Spo17010 (gene)

Overview
NameSpo17010
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPhotosystem II CP43 reaction center protein (PSII 43 kDa protein) (Protein CP-43)
LocationSpoScf_02857 : 5726 .. 9493 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGAGTTGTATGCTGCGTTCGGGGAGGATGAATCGCTCCCAAAAAGGAATCTTGGTATATCCAGATAATAGGTAGGAGCATAAACTGAAACATTCTGGAGCTACAAGGATAGTAATTTGAAGTGGCTCATTTCGTACCAGAGAAGCCTATGTATGAACAATGATTAATTTTACTTCCCCACCTAGCTACTATAGGATGGGGGGTAGGCCCTGGCGGGGAAGTTATAGACACTTTTCCATACTTTGTATCGGGAGTACTTCACTTAATTTCGTCGGCCGTATTGGGCTTTGGTGGTATTTATCATGCACTTTTGGGCCCTNTCTTTAATGGAACTTTAACTTTAGCCGGCCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCTCGACTTATCAATTTATCTGGTAAACTACTTGGAGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACTTATTTGAAGTGGCTCATTTCGTACCAGAGAAGCCTATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGGGTAGGCCCTGGCGGGGAAGTTATAGACACTTTTCCATACTTTGTATCGGGAGTACTTCACTTAATTTCGTTAGCCCGCTTGTTGAAGGTGAAGTTTAGAAATAGAACAATTCCTTCTGTTGTGTATCCCCGATTGATGCAACCTCAGATACTATGCTCAGTTATAGATTTTAGTATTGAACGAAAGGTTACACCTTTGTGTTTTGTATTACAGGTCAATTCTACTTCCTAGTAATGTAATATAGTACCAATAGGCGGCATAGGGGAAAAAGCACTACACNCCTTTCCATCTTCGGTTATGTGTGGATAGATAGAAATAAAATGACCACAATTTTGGGCATTCACTTAATCTTGTTAGGTATAGGCGCTTTTCTTCTAGTATTCAAGGCTCTTTATTTTGGGGGCGTATATGATACCTGGGCTCCCGGAGGTGGAGATGTAAGAAAAATTACCAACGTCACCCTTAGTCCAAGTATTATATTTGGTTATTTACTAAAATCGCCTTTTGGCGTGCACGAGACCTAATCTAGTTCATGTATAAATTGATCATTTGTAAATCTTGTTATGTAGGTGTTACCATATTGCTTAATAATATAGTAAAATACTCAAATGAACCTGGTCCACGTTAATTTTATCGTGGACCAAGGGCATAAACGTTAAATCACAGGGTATGGCACGTGTGAAGTTTTTCATACATCCCGTTTTCTACCTTCCTCCACTCATCCCCTGTTCCCCATTCCCCGGTTTTCTGAAATTTGTTTCTCTCTCTTAAAATGCTTATTTCCCCTCCCCTCTCAAGTGCTTAGACACAATCTCTCCAGATTGTCTCTCCTCAAGTTCGTTTAAATTTGCTTATTTTTCTTCTTTGATCCTTTATTTTTCGTTGTTCTTTTGCAATGGTGAACATAAAAGGTGGTGCGACTGCGACATGCTGAAAGAGAAGTCACCGAAGTTGATTGCTAGTAAATTTTGTGTATTTTTTCCTTTTATTGACTTTAGGTTACAATGTTCATATTTCAGAGATGAATTTGTTATTCATTTTGTAATTTAGATGGCCGGAGATTTCTCACTTTAGATGTCGCATTCATTCAGAAAAATTATTGGCGTTCGATTTTTGTAGTTTGTGCTTTATTTATTTACTAATCTTTATGTGATTTCTATCGTTGAAGTTTTTTTTCATGGTTGAATTTCAATTTCTCACGTTTTAACTTGATTCTACCAGTTTAGGTTTTAAAACTAGGATTTACTAATTTGATCTTTTTTTTACTATAGTAATGGGTGCTTAACTTAATAATTTGGTATTGTAGCATATGTGATTTCAATTTATTTTTTAAGAATTAGATGTCTCAATTTGTTATGGACTACAGTTGTGTGATTGTAACTGAATATTGGTTTTGTCTCTCTTTTCAGACATAGTGATTGTTTTTAGTCAAAATGGTCATTGTAGGAAGTTTAGAGATACTTTGATTAAAAAGGGTGTTTATTTAAGTTGTTTGAGGGTTAATATGTGAATAAGAGGATCGCTATATACGAAGTATGTAAAAAAGGTCAACTTAGGGAGAATAGGTTACTTCGATTCAAAATGGAAGTTTATCTTGTTTAAGGGTCACTATCACTACAAGAAATGGAATAATTTCAGACCGCCAAAAGTGGTCGGTAAAACACGAAATACGGTTGGTAAAATGTTTAGCGACCGCCAACGGTCGTAAAAAAGGCGGTTAGTGTTCACCTGGACGGTAATTAAGGAAACTCCGACTGTAAAGCGGTCGCTAAATTTTACCGTCTGCAATAGCGACTGCATGATAGTCGTTAATTTAGCGACTGACAAGCGGTCGCTAAATTAGCGACTGCCAAAGCGGTCGCTAAATTAGCAACTACCATAGGCGGTTGCTAATTTACCGACTGCCTGAGCGGTCGCTAAATTTGTGACTGCCAAAGCGGTCTCTAAATTAGCAACCGCCTAAGGTAGTCGAGATCTTACTAGTTTAGTCGCTATTTAAGTATTATAATTTCTGCTGGGATTTATTTTTGCGGTCACTAATCTACCTGTAGTGGTTGGTAAATTTGTATGCAAATATCATTTCGTGATCGTGATATATTATCGTATATATACGAATTTATATAAATCCTGTAAAATTGTATGAAACCTGCTCAAAGTTATATTAAACCTGTTCAAATGAATGGAGGACCTCACTCTCTCGAGGCGTCTTAATCGCTGGAATTACAGACCACGTTTTCTGTCTGGGACTGACGCCCTCCCTCGCCTTCTTTCAAGGGAATGGAGGCTTGTAAAGCCTTTATTCCAGGCAGAAATGTATAGGCTGTCTGCCAAGAGCCATGCTTGGGTTCCCAACAGTTGGCTTCCCCATGTGTGGCAGTTTACCAATAGGGTCTTTCTCGCGACCGTTGGTCTTTGTCCATATTTACATATAGGTAGTCTTCCCTTTTTGTGTGAATAGTGTAGATAATGTTTTTCTGTTCTTCGCTGATCTCTTTGGCTTGTGCAGAATCTGCTATGGCTCGTCTGTCCCCATAAGACAAAGGGTTGGGGAAGATACCTGATTGGTTGTCCCAGGTGTATGGACAATGTTCTCAAAGCCGTAGAGGCTAAGAGGAAGGAATCCTGTAAGAAATATGATGAGGCGGCCTGCGGTGACCTCCCTAAGGTACTTTCTATTTGTTTGACCACGTTCTGAAGTCTTTTGGGTTTATACTGACTTTGGTTTCTTCCTCTCTAGGGGCCCACTGCGTCGTTTACAGAGAAGCGTCCTGCTCCCTTGTCGACTGCCCCTAAAGCAAAGCGTCCCTTCTTTAAGATGAAGAGCAGCGCGGATGTTGTGGTGACGCCTGGGCCAGAGCCGTCGGCTACACCTGCTGGGGGTGTGGGGGTTTCTTCCCCACGAGTGGAGGATCTTTCTGCGGCTACTGTAGCCAAGGAGGCGTCTCCCCAGGTGGCAGATGAAGTTTGTCCTGTGGCCAAGGAGGCTTCTGCCGAGGCGGTTGTGGGTGTTGACCGTGCTGCTGACCCATTGCCTAGGGAGAAGGTGAGCAGGGAGTCAAGAGACGCTTCTCAGGCTGGGGACACGTCGATGCCCCCACCTGCTTCGCCAGCGGGCAAGCTTCGTAATAATTGGGACGACTTGCTAGCTTTGTAG

mRNA sequence

ATGGAAGAAGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGAGTTGTATGCTGCGTTCGGGGAGGATGAATCGCTCCCAAAAAGGAATCTTGGATGGGGGGTAGGCCCTGGCGGGGAAGTTATAGACACTTTTCCATACTTTGTATCGGGAGTACTTCACTTAATTTCGTCGGCCGTATTGGGCTTTGGTGGTATTTATCATGCACTTTTGGGCCCTNTCTTTAATGGAACTTTAACTTTAGCCGGCCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCTCGACTTATCAATTTATCTGGTAAACTACTTGGAGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACTTATTTGAAGTGGCTCATTTCGTACCAGAGAAGCCTATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGGGTAGGCCCTGGCGGGGAAGTTATAGACACTTTTCCATACTTTGTATCGGGAGTACTTCACTTAATTTCGTTAGCCCGCTTGTTGAAGAATCTGCTATGGCTCGTCTGTCCCCATAAGACAAAGGGTTGGGGAAGATACCTGATTGGTTGTCCCAGGTGTATGGACAATGTTCTCAAAGCCGTAGAGGCTAAGAGGAAGGAATCCTGTAAGAAATATGATGAGGCGGCCTGCGGTGACCTCCCTAAGGGGCCCACTGCGTCGTTTACAGAGAAGCGTCCTGCTCCCTTGTCGACTGCCCCTAAAGCAAAGCGTCCCTTCTTTAAGATGAAGAGCAGCGCGGATGTTGTGGTGACGCCTGGGCCAGAGCCGTCGGCTACACCTGCTGGGGGTGTGGGGGTTTCTTCCCCACGAGTGGAGGATCTTTCTGCGGCTACTGTAGCCAAGGAGGCGTCTCCCCAGGTGGCAGATGAAGTTTGTCCTGTGGCCAAGGAGGCTTCTGCCGAGGCGGTTGTGGGTGTTGACCGTGCTGCTGACCCATTGCCTAGGGAGAAGGTGAGCAGGGAGTCAAGAGACGCTTCTCAGGCTGGGGACACGTCGATGCCCCCACCTGCTTCGCCAGCGGGCAAGCTTCGTAATAATTGGGACGACTTGCTAGCTTTGTAG

Coding sequence (CDS)

ATGGAAGAAGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGAGTTGTATGCTGCGTTCGGGGAGGATGAATCGCTCCCAAAAAGGAATCTTGGATGGGGGGTAGGCCCTGGCGGGGAAGTTATAGACACTTTTCCATACTTTGTATCGGGAGTACTTCACTTAATTTCGTCGGCCGTATTGGGCTTTGGTGGTATTTATCATGCACTTTTGGGCCCTNTCTTTAATGGAACTTTAACTTTAGCCGGCCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCTCGACTTATCAATTTATCTGGTAAACTACTTGGAGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACTTATTTGAAGTGGCTCATTTCGTACCAGAGAAGCCTATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGGGTAGGCCCTGGCGGGGAAGTTATAGACACTTTTCCATACTTTGTATCGGGAGTACTTCACTTAATTTCGTTAGCCCGCTTGTTGAAGAATCTGCTATGGCTCGTCTGTCCCCATAAGACAAAGGGTTGGGGAAGATACCTGATTGGTTGTCCCAGGTGTATGGACAATGTTCTCAAAGCCGTAGAGGCTAAGAGGAAGGAATCCTGTAAGAAATATGATGAGGCGGCCTGCGGTGACCTCCCTAAGGGGCCCACTGCGTCGTTTACAGAGAAGCGTCCTGCTCCCTTGTCGACTGCCCCTAAAGCAAAGCGTCCCTTCTTTAAGATGAAGAGCAGCGCGGATGTTGTGGTGACGCCTGGGCCAGAGCCGTCGGCTACACCTGCTGGGGGTGTGGGGGTTTCTTCCCCACGAGTGGAGGATCTTTCTGCGGCTACTGTAGCCAAGGAGGCGTCTCCCCAGGTGGCAGATGAAGTTTGTCCTGTGGCCAAGGAGGCTTCTGCCGAGGCGGTTGTGGGTGTTGACCGTGCTGCTGACCCATTGCCTAGGGAGAAGGTGAGCAGGGAGTCAAGAGACGCTTCTCAGGCTGGGGACACGTCGATGCCCCCACCTGCTTCGCCAGCGGGCAAGCTTCGTAATAATTGGGACGACTTGCTAGCTTTGTAG

Protein sequence

MEEGGNKHTWRAQYNGELYAAFGEDESLPKRNLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPXFNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARLLKNLLWLVCPHKTKGWGRYLIGCPRCMDNVLKAVEAKRKESCKKYDEAACGDLPKGPTASFTEKRPAPLSTAPKAKRPFFKMKSSADVVVTPGPEPSATPAGGVGVSSPRVEDLSAATVAKEASPQVADEVCPVAKEASAEAVVGVDRAADPLPREKVSRESRDASQAGDTSMPPPASPAGKLRNNWDDLLAL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo17010.1Spo17010.1mRNA


Homology
[Close]
BLAST of Spo17010.1 vs. NCBI nr
Match: gi|11497521|ref|NP_054929.1| (photosystem II 44 kDa protein [Spinacia oleracea])

HSP 1 Score: 223.4 bits (568), Expect = 6.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. NCBI nr
Match: gi|817528716|ref|YP_009136597.1| (photosystem II CP43 protein (plastid) [Viola seoulensis])

HSP 1 Score: 223.4 bits (568), Expect = 6.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. NCBI nr
Match: gi|33328112|gb|AAQ09501.1| (photosystem II cp43 protein, partial (chloroplast) [Spinacia oleracea])

HSP 1 Score: 223.4 bits (568), Expect = 6.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. NCBI nr
Match: gi|1020267080|gb|AMZ03431.1| (photosystem II CP43 protein (chloroplast) [Bienertia sinuspersici])

HSP 1 Score: 223.4 bits (568), Expect = 6.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. NCBI nr
Match: gi|372000485|gb|AEX65319.1| (photosystem II protein CP43, partial (chloroplast) [Mollugo verticillata])

HSP 1 Score: 223.4 bits (568), Expect = 6.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 30  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 89

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 90  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 138
[Close]
BLAST of Spo17010.1 vs. UniProtKB/TrEMBL
Match: H2FAK5_ASPOF (Photosystem II CP43 reaction center protein OS=Asparagus officinalis GN=psbC PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. UniProtKB/TrEMBL
Match: H2BBT1_MOLVE (Photosystem II CP43 reaction center protein (Fragment) OS=Mollugo verticillata GN=psbC PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 30  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 89

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 90  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 138
[Close]
BLAST of Spo17010.1 vs. UniProtKB/TrEMBL
Match: H6T036_ASPOF (Photosystem II CP43 reaction center protein (Fragment) OS=Asparagus officinalis GN=psbC PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 30  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 89

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 90  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 138
[Close]
BLAST of Spo17010.1 vs. UniProtKB/TrEMBL
Match: A0A159ZR97_9CARY (Photosystem II CP43 protein OS=Bienertia sinuspersici GN=psbC PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. UniProtKB/TrEMBL
Match: K4KK62_VIOPU (Photosystem II CP43 reaction center protein (Fragment) OS=Viola pubescens GN=psbC PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.700e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. ExPASy Swiss-Prot
Match: PSBC_SPIOL (Photosystem II CP43 reaction center protein OS=Spinacia oleracea GN=psbC PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.200e-57
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. ExPASy Swiss-Prot
Match: PSBC_CRYJA (Photosystem II CP43 reaction center protein OS=Cryptomeria japonica GN=psbC PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 7.100e-57
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGE++DTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEIVDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. ExPASy Swiss-Prot
Match: PSBC_WELMI (Photosystem II CP43 reaction center protein OS=Welwitschia mirabilis GN=psbC PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.200e-56
Identity = 103/109 (94.50%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF+
Sbjct: 17  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFI 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGE++DTFPYFVSG+LHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEIVDTFPYFVSGILHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. ExPASy Swiss-Prot
Match: PSBC_MANES (Photosystem II CP43 reaction center protein OS=Manihot esculenta GN=psbC PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.200e-56
Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTL+LAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLSLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
[Close]
BLAST of Spo17010.1 vs. ExPASy Swiss-Prot
Match: PSBC_CERDE (Photosystem II CP43 reaction center protein OS=Ceratophyllum demersum GN=psbC PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.200e-56
Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTL+LAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 5   FNGTLSLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 64

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 65  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 113
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BLAST of Spo17010.1 vs. TAIR (Arabidopsis)
Match: ATCG00280.1 (photosystem II reaction center protein C)

HSP 1 Score: 221.5 bits (563), Expect = 9.000e-58
Identity = 106/109 (97.25%), Postives = 106/109 (97.25%), Query Frame = 1 

		  

Query: 77  FNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 136
           FNGTL LAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV
Sbjct: 17  FNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFV 76

Query: 137 PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISLARL 186
           PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLIS A L
Sbjct: 77  PEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVL 125
The following BLAST results are available for this feature:
BLAST of Spo17010.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|11497521|ref|NP_054929.1|6.7e-5598.1photosystem II 44 kDa protein ... [more]
gi|817528716|ref|YP_009136597.1|6.7e-5598.1photosystem II CP43 protein (p... [more]
gi|33328112|gb|AAQ09501.1|6.7e-5598.1photosystem II cp43 protein, p... [more]
gi|1020267080|gb|AMZ03431.1|6.7e-5598.1photosystem II CP43 protein (c... [more]
gi|372000485|gb|AEX65319.1|6.7e-5598.1photosystem II protein CP43, p... [more]
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BLAST of Spo17010.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
H2FAK5_ASPOF4.7e-5598.1Photosystem II CP43 reaction c... [more]
H2BBT1_MOLVE4.7e-5598.1Photosystem II CP43 reaction c... [more]
H6T036_ASPOF4.7e-5598.1Photosystem II CP43 reaction c... [more]
A0A159ZR97_9CARY4.7e-5598.1Photosystem II CP43 protein OS... [more]
K4KK62_VIOPU4.7e-5598.1Photosystem II CP43 reaction c... [more]
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BLAST of Spo17010.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBC_SPIOL4.2e-5798.1Photosystem II CP43 reaction c... [more]
PSBC_CRYJA7.1e-5796.3Photosystem II CP43 reaction c... [more]
PSBC_WELMI1.2e-5694.5Photosystem II CP43 reaction c... [more]
PSBC_MANES1.2e-5697.2Photosystem II CP43 reaction c... [more]
PSBC_CERDE1.2e-5697.2Photosystem II CP43 reaction c... [more]
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BLAST of Spo17010.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
ATCG00280.19.0e-5897.2photosystem II reaction center... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 91..185
score: 3.4E-37coord: 32..70
score: 1.
IPR000932Photosystem antenna protein-likeunknownSSF161077Photosystem II antenna protein-likecoord: 32..75
score: 5.62E-14coord: 88..185
score: 6.93
NoneNo IPR availablePANTHERPTHR33180FAMILY NOT NAMEDcoord: 91..185
score: 9.2
NoneNo IPR availablePANTHERPTHR33180:SF4PHOTOSYSTEM II CP43 CHLOROPHYLL APOPROTEINcoord: 91..185
score: 9.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0010638 positive regulation of organelle organization
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0031048 chromatin silencing by small RNA
biological_process GO:0006306 DNA methylation
biological_process GO:0009630 gravitropism
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0016572 histone phosphorylation
biological_process GO:0006346 methylation-dependent chromatin silencing
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0009910 negative regulation of flower development
biological_process GO:0009640 photomorphogenesis
biological_process GO:0008284 positive regulation of cell proliferation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0043687 post-translational protein modification
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0000338 protein deneddylation
biological_process GO:0016579 protein deubiquitination
biological_process GO:0016567 protein ubiquitination
biological_process GO:0007131 reciprocal meiotic recombination
biological_process GO:0033044 regulation of chromosome organization
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0009635 response to herbicide
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0015074 DNA integration
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006554 lysine catabolic process
biological_process GO:0015979 photosynthesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0034968 histone lysine methylation
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009769 photosynthesis, light harvesting in photosystem II
biological_process GO:0006354 DNA-templated transcription, elongation
cellular_component GO:0010287 plastoglobule
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009523 photosystem II
cellular_component GO:0009522 photosystem I
cellular_component GO:0031361 integral component of thylakoid membrane
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0016020 membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0030076 light-harvesting complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0009521 photosystem
cellular_component GO:0005886 plasma membrane
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0010242 oxygen evolving activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0020037 heme binding
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0048038 quinone binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0045157 electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo247080.94Barchart | Table
Spo106270.94Barchart | Table
Spo062000.93Barchart | Table
Spo062010.91Barchart | Table
Spo247170.91Barchart | Table
Spo042780.90Barchart | Table
Spo247070.89Barchart | Table
Spo224450.89Barchart | Table
Spo119040.88Barchart | Table
Spo028510.88Barchart | Table
Spo042770.88Barchart | Table
Spo164840.87Barchart | Table
Spo164850.87Barchart | Table
Spo017480.86Barchart | Table
Spo255550.86Barchart | Table
Spo180440.86Barchart | Table
Spo164900.85Barchart | Table
Spo261260.83Barchart | Table
Spo006260.82Barchart | Table
Spo058750.81Barchart | Table
Spo084400.81Barchart | Table
Spo261270.80Barchart | Table
Spo255380.80Barchart | Table
Spo247180.79Barchart | Table
Spo161960.79Barchart | Table
Spo195600.78Barchart | Table
Spo250040.78Barchart | Table
Spo094130.78Barchart | Table
Spo225720.78Barchart | Table
Spo255370.77Barchart | Table
Spo247190.77Barchart | Table
Spo179230.75Barchart | Table
Spo219460.73Barchart | Table
Spo139590.73Barchart | Table
Spo190780.72Barchart | Table
Spo164860.72Barchart | Table
Spo139570.71Barchart | Table
Spo067570.71Barchart | Table
Spo195300.70Barchart | Table
Spo019720.69Barchart | Table
Spo179240.69Barchart | Table
Spo199750.69Barchart | Table
Spo211710.69Barchart | Table
Spo063830.69Barchart | Table
Spo214390.68Barchart | Table
Spo195610.68Barchart | Table
Spo073550.68Barchart | Table
Spo181790.68Barchart | Table
Spo168950.68Barchart | Table
Spo054120.68Barchart | Table
Spo176180.67Barchart | Table
Spo148160.67Barchart | Table
Spo193360.67Barchart | Table
Spo109470.66Barchart | Table
Spo096180.66Barchart | Table
Spo225730.66Barchart | Table
Spo179250.66Barchart | Table
Spo130530.66Barchart | Table