Spo17042 (gene)

Overview
NameSpo17042
Typegene
OrganismSpinacia oleracea (Spinach)
Description(BnaA05g17390D protein) (BnaC05g30360D protein)
Locationchr3 : 42826647 .. 42830277 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAGGCGAAGCTCTTTTCCAATCTTTACTTCCAACACCTTGTTACTAAGGCGATCTAGGTATGACATAATTTAATATTAAAAGAAATTGTTATTTTCCCTGCACTTTAATCATTGGTTAACATATTTGAGCTATAAACAATAAGAGCCACACAAACAGGGGTGAGACTTTAGAGGGTCAAGACTCCACACACACAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATGGAAGGAATCGGAATGCAGATAGGAGTGCCAGTAGCAGCCATCATAGCAGTTGCTGCAGTCACGTTCTACGCAGTTAGCTTTTCTGAAATTCGCGAGGTATTATTTCTCAATCTCAATCTCAATCTCAATCTCACTGTCACTCTTGAATCTTTAACCTTTGAGTTTGCTTAGCCTTTGAAACAATAATGAAAACAAGACGATGGGTGTTATACAGAAATCTTTTAAAGAATATGAAGACAAGGAAGACGAAGATGGCATGGGATTTCAGTCCTCTATGAGCTCCAGAGAGCGCCGCGCTCGCAGAAAAGCTAACAAGAAATCCAACACTTGAGAGTAAACTCTGAAATCCCCCACACTCCCTCCGTCCCAGATTAGTTTTTCAAAATTATGGGTATGGTATCATTTTATAAAAGGAACCCTTTATAATAAATGAGTTTTTCTGCCATTAATTGATTTTGATTTTTAACTACTTGTACGTAGTATAATTACATTGGGAAATTTAATCAAACCACTAGCATCAAGAAAGATTCAGTAAAAACATTAAGGTAAATATAGAAAGATGCTTTTATTAAGGTATAGTTACTATTCTTACAATGACTAGTAGCCATGCTAAGGCAACTGTCAATCCTTCCATGTACACAAAGGAAGAACCAACTTCATTTTCGCCATTATCATTTATCAACCAGCTACGCAAAGGCAAAGGCAAAGGCAAAGGCAAAGATCCTTACTGCTTTTGGGCCTTGAGCTCCTTCACTCTCTCTTCAGTGTCCTTCAATGCTTTCCCATATTTAGTAATTAACTGATGCACGTTCACATACAAAACAATTAATATAATATTCGCATTCATTATGTGCCAAGGAGTAGGACTATATCAGTTTCGTAAACGTTATGCAAAATAAGTAGAAATTTCTAGAGGTTCTCTCAATTCAATAGGAATAGGAATGTTCACCTCATCAATTTCTTCCTCAGATATAACCAGTGGAGGGCATATCATAATGTTATCACCAGCTACACGGACCAACATTCCATGCTTCTGACACTGTGCTCCAAAATATGCACCTACTCCTGTATTTTAACATAGCCAGGACTTTGAGGTGATGAAACCATACTATTTGACTAATAATATATGCACAAAAAAGAAAAAACTAGGATCAGATCATAAGAAATCAACTATGGAGTAATAGAAAGCAGATAACAAAGACTTGCCCCATTCAGGAGGAAATAGGTCATTTGGTGACTTGTTATCCGTGAATTCAGTTCCCATAATTAAGCCAGTGCCTCTTATCTGTAGAATAAGATTTCAAAACATTGTTAAATGCTAGCAAGCAGCAATAAAACGTGTTCGGCAAAAACAAACACTCGAATACATAGATACCTCGCCAATGATTGGACTGTCAGCATAAGCTCTCATTCCATCTTGAAATTTTGGTGTAAGCTTCCTTACTCGCTCCACAATATTTTTTTCCCTGAAAAAAGGTATCAGCTTTCACCAATTTTAGACAGACATAACAATCCGTAACAGCAATGTATGAATACATTCAATAGTGTCAGAGTCTAGACCCTAACACGATGACAGGGCAGGCGCAAATACAGTTTCCTGGTTACTTCACAACTTGTAAACTAGAACGTCAAGCCAAACCTTCAGACATTCTAGACTTGCCTAACACAAAAGAGTGAAGTGTAAGCCCATAGTGCGGGCAAGTCACGCGACTCAACTCTCAAGCATGCTTCGCTTAATTTTCCTTACCAAATGTGTAATAGCTCTCTAGGATAACTAATGATATGTCTCCAAGGTTGGCCTTCAATCACAACCTTTTTACAGTATGTTTAGCTAAACTAAGTTTCCAGTTTCTGCACGAGTTTCCATTCTATCCAAAAAGTCAGAAGACTAAATTTCCTTTCTTTCCATTTGAAAGACACATGATAGACAGTTAGACTCAAAGAAAACAGAAAAGTTCATGGTTGCAGAGGAATTTGCAACATAGCTTAACCCGATCAAATGAGCTTCCACAGGAAAAGGGAGCAAAACTAAGATTATGAACAACTGTTGATCTAGGGGGGAGCAAGGATCCAGGAAAATCATACTTGTACAACTTCAGTGCTTCGAGTGCAACAGCGCATGAAACTGGGTGACCAGAATACGTAAATCCATGAGAAAAGGAACCTATAGTTAAATTATCAAATCCATTAATGACTTCCGGCAGAGTATTAAACTAATTTTTTTTCCAAATAAATGCTGTACATATTGTAATAGAACTATACCAAGTTTGTTGCTTTGATTATATATGACTTCTGAGATTTCAGGGCTAACAAGAATAGCTCCAATGGGCATGTAAGCTGAAGATAGAGCCTGCAAAAGCAACGGAAATAAACAACCAAGTACCTAAAGCACAAAGAGACCGAGATATTAAAACAGGATGTCTACCTTGGCCATGGAGACAAGGTCTGGCTTAAGGTTGTATTTATCAGAACCAAACATTTCTCCAAGTCTTCCAAACGCACAGATAACCTACAGTGGACAAAACAGAAGGACGGGGGAAAAGTTTGCATGAACAAGAGGATGAAAGTTAAGAAGCGGACAGCACAATAGTTATCTCCTCGTCCCGTAAGAGGAAAAGTTTGCATGAACAAGGGAAAAGAAGTGTATGTATATATACACAATTTATATAACACATACCTCATCTGCAATCAAGAGGATGTCATATTTCTTCAATATTACTTGAACCTGTACCAAATATGACAGCACGATAAAGTTCAACAAAAAGAAATTTGAAAAGCTAGAAACCACCAAACAAATACCAATTATGCATGAGACATAGGAGAGAAATTGCCATATCAAATACAAAATCCAGTAATCCGTCAAAATGACCAACGAACTTAATAAATTCCCCCTCACAGTGTTTCACGGCATTAGCTACCATCACGCATAGATCTATGACATGCTACACTATACTGGTATGAAATATGGATACGTAAATAAGAAAGAGAACATATCATCTTGGCATTTAAGGCGACCCATTGGAGTTGAAACTTAGCAGAAAGACAAGGGAATAGAAGTTGCTGCCTTGCTGGTGGCTCATCATGACTGAGAATATGTTCGAACTTCAGGACAGAAGGGTTAGCTTGCTATATCTCCTATTTCCATAGTACACTCCTATTACTGCAACTTTTAATAACACCATTTAGCAATCTAGCTTTCCAGTTCAGAATATTTTTTTTCCGATCATTCGTTGAAAGGTTGTTTTATTACTTATAACTTTGGTTACTCATAAGTCAGTCTCAAAGTGTGACTAAAGATCGCATGTAATGGGTAAGTACAGAGTCGCTCAATTGTGGTACATAATTCCAAACATAAAAAATTACTATTCAGATTCAGACAGTAT

mRNA sequence

CCAGGCGAAGCTCTTTTCCAATCTTTACTTCCAACACCTTGTTACTAAGGCGATCTAGGTATGACATAATTTAATATTAAAAGAAATTGTTATTTTCCCTGCACTTTAATCATTGGTTAACATATTTGAGCTATAAACAATAAGAGCCACACAAACAGGGGTGAGACTTTAGAGGGTCAAGACTCCACACACACAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATGGAAGGAATCGGAATGCAGATAGGAGTGCCAGTAGCAGCCATCATAGCAGTTGCTGCAGTCACGTTCTACGCAGTTAGCTTTTCTGAAATTCGCGAGAAATCTTTTAAAGAATATGAAGACAAGGAAGACGAAGATGGCATGGGATTTCAGTCCTCTATGAGCTCCAGAGAGCGCCGCGCTCGCAGAAAAGCTAACAAGAAATCCAACACTTGAGAGTAAACTCTGAAATCCCCCACACTCCCTCCGTCCCAGATTAGTTTTTCAAAATTATGGGGCTAACAAGAATAGCTCCAATGGGCATGTAAGCTGAAGATAGAGCCTGCAAAAGCAACGGAAATAAACAACCAAGTACCTAAAGCACAAAGAGACCGAGATATTAAAACAGGATGTCTACCTTGGCCATGGAGACAAGGTCTGGCTTAAGGTTGTATTTATCAGAACCAAACATTTCTCCAAGTCTTCCAAACGCACAGATAACCTACAGTGGACAAAACAGAAGGACGGGGGAAAAGTTTGCATGAACAAGAGGATGAAAGTTAAGAAGCGGACAGCACAATAGTTATCTCCTCGTCCCGTAAGAGGAAAAGTTTGCATGAACAAGGGAAAAGAAGTGTATGTATATATACACAATTTATATAACACATACCTCATCTGCAATCAAGAGGATGTCATATTTCTTCAATATTACTTGAACCTGTACCAAATATGACAGCACGATAAAGTTCAACAAAAAGAAATTTGAAAAGCTAGAAACCACCAAACAAATACCAATTATGCATGAGACATAGGAGAGAAATTGCCATATCAAATACAAAATCCAGTAATCCGTCAAAATGACCAACGAACTTAATAAATTCCCCCTCACAGTGTTTCACGGCATTAGCTACCATCACGCATAGATCTATGACATGCTACACTATACTGGTATGAAATATGGATACGTAAATAAGAAAGAGAACATATCATCTTGGCATTTAAGGCGACCCATTGGAGTTGAAACTTAGCAGAAAGACAAGGGAATAGAAGTTGCTGCCTTGCTGGTGGCTCATCATGACTGAGAATATGTTCGAACTTCAGGACAGAAGGGTTAGCTTGCTATATCTCCTATTTCCATAGTACACTCCTATTACTGCAACTTTTAATAACACCATTTAGCAATCTAGCTTTCCAGTTCAGAATATTTTTTTTCCGATCATTCGTTGAAAGGTTGTTTTATTACTTATAACTTTGGTTACTCATAAGTCAGTCTCAAAGTGTGACTAAAGATCGCATGTAATGGGTAAGTACAGAGTCGCTCAATTGTGGTACATAATTCCAAACATAAAAAATTACTATTCAGATTCAGACAGTAT

Coding sequence (CDS)

ATGGAAGGAATCGGAATGCAGATAGGAGTGCCAGTAGCAGCCATCATAGCAGTTGCTGCAGTCACGTTCTACGCAGTTAGCTTTTCTGAAATTCGCGAGAAATCTTTTAAAGAATATGAAGACAAGGAAGACGAAGATGGCATGGGATTTCAGTCCTCTATGAGCTCCAGAGAGCGCCGCGCTCGCAGAAAAGCTAACAAGAAATCCAACACTTGA

Protein sequence

MEGIGMQIGVPVAAIIAVAAVTFYAVSFSEIREKSFKEYEDKEDEDGMGFQSSMSSRERRARRKANKKSNT
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo17042.1Spo17042.1mRNA


Homology
[Close]
BLAST of Spo17042.1 vs. NCBI nr
Match: gi|902236876|gb|KNA24572.1| (hypothetical protein SOVF_014270 [Spinacia oleracea])

HSP 1 Score: 127.9 bits (320), Expect = 7.200e-27
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 1  MEGIGMQIGVPVAAIIAVAAVTFYAVSFSEIREKSFKEYEDKEDEDGMGFQSSMSSRERR 60
          MEGIGMQIGVPVAAIIAVAAVTFYAVSFSEIREKSFKEYEDKEDEDGMGFQSSMSSRERR
Sbjct: 1  MEGIGMQIGVPVAAIIAVAAVTFYAVSFSEIREKSFKEYEDKEDEDGMGFQSSMSSRERR 60

Query: 61 ARRKANKKSNT 72
          ARRKANKKSNT
Sbjct: 61 ARRKANKKSNT 71
[Close]
BLAST of Spo17042.1 vs. NCBI nr
Match: gi|731338114|ref|XP_010680153.1| (PREDICTED: uncharacterized protein LOC104895370 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 97.8 bits (242), Expect = 8.000e-18
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 1 

		  

Query: 1  MEGIGMQIGVPVAAIIAVAAVTFYAVSFSEIREKSFKEYEDKEDEDGMGFQSSMSSRERR 60
          MEGIGMQI VPV  I+AVAA TFYAVSF+EIREKSF+E ++KEDED M F+ S+SS+ERR
Sbjct: 1  MEGIGMQIMVPVVGIVAVAAATFYAVSFAEIREKSFRELDEKEDEDDMVFKYSLSSKERR 60

Query: 61 ARRKANKKSNT 72
          AR+KANKKSNT
Sbjct: 61 ARKKANKKSNT 71
[Close]
BLAST of Spo17042.1 vs. NCBI nr
Match: gi|565484944|ref|XP_006300112.1| (hypothetical protein CARUB_v10016341mg [Capsella rubella])

HSP 1 Score: 79.7 bits (195), Expect = 2.200e-12
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1 

		  

Query: 1  MEGIGMQIGVPVAAIIAVAAVTFYAVSFSEIREKSFKEYEDKEDEDGMGFQSSMSSRERR 60
          MEGI   I +PV  I+AV+ VTFYAVSF+EIREKSFK+  D E++DG GF++S+SSRERR
Sbjct: 1  MEGIS-HIALPVLGIVAVSVVTFYAVSFAEIREKSFKDVYDSENKDGAGFKNSLSSRERR 60

Query: 61 ARRKANKK 69
          +RR+ANKK
Sbjct: 61 SRREANKK 67
[Close]
BLAST of Spo17042.1 vs. NCBI nr
Match: gi|567874359|ref|XP_006429769.1| (hypothetical protein CICLE_v10013268mg [Citrus clementina])

HSP 1 Score: 79.0 bits (193), Expect = 3.800e-12
Identity = 45/72 (62.50%), Postives = 63/72 (87.50%), Query Frame = 1 

		  

Query: 1  MEGIGMQIGVPVAAIIAVAAVTFYAVSFSEIREKSFKEYEDK-EDEDGMGFQSSMSSRER 60
          M+G+ MQ+G+PV  I+A AAVTFYAVSF+E+REKSF++ +D+ EDE+G GFQ S+SSRER
Sbjct: 1  MDGM-MQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRER 60

Query: 61 RARRKANKKSNT 72
          R+RRKA+K++ +
Sbjct: 61 RSRRKADKQAKS 71
[Close]
BLAST of Spo17042.1 vs. NCBI nr
Match: gi|848859805|ref|XP_012830775.1| (PREDICTED: uncharacterized protein LOC105951863 [Erythranthe guttata])

HSP 1 Score: 77.0 bits (188), Expect = 1.500e-11
Identity = 43/63 (68.25%), Postives = 56/63 (88.89%), Query Frame = 1 

		  

Query: 7  QIGVPVAAIIAVAAVTFYAVSFSEIREKSFKEYEDKEDEDGMGFQSSMSSRERRARRKAN 66
          Q+G+PV  I+AVAA+TFY VSFSE+REKSFK+ E++  ED +GF+SS+SSRERRARRKA+
Sbjct: 8  QMGLPVLGIVAVAALTFYVVSFSELREKSFKDLEER--EDSVGFRSSLSSRERRARRKAD 67

Query: 67 KKS 70
          K+S
Sbjct: 68 KQS 68
[Close]
BLAST of Spo17042.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0B0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_014270 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.000e-27
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 1  MEGIGMQIGVPVAAIIAVAAVTFYAVSFSEIREKSFKEYEDKEDEDGMGFQSSMSSRERR 60
          MEGIGMQIGVPVAAIIAVAAVTFYAVSFSEIREKSFKEYEDKEDEDGMGFQSSMSSRERR
Sbjct: 1  MEGIGMQIGVPVAAIIAVAAVTFYAVSFSEIREKSFKEYEDKEDEDGMGFQSSMSSRERR 60

Query: 61 ARRKANKKSNT 72
          ARRKANKKSNT
Sbjct: 61 ARRKANKKSNT 71
[Close]
BLAST of Spo17042.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F0P8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g132190 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.500e-18
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 1 

		  

Query: 1  MEGIGMQIGVPVAAIIAVAAVTFYAVSFSEIREKSFKEYEDKEDEDGMGFQSSMSSRERR 60
          MEGIGMQI VPV  I+AVAA TFYAVSF+EIREKSF+E ++KEDED M F+ S+SS+ERR
Sbjct: 1  MEGIGMQIMVPVVGIVAVAAATFYAVSFAEIREKSFRELDEKEDEDDMVFKYSLSSKERR 60

Query: 61 ARRKANKKSNT 72
          AR+KANKKSNT
Sbjct: 61 ARKKANKKSNT 71
[Close]
BLAST of Spo17042.1 vs. UniProtKB/TrEMBL
Match: R0I4U8_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10016341mg PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.600e-12
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1 

		  

Query: 1  MEGIGMQIGVPVAAIIAVAAVTFYAVSFSEIREKSFKEYEDKEDEDGMGFQSSMSSRERR 60
          MEGI   I +PV  I+AV+ VTFYAVSF+EIREKSFK+  D E++DG GF++S+SSRERR
Sbjct: 1  MEGIS-HIALPVLGIVAVSVVTFYAVSFAEIREKSFKDVYDSENKDGAGFKNSLSSRERR 60

Query: 61 ARRKANKK 69
          +RR+ANKK
Sbjct: 61 SRREANKK 67
[Close]
BLAST of Spo17042.1 vs. UniProtKB/TrEMBL
Match: A0A067FLP3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035171mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.700e-12
Identity = 45/72 (62.50%), Postives = 63/72 (87.50%), Query Frame = 1 

		  

Query: 1  MEGIGMQIGVPVAAIIAVAAVTFYAVSFSEIREKSFKEYEDK-EDEDGMGFQSSMSSRER 60
          M+G+ MQ+G+PV  I+A AAVTFYAVSF+E+REKSF++ +D+ EDE+G GFQ S+SSRER
Sbjct: 1  MDGM-MQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRER 60

Query: 61 RARRKANKKSNT 72
          R+RRKA+K++ +
Sbjct: 61 RSRRKADKQAKS 71
[Close]
BLAST of Spo17042.1 vs. UniProtKB/TrEMBL
Match: V4UTQ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013268mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.700e-12
Identity = 45/72 (62.50%), Postives = 63/72 (87.50%), Query Frame = 1 

		  

Query: 1  MEGIGMQIGVPVAAIIAVAAVTFYAVSFSEIREKSFKEYEDK-EDEDGMGFQSSMSSRER 60
          M+G+ MQ+G+PV  I+A AAVTFYAVSF+E+REKSF++ +D+ EDE+G GFQ S+SSRER
Sbjct: 1  MDGM-MQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRER 60

Query: 61 RARRKANKKSNT 72
          R+RRKA+K++ +
Sbjct: 61 RSRRKADKQAKS 71
[Close]
BLAST of Spo17042.1 vs. TAIR (Arabidopsis)
Match: AT3G22210.1 (unknown protein)

HSP 1 Score: 71.6 bits (174), Expect = 2.200e-13
Identity = 43/68 (63.24%), Postives = 56/68 (82.35%), Query Frame = 1 

		  

Query: 1  MEGIGMQIGVPVAAIIAVAAVTFYAVSFSEIREKSFKEYEDKEDEDGMGFQSSMSSRERR 60
          MEGI   I +PV  I+AV+ VTFYAVSF+EIREKSFK+  D E+E  +GF++S+SSRERR
Sbjct: 1  MEGIS-HIALPVLGIVAVSVVTFYAVSFAEIREKSFKDVYDSENE--VGFKTSLSSRERR 60

Query: 61 ARRKANKK 69
          ++R+ANKK
Sbjct: 61 SKREANKK 65
The following BLAST results are available for this feature:
BLAST of Spo17042.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902236876|gb|KNA24572.1|7.2e-27100.hypothetical protein SOVF_0142... [more]
gi|731338114|ref|XP_010680153.1|8.0e-1876.0PREDICTED: uncharacterized pro... [more]
gi|565484944|ref|XP_006300112.1|2.2e-1266.1hypothetical protein CARUB_v10... [more]
gi|567874359|ref|XP_006429769.1|3.8e-1262.5hypothetical protein CICLE_v10... [more]
gi|848859805|ref|XP_012830775.1|1.5e-1168.2PREDICTED: uncharacterized pro... [more]
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BLAST of Spo17042.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9S0B0_SPIOL5.0e-27100.Uncharacterized protein OS=Spi... [more]
A0A0J8F0P8_BETVU5.5e-1876.0Uncharacterized protein OS=Bet... [more]
R0I4U8_9BRAS1.6e-1266.1Uncharacterized protein OS=Cap... [more]
A0A067FLP3_CITSI2.7e-1262.5Uncharacterized protein OS=Cit... [more]
V4UTQ1_9ROSI2.7e-1262.5Uncharacterized protein OS=Cit... [more]
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BLAST of Spo17042.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo17042.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G22210.12.2e-1363.2unknown protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37225FAMILY NOT NAMEDcoord: 1..71
score: 3.9

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0015693 magnesium ion transport
biological_process GO:0010540 basipetal auxin transport
biological_process GO:0006308 DNA catabolic process
biological_process GO:0007186 G-protein coupled receptor signaling pathway
biological_process GO:0006730 one-carbon metabolic process
biological_process GO:0018345 protein palmitoylation
biological_process GO:0018342 protein prenylation
biological_process GO:0009845 seed germination
biological_process GO:0008152 metabolic process
biological_process GO:0016049 cell growth
biological_process GO:0006857 oligopeptide transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0006468 protein phosphorylation
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0016197 endosomal transport
biological_process GO:0009306 protein secretion
biological_process GO:0071555 cell wall organization
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0006508 proteolysis
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006298 mismatch repair
biological_process GO:0006281 DNA repair
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0015976 carbon utilization
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0000902 cell morphogenesis
biological_process GO:0048527 lateral root development
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0009944 polarity specification of adaxial/abaxial axis
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0010014 meristem initiation
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0009987 cellular process
biological_process GO:0043087 regulation of GTPase activity
biological_process GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process
biological_process GO:0016043 cellular component organization
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0007033 vacuole organization
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0016311 dephosphorylation
biological_process GO:0006651 diacylglycerol biosynthetic process
biological_process GO:0006687 glycosphingolipid metabolic process
biological_process GO:0048868 pollen tube development
biological_process GO:0035556 intracellular signal transduction
biological_process GO:0046339 diacylglycerol metabolic process
biological_process GO:0043547 positive regulation of GTPase activity
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0010075 regulation of meristem growth
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005773 vacuole
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005576 extracellular region
cellular_component GO:0055029 nuclear DNA-directed RNA polymerase complex
cellular_component GO:0005622 intracellular
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005730 nucleolus
cellular_component GO:0016020 membrane
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0009507 chloroplast
cellular_component GO:0005834 heterotrimeric G-protein complex
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005774 vacuolar membrane
molecular_function GO:0004089 carbonate dehydratase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0005096 GTPase activator activity
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0008289 lipid binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0035673 oligopeptide transmembrane transporter activity
molecular_function GO:0004871 obsolete signal transducer activity
molecular_function GO:0004435 phosphatidylinositol phospholipase C activity
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0042578 phosphoric ester hydrolase activity
molecular_function GO:0047874 dolichyldiphosphatase activity
molecular_function GO:0008195 phosphatidate phosphatase activity
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0015095 magnesium ion transmembrane transporter activity
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0016853 isomerase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004650 polygalacturonase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004177 aminopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0030983 mismatched DNA binding
molecular_function GO:0005543 phospholipid binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo186940.72Barchart | Table
Spo003890.71Barchart | Table
Spo137710.70Barchart | Table
Spo007830.69Barchart | Table
Spo158420.69Barchart | Table
Spo037350.69Barchart | Table
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