Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GAAATTACAACAATGGCGGAAAAGGCAGTAACAATCCGAACTCGCAAGTTCATGACCAATCGTCTTCTCTCAAGGAAGCAATTCGTTAGTTCTTCTCCCTCTTTTCTCGATTGATTTTTTTTCTCAAATTGTTATTCTATAACTTCTCAAACCCTAATTTATTTTTGTTGATTCGTTTGTTGCATTTCAGGTCATCGATGTTCTTCACCCTGGTGGCGCCAACGTATCAAAGGTATCATCTTCTTTTCTGCGATCCTTTACCGCATTGTATTTTATGCTTTAATTGATTATTTTATTTAAAAATAAATATTGTGATTCCTTGTGATTTACTGTAATTTTCTGAAATCATTAGTTGATGATTATACTTGGTTATCTGTTGAGGAAGCTTACTCATTGATTTTGTTGTTGAATGATGCTTCATTGATGATATTGTAATGTATTCTGGTGCTCGTCTTGTCATGTTGTAGTGTATGTATCGGTGCCAAGGCCAGAAACATGTATAAGTTTGTAAATTGTAAAGGGAGTTAATCTTGGTAATAATCCTCTGATATGATGGTAGCTTAATACATTATGCAAACATAATGCTTTTAGTTAAATTGTAAAGGGGGTTAATCTTGGTAATAATCCTCTGATATGATGGTAGCTTAATACATTATGCAAACATAATGCTTTTAGTTAGTCCCTTGCGCCAAACCTGACGCTATTAGTTACAGTATGGAGGGCAGTTATTGTCATCTTGTACATTGTACCCTAATTCATATCCTAATTACACTGCTACTAGTTTACTATTTGCATTGGAAACTAATTGATCATTTTGTGTTTAATACTGACCTTTCTATTAAAGGGTTTTATTTGTCATTTTTGCTTGTTGATTGTTGCATTGTCATATTGTAGTGTATGTATCGGTGCTAAGGCTAGAAACATGTACAAGTTTGTAAATTGTAAAGGGAGTTAATCTTGATAATAATCCTCTGATATGATGCTTAATACGTTATGCAAACATAATGTGTTTAGTTAGTCCCTTGCTCCAAACCTGATACTATTAGTTACCGTATGGAGTGCAGTTATTGTCATCTTTTGCATTGTATCCTAAATCATATCCTAATTACACTGCTACTTATTTACTCTTTACATTGGAAACTAATCACTAATTTTGTGATTAATACTCACCTTTCTATTAGGGGGTTTTATTTGTCATTTTTGCTTGTTGATTGTTGCATTTTCAATGATTTGCCCTCAGTCTGTGTCTTTGCATCTTCAAAGAACAATGTACTGCCAAATTTCTTTATGTTGTTATAATTAATAATGATTCTACTCTACATTTATGTATTCCAAGATTGTGGAGAAAGGTGGGGAGTTTTATTTTTGCTTTTATACCTTTAGTGTGCATAACTGCAAACATTGATGTCTTTTGTCTCTGTTTGTCAAATGTCTTACCACATTCTTTTCTTTTCTGAAAGGCTGAGTTGAAGGAAAAAATGGCTAGGATCTATGATGTGAATGATTTGAACTCCATCTTCGTGTTTAAGTTCCGTACTCACTTCGGAGGTGGTAAATCAACTGGATTTGGTTTGATTTATGATTCAGCTGATAGCGCCAAGAAGTTCGAGCCCAAGTACAAGCTGATCAGGGTAATTATCTTTACCCCTTTCTCTTGTACTCTATCCATTGATGTGGGTCGCAAATTTTCATGCTTCTCTCATTTAGTAATGCTTAATATACTCTTCTGATTGCCCCTCTTCCTCTTCTTTTTCTTTGGTGCAGAACGGATTGGCCACCAAGATCGAGAAGTCTAGGAAACAAATGAAGGAGCGAAAGAACAGAGCAAAGAAGATCTGTGGTGTGAAGAAGGTATGACATTCACCTATGTTGGCTTATTGTCTACTTTGTTTCATGTCACAATGAAACTGTCCTCCCATATAAATTTAAAACCTTTTTCTTCAATTCACACTTTGGCTCCGTTTGGTAGGGTGTAAAACGTTTTAATGTAAAATTATTTTCCCCTTTTTAATCATTTTACCTTGATTATTTTGACAAGAGATGAAAAACAATTTTCCATAACTCCCTCAATCCCTCAAAGGTGGAAAACCCTTTTCCATTTGAAAGGAAGGGAAATTACTTTTCCACCTTTCCTCCTTATCTCCCTCTCCCTTCTTCCTCTCAATTTTCACCATCTTCTCCAATTTTCTTCTTTTAAAGAAAACATTTTGCACTGAAAACGGTTTAACACCAAACCAAACAGACATTAGTGTAATTGATGTACCCAATGTTTTTAACCTTGTTATTCTTGTTCCTTTTTGCAAACTATAGCCGCAGAAGCTAAGAAGAAGTAAGGAATTAGTGATGTTGAGGTGCTTGACTGGTTGTGTACACCGGTGTGGCAGCTTTCTTTTTTTGGTGCATCTTCCTTGGCAATTGTCGACAATTTTCCTTTGCTGATATGTTGCTTGTGTACCCCCAATTACTGATAGTGGCATTAGTGAAAGATTACTAGACTTACAGCAGAGAGTCACGCGAATGTTCTTACTTTAAACTATGTCAAGAGTTCTATGAATTTTTTTTTTGGTAATGGATGAATTGTGATTAATTTGGCCTTTACTCTTATTTTGCTTTTTGATGTGTGCTTTTGTGTCATCGTCTTTGTTTTGGTGGCTATGTGTTGGAACTTCTGAAAAGTGAGGTGAAGCTATAGCTTAAACGGAGTAGTGTCTTGTTTAAAATGGTTAAATATATTATATCATACGAACCAGTGGGAAAAGTTCTCTATTTTTTTTATAAGGAAATAAAAATTATAGAACAAATTTTACAAGGATTAAATCAATAAAGCGTGGAAGGGTATTTATGACCGTTTTAGCCATAGAATTCGAATCCTGATTTGTCTACTGGAAAATATAGTAAAAAAGATCGTCCAAGGAACATTTTCCATTGCTGCTTAATAGGTTGATGACGCTAAGATTGGCGCCTTCAACTACAAGGTGTTTGATCCCGAGGAAGAGTATACATTTGATGCCTTTACGAAGTGTTAAAGCATCCGTTAATAGAATTACCGATTTAGAACCAATGAATTTGGTCCCGCTAGATCAAGGGTACCAAGATGGTTTCTAATAACGAAACTTAAAGCCATATTCACATTTGAAGGGAGGGGACATTAAAGTTTAATTTGAATTGACTAGGAGATGAAGGGGCTTACCAAAAGATTTTTTTTTTCGAGACACTTTTGTCTTTTAAATTAGCCTTTGAAGGAGGGATGACTAGCCTGGAATTATCCGGATTCACAATTTTTTGCGAATGACCAATCTTTGTATAGTTTTCTAATTAGTTCAGCCCCTTGACTAAGGGTGAAACTTTCATTTCTGAAAGTTAGTTCATTCCACCATACAAAGGATATTCTTGCAAGGGAATTTAGTCCCAATGTATATTTACACTGCTCTAGGTTTGCAACCAAGTCTAAATAAGGTACACCGGGTAATGGCTTTGGCCATTTCTCTTCTCTCTCCAAAAAGTAAAAGAGGTTCATAGTAAATGGGCAAGAGAACAATACATGTAAGGTATCTTCTCGATGATGGTTACAAAGAGTCCATTCAAAAGGGACAAAAACATGGATTATATTCAAACTTTCTTTAGAGGGAAGACGGTCGTTACAAATTTTTCAAAGAATTTTTTTTTTTTTGGAGGAAGGTCAAGATCCCAAATCCATCTATAACTTACTTTCGGAGGTGTAGAAGGTCCAAAATCTTGTGCTAACCAGGCTCCTGATTTTCTTTAAAAGTCAGTGCTTAGGGGTAAGACCCCAAACCCGTTTATCTTCTATGTCATTACTAGGAATGGGAATTGAAGTGTGGACTACAAAAAATGGTGAGGGATTATTTCTTTGAGTTTGGAAATATCTCATTGCTTTTCTAAGGTGATAAAATCTAAAACTTTAACTTGATCCGCATTAGAAGGAGGAGGAATTAGATTTGAGAGCGGAAAAGGGCAAGCCTATTGTCAAGCCAAAATGAATTTTTTGCTTCATTCCCCACTTGTTATCTAAGACCTTTTCAAATCAAAGGACGAATTTTTATTATTCGCCTACGATTTTCTAAAATCAAAACCTCCATAATATTTTGGTTTACAAATGCGATCCCAACCTATCAAGTTGAGAGTTTTACTAGGTGAATCTTTATCCCAAAAGAATTTTCTATAGGATCTATCAAGGGATTTATTTATTTGATTAGGACGAGTAAGACTTTGCATTTGAAAATTAGCCTTAGTAGCTAAGCTTGGTTGGATTAGCACCAATCACCTTGTTTGTGATAATGAATTAGTTTTCCAATTAAAAAGTTGAGAATCTATTTTTTGAGGGATGTCAACAAAGATCTTTTTGGTGACGATTTTGTTAGTGATTGTACATCCTAGATAGTTTCTTAACCGATTTGAATGATTCGTCTTGAGAATGAATGAATTTAAATTATAGGATTTGAATATCCGTAGTATTTTGGGTGTAGTGGAATGCTGACTTACGATAGTTAACCAGTTGACCACAGATTAAAAAATACTTATCAAGAATTTGTCTAATAAGAACGCAACTTTCTGGCAAATCCTTTGCAATATCATTGTGTCATCCGCAAACGTTACAAATGGGATTCTCATTCTAGAATTACCAGGAGAAACTCTAAGTAACTTGGAGCGATCAAAGCAACTTTCATTGAGTGATCGAGCTAACAATTCTGCATAA GAAATTACAACAATGGCGGAAAAGGCAGTAACAATCCGAACTCGCAAGTTCATGACCAATCGTCTTCTCTCAAGGAAGCAATTCGTCATCGATGTTCTTCACCCTGGTGGCGCCAACGTATCAAAGGCTGAGTTGAAGGAAAAAATGGCTAGGATCTATGATGTGAATGATTTGAACTCCATCTTCGTGTTTAAGTTCCGTACTCACTTCGGAGGTGGTAAATCAACTGGATTTGGTTTGATTTATGATTCAGCTGATAGCGCCAAGAAGTTCGAGCCCAAGTACAAGCTGATCAGGAACGGATTGGCCACCAAGATCGAGAAGTCTAGGAAACAAATGAAGGAGCGAAAGAACAGAGCAAAGAAGATCTGTGGTGTGAAGAAGAACGCAACTTTCTGGCAAATCCTTTGCAATATCATTGTGTCATCCGCAAACGTTACAAATGGGATTCTCATTCTAGAATTACCAGGAGAAACTCTAAGTAACTTGGAGCGATCAAAGCAACTTTCATTGAGTGATCGAGCTAACAATTCTGCATAA ATGGCGGAAAAGGCAGTAACAATCCGAACTCGCAAGTTCATGACCAATCGTCTTCTCTCAAGGAAGCAATTCGTCATCGATGTTCTTCACCCTGGTGGCGCCAACGTATCAAAGGCTGAGTTGAAGGAAAAAATGGCTAGGATCTATGATGTGAATGATTTGAACTCCATCTTCGTGTTTAAGTTCCGTACTCACTTCGGAGGTGGTAAATCAACTGGATTTGGTTTGATTTATGATTCAGCTGATAGCGCCAAGAAGTTCGAGCCCAAGTACAAGCTGATCAGGAACGGATTGGCCACCAAGATCGAGAAGTCTAGGAAACAAATGAAGGAGCGAAAGAACAGAGCAAAGAAGATCTGTGGTGTGAAGAAGAACGCAACTTTCTGGCAAATCCTTTGCAATATCATTGTGTCATCCGCAAACGTTACAAATGGGATTCTCATTCTAGAATTACCAGGAGAAACTCTAAGTAACTTGGAGCGATCAAAGCAACTTTCATTGAGTGATCGAGCTAACAATTCTGCATAA MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGGANVSKAELKEKMARIYDVNDLNSIFVFKFRTHFGGGKSTGFGLIYDSADSAKKFEPKYKLIRNGLATKIEKSRKQMKERKNRAKKICGVKKNATFWQILCNIIVSSANVTNGILILELPGETLSNLERSKQLSLSDRANNSA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo17016.1 vs. NCBI nr
Match: gi|902207100|gb|KNA15622.1| (hypothetical protein SOVF_096540 [Spinacia oleracea]) HSP 1 Score: 239.2 bits (609), Expect = 5.400e-60 Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 1
BLAST of Spo17016.1 vs. NCBI nr
Match: gi|902207101|gb|KNA15623.1| (hypothetical protein SOVF_096550 [Spinacia oleracea]) HSP 1 Score: 230.7 bits (587), Expect = 1.900e-57 Identity = 119/124 (95.97%), Postives = 121/124 (97.58%), Query Frame = 1
BLAST of Spo17016.1 vs. NCBI nr
Match: gi|731336057|ref|XP_010679050.1| (PREDICTED: 40S ribosomal protein S24-1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 223.0 bits (567), Expect = 4.000e-55 Identity = 112/124 (90.32%), Postives = 120/124 (96.77%), Query Frame = 1
BLAST of Spo17016.1 vs. NCBI nr
Match: gi|902185865|gb|KNA10566.1| (hypothetical protein SOVF_143160 [Spinacia oleracea]) HSP 1 Score: 221.1 bits (562), Expect = 1.500e-54 Identity = 114/124 (91.94%), Postives = 118/124 (95.16%), Query Frame = 1
BLAST of Spo17016.1 vs. NCBI nr
Match: gi|567880979|ref|XP_006433048.1| (hypothetical protein CICLE_v10002819mg [Citrus clementina]) HSP 1 Score: 220.7 bits (561), Expect = 2.000e-54 Identity = 113/124 (91.13%), Postives = 118/124 (95.16%), Query Frame = 1
BLAST of Spo17016.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RA52_SPIOL (40S ribosomal protein S24 OS=Spinacia oleracea GN=SOVF_096540 PE=3 SV=1) HSP 1 Score: 239.2 bits (609), Expect = 3.800e-60 Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 1
BLAST of Spo17016.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSR5_SPIOL (40S ribosomal protein S24 OS=Spinacia oleracea GN=SOVF_032490 PE=3 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 1.400e-57 Identity = 119/124 (95.97%), Postives = 121/124 (97.58%), Query Frame = 1
BLAST of Spo17016.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CDU8_BETVU (40S ribosomal protein S24 OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g119340 PE=3 SV=1) HSP 1 Score: 223.0 bits (567), Expect = 2.800e-55 Identity = 112/124 (90.32%), Postives = 120/124 (96.77%), Query Frame = 1
BLAST of Spo17016.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVM4_SPIOL (40S ribosomal protein S24 OS=Spinacia oleracea GN=SOVF_143160 PE=3 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 1.100e-54 Identity = 114/124 (91.94%), Postives = 118/124 (95.16%), Query Frame = 1
BLAST of Spo17016.1 vs. UniProtKB/TrEMBL
Match: V4SF69_9ROSI (40S ribosomal protein S24 OS=Citrus clementina GN=CICLE_v10002819mg PE=3 SV=1) HSP 1 Score: 220.7 bits (561), Expect = 1.400e-54 Identity = 113/124 (91.13%), Postives = 118/124 (95.16%), Query Frame = 1
BLAST of Spo17016.1 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1) HSP 1 Score: 213.8 bits (543), Expect = 1.500e-54 Identity = 109/124 (87.90%), Postives = 118/124 (95.16%), Query Frame = 1
BLAST of Spo17016.1 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2) HSP 1 Score: 206.5 bits (524), Expect = 2.500e-52 Identity = 104/124 (83.87%), Postives = 116/124 (93.55%), Query Frame = 1
BLAST of Spo17016.1 vs. ExPASy Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 4.200e-36 Identity = 79/125 (63.20%), Postives = 96/125 (76.80%), Query Frame = 1
BLAST of Spo17016.1 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 4.200e-36 Identity = 80/119 (67.23%), Postives = 93/119 (78.15%), Query Frame = 1
BLAST of Spo17016.1 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 4.200e-36 Identity = 80/119 (67.23%), Postives = 93/119 (78.15%), Query Frame = 1
BLAST of Spo17016.1 vs. TAIR (Arabidopsis)
Match: AT3G04920.1 (Ribosomal protein S24e family protein) HSP 1 Score: 213.8 bits (543), Expect = 8.600e-56 Identity = 109/124 (87.90%), Postives = 118/124 (95.16%), Query Frame = 1
BLAST of Spo17016.1 vs. TAIR (Arabidopsis)
Match: AT5G28060.1 (Ribosomal protein S24e family protein) HSP 1 Score: 206.5 bits (524), Expect = 1.400e-53 Identity = 104/124 (83.87%), Postives = 116/124 (93.55%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17016.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo17016.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo17016.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo17016.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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