Spo17056 (gene) | SpinachBase

Overview


Name	Spo17056
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Ribosomal L32p protein family
Location	SpoScf_02271 : 58328 .. 61372 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATCCCTCTCCACTCTTAAACCCAGCCGAGTTTCCCCAAACACAAAGAAGCTCACTATTTTTCTACATCAACGCAAAAAACTGAAAAAAAGTCCCTGGATTTGATATCATTTTTCCTTGTGGGGATTTCTCACAGAGTAGAAAGATAGCGAATTGATGGCGTTCAGATTGGGAATACAAAGAAATTTGCAGGGAAATGTTGATGGGTGCCTGCATACTGTCAGAAGATTTACCCACGCTTTTGCACTTCCACCATCTTTCGCCAATTCAATTGACCCAATATCATCGCCCCCTTCAATTCTTCCTGAAGATGATTCCAGTTTTTCCTGCGAATTTCCAGAATCTGCTATTGGGAGCGGATTCATGGACCTCATGGCTGTTCCCAAAAAGAAGGTAAACGAATTAAATTTTTTATTATGCCCTCATTTTTCGTTTAATTTTAAAAACACAATTAAGTAATGTTGTTTGTTAGATTGGTTTCAATTTCAGTTCCTTTGTTGTTCTTTGGGGATTTTTGGTTGCTGGAGTATTTAGGGTTAAGGAATAACGTTTACAGTTTTTTGGGTTTAGGGTTTAGCTACTGTGCTACATTGTTGGCGATTTATGTTAATTGTTGCTTGTTCCTGACTTTAGTGTGCTCTTGGTGTCATTTGCGTGCTTCAATTTACTTGATATTGTCCCTGCTCAGTTGAAAACGGGTGTTAATTGTTGATTTGGAGGCATGCTGATACGAAATTTCTACAATATATGTACTGATGTTTATGATTTCTAGATTTTGGACTTGTTGTTGTTGGGTTATTGCCTGCATTTTCAAAATTGTTGAATCCTGAAGAGGGTGAGGATATCTCAATATTAGCTACTATGTCGATGGTTTCTGGTTTGTTTCTTGGGGCCGTGGAGTGTGAATTAAATTTTGATTGCTGCATTATCTTGTTTTTGGGTGTAGTAGTTGCTAGCAAACTAAAATATTGAAGCTGTTTGTTGGTTCTTACGAGGGTATTAATTCAATTGGCACTGTATCGTAGCTGCTGTTCCGACTTAGAAAACACTTGTTGTTAAGGACCTCATGTTTGATATGAGTGATACTCGTGGAATTTGGTTTTCCTTTTTTCTTATGCTGCCTGTTTTTGTAGACATCTCATCATGATAGTTTAATTTGGGAAAGGTTAGTACAAAAGGCTTGTTCTAGTGCATATTAACAGTCATGTCACCTTGCCACTGAGTTCTTTAGACACCAGATTTTGATGTTCTTTTGAACTGGGCTGGTTTAAATGTTGTGATGTCTTTATTGAAAAAATTGCGCTGTTTGTAGAAAATGATTTTAACAGGTATATAAGCAAAAGAGGTTAACACCTGTTATAACCTACAAAGAGGTTTGGCTAGTTGCATAATTTACTAATGTGAATCATATTTGCTTGATCAGATTTCAAAATACAAGAGAGGCCTTAGAAACGGGCCGAAGGCTTTGAAACCTACCCCTGTTATAGTCCGATGCAAGTAAGGTTTTTCAACTTATATTTGTTTGTGAGTTTTATGTTTGACTTGGCAAGAACTGTGTAAAGTATTGTAGCATTTATGAGTTGTATAGAAGATATAAAGGTATACTAACATGTGGATCCTCTTTGGGGTCGCAAGTACATTAGAATTTGATTAAGAATGATATTATGCAAGTCCCCTTCACACAGTTTATTATAGTGGGAGTATGGGACATTTGTGAACTCATTCTCCTAATTGGATATCATATGATAATATCCAGTGTGAATTATACACCAGATAGGACAGTAAAGTCAGTGGCAAACCATTGTATTATTTTTGGCCATTTGAGTATTTCTGTAGCTAGATCTGATTGTCTTTGGAGCAGTGGGGAATTTCTTGTTTCCTACTCCCTTTGTCCCAAATGGAACTTCACATTTGGGGTTGGCACTAATATTAAGAGTATTTTTTTTTAATGTAAAATATAAAAAGTGGCCAGAGAGAAAAAACAAATTTCAGCATGTTGGTCAAGAACAGCATAGTTTATGAAGAGATGAAGAGAGAAAAGATAGAAGTTTGTAAAAGAAATGCGAAAATCATTTTGGGCACCCAAAAATAGAATGTGTGAAGTTTATTTTAATATTTAATAAAGCAGATGGAGTAAGAAAGAATGCTGAATACTAAGAGCAATGTAATTGTCCAATCTTAGTGGCATTTTTTTCTATCTTAATAAAGAGGCATCTTGGAGAAAACCACCTGAATCACAGAGATTGGTCAAATTTCCCAACGCTTTGTGTGTGTAAATATTATGATGTCATGGAATTAAACTCCCAGTTTACCACCTTGTCTCGCTAAATTTAAGCAGTGTTTGCAGTTGTATTTATGAATTAACCTCTACTATTGCCTGTAGGAGTTGTGGTCGTGTGAAGTTGCCACATTTCTACTGTTGCAGTGGCCGTGTTGAAGATTCTGGCGAGAGAAGCGATGCAGTCAATTGATTGAGCTCTTTGCTTTAACGGAGTAGAACATGAGTTTTCTTCCAATTTCCTACCGTTGATAAAGTGAAACTTGGAATTTGCTAAAGTTGAATGTGCACGGATATATGATCATTGCAATTTGCATATGCATATGCTTATTTCCTATAGGTATTTAGGTAAATTTTGATAATCTGGTGAAATATCAAAGTGCTTCGCTCTTATTCTGGTTATGGTCTCCGAATTCTATTGCTTTATTCACAAAATTAAGTAATAAAATACCGCAATTTTGAATACAGACTTCTTATTATCGGGATTCTGTTCCCTTAGAAGTTGGTAATACCTTGGAATCAGGATGCCAACACATGTGGATGAAATTTTACACTTGGGTTTTGTTGCGCCATGGTTTTGTTGGAAAAAACTTTATCTACCCACCGGGTAAACTACCCACCACTAATAGAGAGTGTGGTAGTGGAATCCATATCAGCTTTATTAATTGTTTTTTAATGTTCTATTAGTAGTGGGTTATCTACCCAGTGGGTAGATGTAGCAATGTCCGGTTTTGTTGCATTTTTTAGAAGATTTATTGTACTTACTG

mRNA sequence

TTATCCCTCTCCACTCTTAAACCCAGCCGAGTTTCCCCAAACACAAAGAAGCTCACTATTTTTCTACATCAACGCAAAAAACTGAAAAAAAGTCCCTGGATTTGATATCATTTTTCCTTGTGGGGATTTCTCACAGAGTAGAAAGATAGCGAATTGATGGCGTTCAGATTGGGAATACAAAGAAATTTGCAGGGAAATGTTGATGGGTGCCTGCATACTGTCAGAAGATTTACCCACGCTTTTGCACTTCCACCATCTTTCGCCAATTCAATTGACCCAATATCATCGCCCCCTTCAATTCTTCCTGAAGATGATTCCAGTTTTTCCTGCGAATTTCCAGAATCTGCTATTGGGAGCGGATTCATGGACCTCATGGCTGTTCCCAAAAAGAAGATTTCAAAATACAAGAGAGGCCTTAGAAACGGGCCGAAGGCTTTGAAACCTACCCCTGTTATAGTCCGATGCAAGAGTTGTGGTCGTGTGAAGTTGCCACATTTCTACTGTTGCAGTGGCCGTGTTGAAGATTCTGGCGAGAGAAGCGATGCAGTCAATTGATTGAGCTCTTTGCTTTAACGGAGTAGAACATGAGTTTTCTTCCAATTTCCTACCGTTGATAAAGTGAAACTTGGAATTTGCTAAAGTTGAATGTGCACGGATATATGATCATTGCAATTTGCATATGCATATGCTTATTTCCTATAGGTATTTAGGTAAATTTTGATAATCTGGTGAAATATCAAAGTGCTTCGCTCTTATTCTGGTTATGGTCTCCGAATTCTATTGCTTTATTCACAAAATTAAGTAATAAAATACCGCAATTTTGAATACAGACTTCTTATTATCGGGATTCTGTTCCCTTAGAAGTTGGTAATACCTTGGAATCAGGATGCCAACACATGTGGATGAAATTTTACACTTGGGTTTTGTTGCGCCATGGTTTTGTTGGAAAAAACTTTATCTACCCACCGGGTAAACTACCCACCACTAATAGAGAGTGTGGTAGTGGAATCCATATCAGCTTTATTAATTGTTTTTTAATGTTCTATTAGTAGTGGGTTATCTACCCAGTGGGTAGATGTAGCAATGTCCGGTTTTGTTGCATTTTTTAGAAGATTTATTGTACTTACTG

Coding sequence (CDS)

ATGGCGTTCAGATTGGGAATACAAAGAAATTTGCAGGGAAATGTTGATGGGTGCCTGCATACTGTCAGAAGATTTACCCACGCTTTTGCACTTCCACCATCTTTCGCCAATTCAATTGACCCAATATCATCGCCCCCTTCAATTCTTCCTGAAGATGATTCCAGTTTTTCCTGCGAATTTCCAGAATCTGCTATTGGGAGCGGATTCATGGACCTCATGGCTGTTCCCAAAAAGAAGATTTCAAAATACAAGAGAGGCCTTAGAAACGGGCCGAAGGCTTTGAAACCTACCCCTGTTATAGTCCGATGCAAGAGTTGTGGTCGTGTGAAGTTGCCACATTTCTACTGTTGCAGTGGCCGTGTTGAAGATTCTGGCGAGAGAAGCGATGCAGTCAATTGA

Protein sequence

MAFRLGIQRNLQGNVDGCLHTVRRFTHAFALPPSFANSIDPISSPPSILPEDDSSFSCEFPESAIGSGFMDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCGRVKLPHFYCCSGRVEDSGERSDAVN

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo17056.1	Spo17056.1	mRNA

Homology

[Close]

BLAST of Spo17056.1 vs. NCBI nr
Match: gi|902221200|gb|KNA18820.1| (hypothetical protein SOVF_066860 [Spinacia oleracea])

HSP 1 Score: 275.8 bits (704), Expect = 4.000e-71
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1


		  
Query: 1   MAFRLGIQRNLQGNVDGCLHTVRRFTHAFALPPSFANSIDPISSPPSILPEDDSSFSCEF 60
           MAFRLGIQRNLQGNVDGCLHTVRRFTHAFALPPSFANSIDPISSPPSILPEDDSSFSCEF
Sbjct: 1   MAFRLGIQRNLQGNVDGCLHTVRRFTHAFALPPSFANSIDPISSPPSILPEDDSSFSCEF 60

Query: 61  PESAIGSGFMDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCGRVKLPHFYCCSGR 120
           PESAIGSGFMDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCGRVKLPHFYCCSGR
Sbjct: 61  PESAIGSGFMDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCGRVKLPHFYCCSGR 120

Query: 121 VEDSGERSDAVN 133
           VEDSGERSDAVN
Sbjct: 121 VEDSGERSDAVN 132

[Close]

BLAST of Spo17056.1 vs. NCBI nr
Match: gi|731319956|ref|XP_010670547.1| (PREDICTED: uncharacterized protein LOC104887584 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 203.4 bits (516), Expect = 2.500e-49
Identity = 98/134 (73.13%), Postives = 111/134 (82.84%), Query Frame = 1


		  
Query: 1   MAFRLGIQRNLQGNVDGCLHTVRRFTHAFALPPSFANSIDPISSPPSILPEDDSS--FSC 60
           MA R+GIQRN +   DG LHT RR THAFAL PSF NSIDPISSPP ILPE D+   FSC
Sbjct: 1   MALRVGIQRNFERKADGFLHTFRRLTHAFALSPSFTNSIDPISSPPLILPETDTETDFSC 60

Query: 61  EFPESAIGSGFMDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCGRVKLPHFYCCS 120
           +FP  + G G +DLMAVPKK++S++KRG+RNGPKALKPTPVIVRCK+CGRVKLPHFYCCS
Sbjct: 61  QFPGFSPGGGSLDLMAVPKKRVSRHKRGIRNGPKALKPTPVIVRCKACGRVKLPHFYCCS 120

Query: 121 GRVEDSGERSDAVN 133
           GR+ D GERSDA N
Sbjct: 121 GRM-DPGERSDATN 133

[Close]

BLAST of Spo17056.1 vs. NCBI nr
Match: gi|470122009|ref|XP_004297048.1| (PREDICTED: uncharacterized protein LOC101298011 [Fragaria vesca subsp. vesca])

HSP 1 Score: 139.0 bits (349), Expect = 5.800e-30
Identity = 71/128 (55.47%), Postives = 89/128 (69.53%), Query Frame = 1


		  
Query: 1   MAFRLGIQRNLQGNVDGCLHTVRRFTHAFALPPSFANSID-PISSPPSILPEDDSSFSCE 60
           MA ++ I R    N+  CL  +RR+TH  A+PPS   S+  PIS PP  LPE D+     
Sbjct: 1   MASKISILRTGTENI-ACLFGLRRWTHIAAIPPSSDGSLARPISPPPFALPEKDNRVGFG 60

Query: 61  FPESAIGSGFMDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCGRVKLPHFYCCSG 120
           FP    G G M+LMAVPK+K + +KRG+RNGPKALKP PVI+RC+SCGRVKLPH+YCCSG
Sbjct: 61  FPSFTFG-GSMELMAVPKRKTTPHKRGIRNGPKALKPVPVIIRCRSCGRVKLPHYYCCSG 120

Query: 121 RVEDSGER 128
              ++GER
Sbjct: 121 HRGNTGER 126

[Close]

BLAST of Spo17056.1 vs. NCBI nr
Match: gi|922479639|ref|XP_013637866.1| (PREDICTED: uncharacterized protein LOC106343247 isoform X2 [Brassica oleracea var. oleracea])

HSP 1 Score: 133.3 bits (334), Expect = 3.200e-28
Identity = 74/140 (52.86%), Postives = 91/140 (65.00%), Query Frame = 1


		  
Query: 1   MAFRLGIQRNLQGNVDGC-LHTVRRFTHAFALPPSFANSID-PISSPPSILPE------- 60
           MA RL   +  +  V+ C +   R F+H  A+PP F + ID PI +PP I PE       
Sbjct: 1   MALRLASLK--RAAVESCRIFETRSFSHVAAIPPPFNSVIDRPIVTPPLISPEFDENQSQ 60

Query: 61  ----DDSSFSCEFPESAIGSGFMDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCG 120
               D+ SF   FP  A  SG MDLMAVPKKK+SK+KRG+RNGPKALKP PVI+RC+SCG
Sbjct: 61  SGLIDEKSFGFGFPSFAF-SGSMDLMAVPKKKVSKHKRGIRNGPKALKPIPVIIRCRSCG 120

Query: 121 RVKLPHFYCCSGRVEDSGER 128
           RVKLPHF+CCSG   +  E+
Sbjct: 121 RVKLPHFFCCSGERVNPSEQ 137

[Close]

BLAST of Spo17056.1 vs. NCBI nr
Match: gi|923712018|ref|XP_013662734.1| (PREDICTED: uncharacterized protein LOC106367492 [Brassica napus])

HSP 1 Score: 133.3 bits (334), Expect = 3.200e-28
Identity = 74/140 (52.86%), Postives = 91/140 (65.00%), Query Frame = 1


		  
Query: 1   MAFRLGIQRNLQGNVDGC-LHTVRRFTHAFALPPSFANSID-PISSPPSILPE------- 60
           MA RL   +  +  V+ C +   R F+H  A+PP F + ID PI +PP I PE       
Sbjct: 1   MALRLASLK--RAAVESCRIFETRSFSHVAAMPPPFNSVIDRPIVTPPLISPEFDENQSQ 60

Query: 61  ----DDSSFSCEFPESAIGSGFMDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCG 120
               D+ SF   FP  A  SG MDLMAVPKKK+SK+KRG+RNGPKALKP PVI+RC+SCG
Sbjct: 61  SGLIDEKSFGFGFPSFAF-SGSMDLMAVPKKKVSKHKRGIRNGPKALKPIPVIIRCRSCG 120

Query: 121 RVKLPHFYCCSGRVEDSGER 128
           RVKLPHF+CCSG   +  E+
Sbjct: 121 RVKLPHFFCCSGERVNPSEQ 137

[Close]

BLAST of Spo17056.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RH65_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066860 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 2.800e-71
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1


		  
Query: 1   MAFRLGIQRNLQGNVDGCLHTVRRFTHAFALPPSFANSIDPISSPPSILPEDDSSFSCEF 60
           MAFRLGIQRNLQGNVDGCLHTVRRFTHAFALPPSFANSIDPISSPPSILPEDDSSFSCEF
Sbjct: 1   MAFRLGIQRNLQGNVDGCLHTVRRFTHAFALPPSFANSIDPISSPPSILPEDDSSFSCEF 60

Query: 61  PESAIGSGFMDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCGRVKLPHFYCCSGR 120
           PESAIGSGFMDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCGRVKLPHFYCCSGR
Sbjct: 61  PESAIGSGFMDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCGRVKLPHFYCCSGR 120

Query: 121 VEDSGERSDAVN 133
           VEDSGERSDAVN
Sbjct: 121 VEDSGERSDAVN 132

[Close]

BLAST of Spo17056.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CYK2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g042030 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.700e-49
Identity = 98/134 (73.13%), Postives = 111/134 (82.84%), Query Frame = 1


		  
Query: 1   MAFRLGIQRNLQGNVDGCLHTVRRFTHAFALPPSFANSIDPISSPPSILPEDDSS--FSC 60
           MA R+GIQRN +   DG LHT RR THAFAL PSF NSIDPISSPP ILPE D+   FSC
Sbjct: 1   MALRVGIQRNFERKADGFLHTFRRLTHAFALSPSFTNSIDPISSPPLILPETDTETDFSC 60

Query: 61  EFPESAIGSGFMDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCGRVKLPHFYCCS 120
           +FP  + G G +DLMAVPKK++S++KRG+RNGPKALKPTPVIVRCK+CGRVKLPHFYCCS
Sbjct: 61  QFPGFSPGGGSLDLMAVPKKRVSRHKRGIRNGPKALKPTPVIVRCKACGRVKLPHFYCCS 120

Query: 121 GRVEDSGERSDAVN 133
           GR+ D GERSDA N
Sbjct: 121 GRM-DPGERSDATN 133

[Close]

BLAST of Spo17056.1 vs. UniProtKB/TrEMBL
Match: A0A0D3CDF4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.200e-28
Identity = 74/140 (52.86%), Postives = 91/140 (65.00%), Query Frame = 1


		  
Query: 1   MAFRLGIQRNLQGNVDGC-LHTVRRFTHAFALPPSFANSID-PISSPPSILPE------- 60
           MA RL   +  +  V+ C +   R F+H  A+PP F + ID PI +PP I PE       
Sbjct: 1   MALRLASLK--RAAVESCRIFETRSFSHVAAIPPPFNSVIDRPIVTPPLISPEFDENQSQ 60

Query: 61  ----DDSSFSCEFPESAIGSGFMDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCG 120
               D+ SF   FP  A  SG MDLMAVPKKK+SK+KRG+RNGPKALKP PVI+RC+SCG
Sbjct: 61  SGLIDEKSFGFGFPSFAF-SGSMDLMAVPKKKVSKHKRGIRNGPKALKPIPVIIRCRSCG 120

Query: 121 RVKLPHFYCCSGRVEDSGER 128
           RVKLPHF+CCSG   +  E+
Sbjct: 121 RVKLPHFFCCSGERVNPSEQ 137

[Close]

BLAST of Spo17056.1 vs. UniProtKB/TrEMBL
Match: A0A078J659_BRANA (BnaCnng33200D protein OS=Brassica napus GN=BnaCnng33200D PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.200e-28
Identity = 74/140 (52.86%), Postives = 91/140 (65.00%), Query Frame = 1


		  
Query: 1   MAFRLGIQRNLQGNVDGC-LHTVRRFTHAFALPPSFANSID-PISSPPSILPE------- 60
           MA RL   +  +  V+ C +   R F+H  A+PP F + ID PI +PP I PE       
Sbjct: 1   MALRLASLK--RAAVESCRIFETRSFSHVAAMPPPFNSVIDRPIVTPPLISPEFDENQSQ 60

Query: 61  ----DDSSFSCEFPESAIGSGFMDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCG 120
               D+ SF   FP  A  SG MDLMAVPKKK+SK+KRG+RNGPKALKP PVI+RC+SCG
Sbjct: 61  SGLIDEKSFGFGFPSFAF-SGSMDLMAVPKKKVSKHKRGIRNGPKALKPIPVIIRCRSCG 120

Query: 121 RVKLPHFYCCSGRVEDSGER 128
           RVKLPHF+CCSG   +  E+
Sbjct: 121 RVKLPHFFCCSGERVNPSEQ 137

[Close]

BLAST of Spo17056.1 vs. UniProtKB/TrEMBL
Match: B9S906_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0837620 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.800e-28
Identity = 73/141 (51.77%), Postives = 95/141 (67.38%), Query Frame = 1


		  
Query: 1   MAFRLGIQRNLQGNVDGCLHTVRRFTHAFALPPSFANSIDPISSPPS-ILPE-----DDS 60
           MA RLG+ +   GN +G      R+TH  A+PP    SI+   +PP  +LPE     D+S
Sbjct: 1   MALRLGMLKAASGN-NGYTLGFLRWTHVAAMPPPLDGSINNAIAPPQMVLPEFNPNHDNS 60

Query: 61  SFSCE------FPESAIGSGFMDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCGR 120
           + S +      F  S    G MDLMAVPKKK+S++KRG+RNGPKALKPTPVI+RC+SCGR
Sbjct: 61  NSSYDNNLEFGFLPSFSFGGSMDLMAVPKKKVSRHKRGIRNGPKALKPTPVIIRCRSCGR 120

Query: 121 VKLPHFYCCSGRVEDSGERSD 130
           VKLPHFYCCSG   ++GE+++
Sbjct: 121 VKLPHFYCCSGERGNAGEQNN 140

[Close]

BLAST of Spo17056.1 vs. TAIR (Arabidopsis)
Match: AT1G26740.1 (Ribosomal L32p protein family)

HSP 1 Score: 120.2 bits (300), Expect = 9.800e-28
Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = 1


		  
Query: 15  VDGC-LHTVRRFTHAFALPPSFANSID-PISSPPSILPE---------DDSSFSCEFPES 74
           V+ C +   R  +H  A+P     + D PIS PP +LPE         ++ SF    P  
Sbjct: 13  VESCRILETRSLSHVAAMPSPLNGAFDRPISMPPLVLPEFDQNQPGLIEEKSFGFGLPSF 72

Query: 75  AIGSGFMDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCGRVKLPHFYCCSG 120
           A  +G M+LMAVPKKKISK+KRG+RNGPKALKP PVI+RC+SCGRVKLPHF+CCSG
Sbjct: 73  AF-NGSMELMAVPKKKISKHKRGIRNGPKALKPVPVIIRCRSCGRVKLPHFFCCSG 127

[Close]

BLAST of Spo17056.1 vs. TAIR (Arabidopsis)
Match: AT1G69485.1 (Ribosomal L32p protein family)

HSP 1 Score: 106.3 bits (264), Expect = 1.500e-23
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 1


		  
Query: 70  MDLMAVPKKKISKYKRGLRNGPKALKPTPVIVRCKSCGRVKLPHFYCCSGRVEDSGERSD 129
           M+LMAVPKKKISK+KRG+RNGPKA KPTPVI+RC+SCGRVKLPHFYCCSG      E+S+
Sbjct: 1   MELMAVPKKKISKHKRGIRNGPKAFKPTPVIIRCRSCGRVKLPHFYCCSGERAIPDEQSN 60

Query: 130 AVN 133
           + N
Sbjct: 61  SNN 63

The following BLAST results are available for this feature:

BLAST of Spo17056.1 vs. NCBI nr
BLAST of Spo17056.1 vs. UniProtKB/TrEMBL
BLAST of Spo17056.1 vs. ExPASy Swiss-Prot
BLAST of Spo17056.1 vs. TAIR (Arabidopsis)

BLAST of Spo17056.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902221200\|gb\|KNA18820.1\|	4.0e-71	100.	hypothetical protein SOVF_0668...	[more]
gi\|731319956\|ref\|XP_010670547.1\|	2.5e-49	73.1	PREDICTED: uncharacterized pro...	[more]
gi\|470122009\|ref\|XP_004297048.1\|	5.8e-30	55.4	PREDICTED: uncharacterized pro...	[more]
gi\|922479639\|ref\|XP_013637866.1\|	3.2e-28	52.8	PREDICTED: uncharacterized pro...	[more]
gi\|923712018\|ref\|XP_013662734.1\|	3.2e-28	52.8	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo17056.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RH65_SPIOL	2.8e-71	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CYK2_BETVU	1.7e-49	73.1	Uncharacterized protein OS=Bet...	[more]
A0A0D3CDF4_BRAOL	2.2e-28	52.8	Uncharacterized protein OS=Bra...	[more]
A0A078J659_BRANA	2.2e-28	52.8	BnaCnng33200D protein OS=Brass...	[more]
B9S906_RICCO	3.8e-28	51.7	Putative uncharacterized prote...	[more]

BLAST of Spo17056.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo17056.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G26740.1	9.8e-28	54.3	Ribosomal L32p protein family	[more]
AT1G69485.1	1.5e-23	74.6	Ribosomal L32p protein family	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002677	Ribosomal protein L32p	PFAM	PF01783	Ribosomal_L32p	coord: 74..119 score: 9.0
IPR002677	Ribosomal protein L32p	TIGRFAMs	TIGR01031	TIGR01031	coord: 74..116 score: 4.
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 72..118 score: 2.32
None	No IPR available	PANTHER	PTHR21026	39S RIBOSOMAL PROTEIN L32, MITOCHONDRIAL	coord: 1..119 score: 2.7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0010239	chloroplast mRNA processing
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0009501	amyloplast
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009509	chromoplast
cellular_component	GO:0009513	etioplast
cellular_component	GO:0009537	proplastid
molecular_function	GO:0003735	structural constituent of ribosome

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo18887	0.72	Barchart \| Table
Spo06775	0.67	Barchart \| Table
Spo05841	0.66	Barchart \| Table
Spo25773	0.66	Barchart \| Table