A R  +     +KN ++    RLVVRAAEEAA   A A+ EGEAP A AAKPPPIGP
Sbjct: 23  SNTAPRTSMLFFSSSKNNTTTNFPRLVVRAAEEAAPPAATATAEGEAPPAKAAKPPPIGP 82

Query: 66  KRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEV 125
           KRG+KVR++RKESYWYKGVGSVVAVDQDP TRYPVVVRFNKVNYANVSTNNYALDE++EV
Sbjct: 83  KRGTKVRVLRKESYWYKGVGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEVEEV 142
[Close]
BLAST of Spo16925.1 vs. ExPASy Swiss-Prot
Match: PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.900e-36
Identity = 84/106 (79.25%), Postives = 91/106 (85.85%), Query Frame = 1 

		  

Query: 20  NKNFSSPRSTRLVVRAAEEAAAAPAAASPE-GEAPKAAAKPPPIGPKRGSKVRIMRKESY 79
           +KN+ S  + RLVVRAAEEAA   AAA+ E  EAP  AAKPPPIGPKRG+KVRI+RKESY
Sbjct: 36  SKNYGST-APRLVVRAAEEAAPPAAAATAEPAEAPVKAAKPPPIGPKRGTKVRILRKESY 95

Query: 80  WYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEV 125
           WYKG GSVVA DQDP TRYPVVVRFNKVNYANVSTNNYALDEI+EV
Sbjct: 96  WYKGTGSVVACDQDPNTRYPVVVRFNKVNYANVSTNNYALDEIEEV 140
[Close]
BLAST of Spo16925.1 vs. ExPASy Swiss-Prot
Match: PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.300e-33
Identity = 81/131 (61.83%), Postives = 94/131 (71.76%), Query Frame = 1 

		  

Query: 2   ASIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPA--------AASPEGEAP 61
           A+I    +    +   LP ++F S    RLVVRAAE+   A A        AA+   + P
Sbjct: 18  AAIGGGSSKSTTIVSFLPMRSFGS----RLVVRAAEDTPPATASSDSSSTTAAAAPAKVP 77

Query: 62  KAAAKPPPIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVST 121
            A AKPPPIGPKRGSKV+I+RKESYWYK VGSVVAVDQDPKTRYPVVVRF KVNYAN+ST
Sbjct: 78  AAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYANIST 137

Query: 122 NNYALDEIQEV 125
           NNYALDE++EV
Sbjct: 138 NNYALDEVEEV 144
[Close]
BLAST of Spo16925.1 vs. ExPASy Swiss-Prot
Match: PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.300e-31
Identity = 81/132 (61.36%), Postives = 97/132 (73.48%), Query Frame = 1 

		  

Query: 1   MASIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAA-------PAAASPEGEAP 60
           + S+A + + R  ++  LP +N  S    RLVVRAAE+ A A       PAAA+    A 
Sbjct: 16  VTSVAGASSSRSSVS-FLPMRNAGS----RLVVRAAEDPAPASSSSKDSPAAAAAPDGAT 75

Query: 61  KAAAKPPPIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVST 120
               KPPPIGPKRGSKV+I+R+ESYW+K VGSVVAVDQDPKTRYPVVVRF KVNYAN+ST
Sbjct: 76  ATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANIST 135

Query: 121 NNYALDEIQEVA 126
           NNYALDE++EVA
Sbjct: 136 NNYALDEVEEVA 142
[Close]
BLAST of Spo16925.1 vs. TAIR (Arabidopsis)
Match: AT2G20260.1 (photosystem I subunit E-2)

HSP 1 Score: 141.7 bits (356), Expect = 3.000e-34
Identity = 81/131 (61.83%), Postives = 94/131 (71.76%), Query Frame = 1 

		  

Query: 2   ASIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPA--------AASPEGEAP 61
           A+I    +    +   LP ++F S    RLVVRAAE+   A A        AA+   + P
Sbjct: 18  AAIGGGSSKSTTIVSFLPMRSFGS----RLVVRAAEDTPPATASSDSSSTTAAAAPAKVP 77

Query: 62  KAAAKPPPIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVST 121
            A AKPPPIGPKRGSKV+I+RKESYWYK VGSVVAVDQDPKTRYPVVVRF KVNYAN+ST
Sbjct: 78  AAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYANIST 137

Query: 122 NNYALDEIQEV 125
           NNYALDE++EV
Sbjct: 138 NNYALDEVEEV 144
[Close]
BLAST of Spo16925.1 vs. TAIR (Arabidopsis)
Match: AT4G28750.1 (Photosystem I reaction centre subunit IV / PsaE protein)

HSP 1 Score: 137.1 bits (344), Expect = 7.300e-33
Identity = 81/132 (61.36%), Postives = 97/132 (73.48%), Query Frame = 1 

		  

Query: 1   MASIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAA-------PAAASPEGEAP 60
           + S+A + + R  ++  LP +N  S    RLVVRAAE+ A A       PAAA+    A 
Sbjct: 16  VTSVAGASSSRSSVS-FLPMRNAGS----RLVVRAAEDPAPASSSSKDSPAAAAAPDGAT 75

Query: 61  KAAAKPPPIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVST 120
               KPPPIGPKRGSKV+I+R+ESYW+K VGSVVAVDQDPKTRYPVVVRF KVNYAN+ST
Sbjct: 76  ATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANIST 135

Query: 121 NNYALDEIQEVA 126
           NNYALDE++EVA
Sbjct: 136 NNYALDEVEEVA 142
The following BLAST results are available for this feature:
BLAST of Spo16925.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|131178|sp|P12354.1|PSAE_SPIOL1.3e-58100.RecName: Full=Photosystem I re... [more]
gi|731347125|ref|XP_010684821.1|1.9e-5191.0PREDICTED: photosystem I react... [more]
gi|700584446|ref|NP_001289527.1|3.9e-3672.5photosystem I reaction center ... [more]
gi|747072359|ref|XP_011083089.1|1.1e-3580.9PREDICTED: photosystem I react... [more]
gi|661892668|emb|CDP03826.1|2.5e-3577.4unnamed protein product [Coffe... [more]
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BLAST of Spo16925.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RHN1_SPIOL8.7e-59100.Uncharacterized protein OS=Spi... [more]
A0A0J8BW49_BETVU1.3e-5191.0Uncharacterized protein OS=Bet... [more]
A0A068U5R5_COFCA1.8e-3577.4Uncharacterized protein OS=Cof... [more]
A0A022PUR8_ERYGU3.9e-3581.3Uncharacterized protein OS=Ery... [more]
A0A0V0HM94_SOLCH5.2e-3581.0Putative photosystem I reactio... [more]
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BLAST of Spo16925.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSAE_SPIOL7.8e-61100.Photosystem I reaction center ... [more]
PSAEB_NICSY2.5e-3872.5Photosystem I reaction center ... [more]
PSAEA_NICSY3.9e-3679.2Photosystem I reaction center ... [more]
PSAE2_ARATH5.3e-3361.8Photosystem I reaction center ... [more]
PSAE1_ARATH1.3e-3161.3Photosystem I reaction center ... [more]
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BLAST of Spo16925.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT2G20260.13.0e-3461.8photosystem I subunit E-2[more]
AT4G28750.17.3e-3361.3Photosystem I reaction centre ... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003375Photosystem I PsaE, reaction centre subunit IVPRODOMPD004772coord: 71..125
score: 5.0
IPR003375Photosystem I PsaE, reaction centre subunit IVPFAMPF02427PSI_PsaEcoord: 65..124
score: 1.3
IPR008990Electron transport accessory protein-like domainunknownSSF50090Electron transport accessory proteinscoord: 64..124
score: 1.06
NoneNo IPR availableGENE3D2.30.30.50coord: 64..124
score: 9.7
NoneNo IPR availablePANTHERPTHR34549FAMILY NOT NAMEDcoord: 30..125
score: 1.0
NoneNo IPR availablePANTHERPTHR34549:SF2PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC-RELATEDcoord: 30..125
score: 1.0

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0006364 rRNA processing
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0009657 plastid organization
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0009768 photosynthesis, light harvesting in photosystem I
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0042550 photosystem I stabilization
biological_process GO:0030003 cellular cation homeostasis
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0050821 protein stabilization
biological_process GO:0070838 divalent metal ion transport
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0009780 photosynthetic NADP+ reduction
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009538 photosystem I reaction center
cellular_component GO:0010287 plastoglobule
cellular_component GO:0030093 chloroplast photosystem I
cellular_component GO:0009523 photosystem II
cellular_component GO:0009522 photosystem I
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0005515 protein binding
molecular_function GO:0005198 structural molecule activity
RNA-Seq Expression