Spo17109 (gene)

Overview
NameSpo17109
Typegene
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S19
Locationchr1 : 8910958 .. 8914022 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAGGCGGGTGATAGACTTTTTGCCAGGATCCGGCCTGATCCATATGATACCATAAGGTCCATAGCAAAACCCAATGAATGTGTCTTATTTAAAAACCCAAAACAAAACCCTAAAATCGACTCCTTTGCCAACAACATTCGCCCCCTCACTTCTTCTGCAGCAGCTGAGAGAGAGAAAGAGAGAACAACAATGGAGGGTGGGAAAACAGTGAAAGATGTGTCTCCTCACGATTTCGTCAAAGCTTATGCTGCTCATCTTAAGCGCTCCGGCAAGGTTTCCCTCTTTCTCTTTTATCTTTTCGATTTCATGTTTTGTGATTGAATGATGTTAATATTGTACTTTATGATTAGGTTTTTGTTTGGGCATGTATATTTGCACATCACTTATTTTTACGAATTTTCCCCATTTTTTTTGTCATTAAGATTTTAGGGTTTCTATAGATTTATGTTTGACAAATTTGAATTTTTTAATCGAGTTTTCTGCCCTTTTTAGTGTTAGTAGCTGCAGTTTGAACTAGTTTGGATTAAACTGAGTGACAATGGGATGGAAATGGGTATTGTGCTGTAGAGTGAAGTTTAGAAAATCTAATTTCTGTAGTTTAGACCTAACACTTGGATAAAATAAGGGGGCGGCGGTGCTTTAATGAAGGCCAGTTTATTGATTTTCGTTGCTGTTTTCTTTCTTGATCTAATACGATAGAATGGCAAAAGATAATATTGCTAATTAGATGACTTTATTTGCAATTCAATTAAGGCAGAATTCATGATTTTGGTTAATGCATCTATTTGTTGGTCTTTTATTAAAGAAATAGTATGAGATGCTTGTGTTGTTTGTGTGTTTGGCCCTATTAACAATTGTAGACAAGAGAAGGGAGAATTATTGATTTTGGTTAGTGCATCTTTTTGTTGATCTTATATGTAAGAGTGATAAAGATGTTAGTTTTGTTTATGAGATGGCCCTAGTTGCAAGCTTTGACCCGAAGCTAGATTTTGATTTACCGTTTATTTGTTCTGCTATGTGCTCTGTAGATGGAGTTGCCTCACTGGACTGACATTGTCAAGACTGGTAAGCTCAAGGAACTCGCTCCATACGACCCTGACTGGTATTACACCAGAGCTGGTAAGTGCAGATTTTTCCTGGAAAGCTTTATTTGCTTGTCCACTTTAGTAATAAACTTTGTTGAATCTATGGTTCCTTTCTGTTTCATCTTTGCATATTTTTGTCAAGCAAACGTAGATTTTTGTCAGTTTCTTGGATAGGCTATTGTAGCACTAAAGGTTGGGGTTTTTTTTTTTTTTTAAACTTTTTTTTGTTTATGTGATAATTTTGTTGATCACTGTTACTTGTTCATTTCTAGTAAAGAGATGGCATTATAATAATGAATGTATATCTTTTTATTGTGTTTCTTTGTGAATGGATATCTTAATAAAGAAAACAAGGGGAGATAGTGACTGGATGGATTTCTTTGTATTCAGATTTTGACACAAAATCCTTATTTAAAGATTTCATGGTGCATTTAGGTCTTCATGTTCGAATTTCTATTCTATGGGGTTGCACATAGTTTCAAAAGCTTATTTTTCTGCTTGTAAGTGATGAAAATCGTCGAGTTATGAGAGTATGATAGCCTGAGAGGTGTTGTGAAGTAGTAGGTTGTGAGTATCTTGTAGTACTGTGGTAGTAGATTATTTTTGATGTTGGGCTTTGTGGTTTTGTCGACTATTGAAGATATTCCAGGTTAAGTGAAAATTGCTTTCACCCTGCTTTTCGTTTCCTCTTAAACTACCTGAAAAATCTATGGGTTAGTGCAATAGGATTGTGTAATGCTGTGCATGCTATTTCTCACATCTGCTTGAACTTTGGATTGTACTTTTGTCTGTTTTTCGGTAGTTGATTAATGTTCATTCCTTTTGGCAGCTTCTATGGCAAGGAAGATCTACTTGAGGGGTGGACTTGGAGTTGGTGGCTTTAGGAGGATTTATGGAGGAAACCAGAGAAATGGTAGTCGCCCTCGTCACTTCTGCAAGAGCAGTGGTTCTGTTGCCCGTCACATTTTGCAGCAATTAGAGGCAGTGAAAATTGTTGAAATTGATCCTAAAGGGTAAGCACCAAGGCCTTTAATTTGCATTGCCAGTTGTTATACAATCACTTGTTATCGCTGCCTTTATTTTGAACTCCGATATTCACAACAAGGAGCTTAATGAGCCAGTGTTTCTAGCTCGCAATGGGTAGTAATGTGTTGAAGAGTCTACTGACATTTGCATGTATGTTGTATTCAGGGGAAGGAAGATCACATCAAGCGGCCAACGAGATCTTGACCAAGTTGCTGGCAGAATTGGTGTTGAGGTGTAAGAATGCTGGTTTGCATCAGTCATTCGTTATAAGTCTAATGAAAACTAGTCGTAGAGGAACGTAAATCAAATTTCATCTTTTTGTGGCCTGTGTTGAATTTTGTTAGTTTTGCGATGATGTGCTAGTTGTCGGAGATTATTTTCGCTACGGACACACATGGTTATGAATCTTAATTTTATGAAATACATCTACTTGATTTCTGTCTTTGTTGTGGCTTTTGTTTGTTGAACTTGTAACCATGCCAGTCTCTATGATAGTAGCCGCAGTGGTGGGAAATTGGTTCATGTGACTGACAGACAACCCTCATCTTCATGATCAACAATTGCATGTTTGCAATGCGGAGAGAATGACAGTGAATGTGAAAATAGTGTCTTTTGCCTGAAACTCAGCTCCAGAATCACTCTAGTTTGGTTGACACTGTGTGGAGTTGATACATGGGAAGTTTAATTTCCTAGGAAGTGAACAGCAAAGAAGGCTGTCAAAAAAAAAAGAACAGCAAAGAAGTTGTTTGGTTGTCATGTGCACAGAAAGTGAACTTCTTAGGAATTTCTACTTCCCAAAAAGGGGAAGTTGCTTTTCATGGGAATTCTAATTGTCTATGTTTAACCAAACAAGAATACTCAATTCATAGGAAGTTAAAATTTACGGGAATTGTATTAATTTACGGGAATTGCAAATACAAGGAAAATTTAACTTTCCAAGTACCACCA

mRNA sequence

ATGAACAAGGCGGGTGATAGACTTTTTGCCAGGATCCGGCCTGATCCATATGATACCATAAGGTCCATAGCAAAACCCAATGAATGTGTCTTATTTAAAAACCCAAAACAAAACCCTAAAATCGACTCCTTTGCCAACAACATTCGCCCCCTCACTTCTTCTGCAGCAGCTGAGAGAGAGAAAGAGAGAACAACAATGGAGGGTGGGAAAACAGTGAAAGATGTGTCTCCTCACGATTTCGTCAAAGCTTATGCTGCTCATCTTAAGCGCTCCGGCAAGATGGAGTTGCCTCACTGGACTGACATTGTCAAGACTGGTAAGCTCAAGGAACTCGCTCCATACGACCCTGACTGGTATTACACCAGAGCTGCTTCTATGGCAAGGAAGATCTACTTGAGGGGTGGACTTGGAGTTGGTGGCTTTAGGAGGATTTATGGAGGAAACCAGAGAAATGGTAGTCGCCCTCGTCACTTCTGCAAGAGCAGTGGTTCTGTTGCCCGTCACATTTTGCAGCAATTAGAGGCAGTGAAAATTGTTGAAATTGATCCTAAAGGGGGAAGGAAGATCACATCAAGCGGCCAACGAGATCTTGACCAAGTTGCTGGCAGAATTGGTGTTGAGGTGTAAGAATGCTGGTTTGCATCAGTCATTCGTTATAAGTCTAATGAAAACTAGTCGTAGAGGAACGTAAATCAAATTTCATCTTTTTGTGGCCTGTGTTGAATTTTGTTAGTTTTGCGATGATGTGCTAGTTGTCGGAGATTATTTTCGCTACGGACACACATGGTTATGAATCTTAATTTTATGAAATACATCTACTTGATTTCTGTCTTTGTTGTGGCTTTTGTTTGTTGAACTTGTAACCATGCCAGTCTCTATGATAGTAGCCGCAGTGGTGGGAAATTGGTTCATGTGACTGACAGACAACCCTCATCTTCATGATCAACAATTGCATGTTTGCAATGCGGAGAGAATGACAGTGAATGTGAAAATAGTGTCTTTTGCCTGAAACTCAGCTCCAGAATCACTCTAGTTTGGTTGACACTGTGTGGAGTTGATACATGGGAAGTTTAATTTCCTAGGAAGTGAACAGCAAAGAAGGCTGTCAAAAAAAAAAGAACAGCAAAGAAGTTGTTTGGTTGTCATGTGCACAGAAAGTGAACTTCTTAGGAATTTCTACTTCCCAAAAAGGGGAAGTTGCTTTTCATGGGAATTCTAATTGTCTATGTTTAACCAAACAAGAATACTCAATTCATAGGAAGTTAAAATTTACGGGAATTGTATTAATTTACGGGAATTGCAAATACAAGGAAAATTTAACTTTCCAAGTACCACCA

Coding sequence (CDS)

ATGAACAAGGCGGGTGATAGACTTTTTGCCAGGATCCGGCCTGATCCATATGATACCATAAGGTCCATAGCAAAACCCAATGAATGTGTCTTATTTAAAAACCCAAAACAAAACCCTAAAATCGACTCCTTTGCCAACAACATTCGCCCCCTCACTTCTTCTGCAGCAGCTGAGAGAGAGAAAGAGAGAACAACAATGGAGGGTGGGAAAACAGTGAAAGATGTGTCTCCTCACGATTTCGTCAAAGCTTATGCTGCTCATCTTAAGCGCTCCGGCAAGATGGAGTTGCCTCACTGGACTGACATTGTCAAGACTGGTAAGCTCAAGGAACTCGCTCCATACGACCCTGACTGGTATTACACCAGAGCTGCTTCTATGGCAAGGAAGATCTACTTGAGGGGTGGACTTGGAGTTGGTGGCTTTAGGAGGATTTATGGAGGAAACCAGAGAAATGGTAGTCGCCCTCGTCACTTCTGCAAGAGCAGTGGTTCTGTTGCCCGTCACATTTTGCAGCAATTAGAGGCAGTGAAAATTGTTGAAATTGATCCTAAAGGGGGAAGGAAGATCACATCAAGCGGCCAACGAGATCTTGACCAAGTTGCTGGCAGAATTGGTGTTGAGGTGTAA

Protein sequence

MNKAGDRLFARIRPDPYDTIRSIAKPNECVLFKNPKQNPKIDSFANNIRPLTSSAAAEREKERTTMEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAASMARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKGGRKITSSGQRDLDQVAGRIGVEV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo17109.1Spo17109.1mRNA


Homology
[Close]
BLAST of Spo17109.1 vs. NCBI nr
Match: gi|902175838|gb|KNA08672.1| (hypothetical protein SOVF_160510 [Spinacia oleracea])

HSP 1 Score: 295.4 bits (755), Expect = 7.600e-77
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 

		  

Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS
Sbjct: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG
Sbjct: 61  MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVEV 209
           GRKITSSGQRDLDQVAGRIGVEV
Sbjct: 121 GRKITSSGQRDLDQVAGRIGVEV 143
[Close]
BLAST of Spo17109.1 vs. NCBI nr
Match: gi|902212504|gb|KNA16999.1| (hypothetical protein SOVF_083970 [Spinacia oleracea])

HSP 1 Score: 280.4 bits (716), Expect = 2.500e-72
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 1 

		  

Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYD DWYY RAAS
Sbjct: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARK+YLRGGLGVGGFRRIYGG++RNGSRP HFCKSSG+VARHILQQLE VKIVEIDPKG
Sbjct: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPPHFCKSSGAVARHILQQLEQVKIVEIDPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVEV 209
           GRKITSSGQRDLDQVAGRIGVEV
Sbjct: 121 GRKITSSGQRDLDQVAGRIGVEV 143
[Close]
BLAST of Spo17109.1 vs. NCBI nr
Match: gi|731334810|ref|XP_010678410.1| (PREDICTED: 40S ribosomal protein S19-1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 261.2 bits (666), Expect = 1.600e-66
Identity = 126/141 (89.36%), Postives = 133/141 (94.33%), Query Frame = 1 

		  

Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           M   +TVKDVSPHDFVK+YA+HLKRSGKMELP WTDIVKTGKLK+LAPYDPDWYY RAAS
Sbjct: 1   MAPSRTVKDVSPHDFVKSYASHLKRSGKMELPQWTDIVKTGKLKQLAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGGLGVGGFRRIYGG++RNGSRP HFCKSSGSVARHILQQLE+VKIVEIDPKG
Sbjct: 61  MARKIYLRGGLGVGGFRRIYGGSKRNGSRPPHFCKSSGSVARHILQQLESVKIVEIDPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGV 207
           GRKITSSGQRDLDQVA  IGV
Sbjct: 121 GRKITSSGQRDLDQVACTIGV 141
[Close]
BLAST of Spo17109.1 vs. NCBI nr
Match: gi|460413795|ref|XP_004252264.1| (PREDICTED: 40S ribosomal protein S19-3 [Solanum lycopersicum])

HSP 1 Score: 260.8 bits (665), Expect = 2.100e-66
Identity = 123/141 (87.23%), Postives = 132/141 (93.62%), Query Frame = 1 

		  

Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           ME  ++VKDVSPHDFVKAYAAHLKRSGKMELP WTDIVKTGKLKELAPYD DWYY RAAS
Sbjct: 1   MEAARSVKDVSPHDFVKAYAAHLKRSGKMELPEWTDIVKTGKLKELAPYDADWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGG+GVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQL+ + I++ +PKG
Sbjct: 61  MARKIYLRGGIGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLQNMNIIDFEPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGV 207
           GR+ITSSGQRDLDQVAGRI V
Sbjct: 121 GRRITSSGQRDLDQVAGRIAV 141
[Close]
BLAST of Spo17109.1 vs. NCBI nr
Match: gi|697152085|ref|XP_009630276.1| (PREDICTED: 40S ribosomal protein S19-3-like [Nicotiana tomentosiformis])

HSP 1 Score: 260.4 bits (664), Expect = 2.700e-66
Identity = 123/143 (86.01%), Postives = 133/143 (93.01%), Query Frame = 1 

		  

Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           ME  + VKDVSPH+FVKAYAAHLKRSGKMELP WTDIVKTGKLKELAPYDPDWYY RAAS
Sbjct: 1   MEPARNVKDVSPHEFVKAYAAHLKRSGKMELPEWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVAR+ILQQL+ + I++ DPKG
Sbjct: 61  MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARNILQQLQNMNIIDFDPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVEV 209
           GR+ITS+GQRDLDQVAGRI V +
Sbjct: 121 GRRITSNGQRDLDQVAGRIAVAI 143
[Close]
BLAST of Spo17109.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QN50_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_160510 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 5.300e-77
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 

		  

Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS
Sbjct: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG
Sbjct: 61  MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVEV 209
           GRKITSSGQRDLDQVAGRIGVEV
Sbjct: 121 GRKITSSGQRDLDQVAGRIGVEV 143
[Close]
BLAST of Spo17109.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RDC9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_083970 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.800e-72
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 1 

		  

Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYD DWYY RAAS
Sbjct: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARK+YLRGGLGVGGFRRIYGG++RNGSRP HFCKSSG+VARHILQQLE VKIVEIDPKG
Sbjct: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPPHFCKSSGAVARHILQQLEQVKIVEIDPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVEV 209
           GRKITSSGQRDLDQVAGRIGVEV
Sbjct: 121 GRKITSSGQRDLDQVAGRIGVEV 143
[Close]
BLAST of Spo17109.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CAT1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g113800 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.100e-66
Identity = 126/141 (89.36%), Postives = 133/141 (94.33%), Query Frame = 1 

		  

Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           M   +TVKDVSPHDFVK+YA+HLKRSGKMELP WTDIVKTGKLK+LAPYDPDWYY RAAS
Sbjct: 1   MAPSRTVKDVSPHDFVKSYASHLKRSGKMELPQWTDIVKTGKLKQLAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGGLGVGGFRRIYGG++RNGSRP HFCKSSGSVARHILQQLE+VKIVEIDPKG
Sbjct: 61  MARKIYLRGGLGVGGFRRIYGGSKRNGSRPPHFCKSSGSVARHILQQLESVKIVEIDPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGV 207
           GRKITSSGQRDLDQVA  IGV
Sbjct: 121 GRKITSSGQRDLDQVACTIGV 141
[Close]
BLAST of Spo17109.1 vs. UniProtKB/TrEMBL
Match: M1BB68_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015992 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.400e-66
Identity = 123/141 (87.23%), Postives = 132/141 (93.62%), Query Frame = 1 

		  

Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           ME  ++VKDVSPHDFVKAYAAHLKRSGKMELP WTDIVKTGKLKELAPYD DWYY RAAS
Sbjct: 1   MEAARSVKDVSPHDFVKAYAAHLKRSGKMELPEWTDIVKTGKLKELAPYDADWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGG+GVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQL+ + I++ +PKG
Sbjct: 61  MARKIYLRGGIGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLQNMNIIDFEPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGV 207
           GR+ITSSGQRDLDQVAGRI V
Sbjct: 121 GRRITSSGQRDLDQVAGRIAV 141
[Close]
BLAST of Spo17109.1 vs. UniProtKB/TrEMBL
Match: K4DEQ8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.400e-66
Identity = 123/141 (87.23%), Postives = 132/141 (93.62%), Query Frame = 1 

		  

Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           ME  ++VKDVSPHDFVKAYAAHLKRSGKMELP WTDIVKTGKLKELAPYD DWYY RAAS
Sbjct: 1   MEAARSVKDVSPHDFVKAYAAHLKRSGKMELPEWTDIVKTGKLKELAPYDADWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGG+GVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQL+ + I++ +PKG
Sbjct: 61  MARKIYLRGGIGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLQNMNIIDFEPKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGV 207
           GR+ITSSGQRDLDQVAGRI V
Sbjct: 121 GRRITSSGQRDLDQVAGRIAV 141
[Close]
BLAST of Spo17109.1 vs. ExPASy Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.900e-67
Identity = 122/142 (85.92%), Postives = 131/142 (92.25%), Query Frame = 1 

		  

Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTGKLKELAPYDPDWYY RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARK+YLRGGLGVG FRRIYGG++RNGSRP HFCKSSG +ARHILQQLE + IVE+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVE 208
           GR+ITSSGQRDLDQVAGRI VE
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVE 142
[Close]
BLAST of Spo17109.1 vs. ExPASy Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.200e-66
Identity = 121/142 (85.21%), Postives = 130/142 (91.55%), Query Frame = 1 

		  

Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTG+LKELAPYDPDWYY RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGGLGVG FRRIYGG++RNGSRP HFCKSSG +ARHILQQLE + IVE+D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVE 208
           GR+ITSSGQRDLDQVAGRI  E
Sbjct: 121 GRRITSSGQRDLDQVAGRIAAE 142
[Close]
BLAST of Spo17109.1 vs. ExPASy Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.700e-66
Identity = 121/143 (84.62%), Postives = 130/143 (90.91%), Query Frame = 1 

		  

Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           M  GKTVKDVSPH+FVKAYAAHLKRSGK+ELP WTDIVKTGKLKELAPYDPDWYY RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARK+YLRGGLGVG FRRIYGG++RNGSRP HFCKSSG VARHILQQL+ + IV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVEV 209
           GRKITSSGQRDLDQVAGRI   V
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAAV 143
[Close]
BLAST of Spo17109.1 vs. ExPASy Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=2 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.100e-59
Identity = 104/139 (74.82%), Postives = 125/139 (89.93%), Query Frame = 1 

		  

Query: 70  KTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAASMARK 129
           +TVKDV+PH+FVKAY+AHLKRSGKMELP W DIVKT + KEL PYDPDWYYTRAAS+ARK
Sbjct: 7   RTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARK 66

Query: 130 IYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKGGRKI 189
           IYLR G+GVGGF++IYGG QRNGSRP HFCKSSG+++R+ILQQL+ + I+++DPKGGR I
Sbjct: 67  IYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLI 126

Query: 190 TSSGQRDLDQVAGRIGVEV 209
           TS G+RDLDQVAGR+ V +
Sbjct: 127 TSQGRRDLDQVAGRVDVTI 145
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BLAST of Spo17109.1 vs. ExPASy Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.400e-46
Identity = 80/136 (58.82%), Postives = 109/136 (80.15%), Query Frame = 1 

		  

Query: 69  GKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAASMAR 128
           G +VKDVS H+F +A+AA LK+SGKM++P WTD VKTG  KEL+PY+PDWY+ RAAS+ R
Sbjct: 2   GISVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICR 61

Query: 129 KIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKGGRK 188
            +Y+R   G+G F +IYGG +R G+ P HFCK++GS++R +LQ LE +KIVE DP GGR+
Sbjct: 62  HLYIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRR 121

Query: 189 ITSSGQRDLDQVAGRI 205
           +TS G+RDLD++A +I
Sbjct: 122 LTSQGRRDLDRIAAQI 137
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BLAST of Spo17109.1 vs. TAIR (Arabidopsis)
Match: AT3G02080.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 256.9 bits (655), Expect = 1.100e-68
Identity = 122/142 (85.92%), Postives = 131/142 (92.25%), Query Frame = 1 

		  

Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTGKLKELAPYDPDWYY RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARK+YLRGGLGVG FRRIYGG++RNGSRP HFCKSSG +ARHILQQLE + IVE+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVE 208
           GR+ITSSGQRDLDQVAGRI VE
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVE 142
[Close]
BLAST of Spo17109.1 vs. TAIR (Arabidopsis)
Match: AT5G15520.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 254.2 bits (648), Expect = 6.900e-68
Identity = 121/142 (85.21%), Postives = 130/142 (91.55%), Query Frame = 1 

		  

Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTG+LKELAPYDPDWYY RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARKIYLRGGLGVG FRRIYGG++RNGSRP HFCKSSG +ARHILQQLE + IVE+D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVE 208
           GR+ITSSGQRDLDQVAGRI  E
Sbjct: 121 GRRITSSGQRDLDQVAGRIAAE 142
[Close]
BLAST of Spo17109.1 vs. TAIR (Arabidopsis)
Match: AT5G61170.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 253.1 bits (645), Expect = 1.500e-67
Identity = 121/143 (84.62%), Postives = 130/143 (90.91%), Query Frame = 1 

		  

Query: 66  MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 125
           M  GKTVKDVSPH+FVKAYAAHLKRSGK+ELP WTDIVKTGKLKELAPYDPDWYY RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 126 MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 185
           MARK+YLRGGLGVG FRRIYGG++RNGSRP HFCKSSG VARHILQQL+ + IV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 186 GRKITSSGQRDLDQVAGRIGVEV 209
           GRKITSSGQRDLDQVAGRI   V
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAAV 143
The following BLAST results are available for this feature:
BLAST of Spo17109.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902175838|gb|KNA08672.1|7.6e-77100.hypothetical protein SOVF_1605... [more]
gi|902212504|gb|KNA16999.1|2.5e-7294.4hypothetical protein SOVF_0839... [more]
gi|731334810|ref|XP_010678410.1|1.6e-6689.3PREDICTED: 40S ribosomal prote... [more]
gi|460413795|ref|XP_004252264.1|2.1e-6687.2PREDICTED: 40S ribosomal prote... [more]
gi|697152085|ref|XP_009630276.1|2.7e-6686.0PREDICTED: 40S ribosomal prote... [more]
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BLAST of Spo17109.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QN50_SPIOL5.3e-77100.Uncharacterized protein OS=Spi... [more]
A0A0K9RDC9_SPIOL1.8e-7294.4Uncharacterized protein OS=Spi... [more]
A0A0J8CAT1_BETVU1.1e-6689.3Uncharacterized protein OS=Bet... [more]
M1BB68_SOLTU1.4e-6687.2Uncharacterized protein OS=Sol... [more]
K4DEQ8_SOLLC1.4e-6687.2Uncharacterized protein OS=Sol... [more]
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BLAST of Spo17109.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS191_ARATH1.9e-6785.940S ribosomal protein S19-1 OS... [more]
RS192_ARATH1.2e-6685.240S ribosomal protein S19-2 OS... [more]
RS193_ARATH2.7e-6684.640S ribosomal protein S19-3 OS... [more]
RS19_ORYSJ1.1e-5974.840S ribosomal protein S19 OS=O... [more]
RS19_MYAAR2.4e-4658.840S ribosomal protein S19 OS=M... [more]
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BLAST of Spo17109.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT3G02080.11.1e-6885.9Ribosomal protein S19e family ... [more]
AT5G15520.16.9e-6885.2Ribosomal protein S19e family ... [more]
AT5G61170.11.5e-6784.6Ribosomal protein S19e family ... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001266Ribosomal protein S19ePRODOMPD003854coord: 69..185
score: 3.0
IPR001266Ribosomal protein S19ePANTHERPTHR1171040S RIBOSOMAL PROTEIN S19coord: 63..208
score: 5.4
IPR001266Ribosomal protein S19ePFAMPF01090Ribosomal_S19ecoord: 71..204
score: 1.4
IPR001266Ribosomal protein S19eSMARTSM01413Ribosomal_S19e_2coord: 71..207
score: 1.1
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 163..204
score: 1.
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 71..206
score: 2.31
IPR018277Ribosomal protein S19e, conserved sitePROSITEPS00628RIBOSOMAL_S19Ecoord: 155..174
scor

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0006228 UTP biosynthetic process
biological_process GO:0006544 glycine metabolic process
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0006412 translation
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009088 threonine biosynthetic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0006414 translational elongation
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0009099 valine biosynthetic process
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0034968 histone lysine methylation
biological_process GO:0009585 red, far-red light phototransduction
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0001510 RNA methylation
biological_process GO:0006165 nucleoside diphosphate phosphorylation
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0016567 protein ubiquitination
biological_process GO:0009909 regulation of flower development
biological_process GO:0006241 CTP biosynthetic process
biological_process GO:0006183 GTP biosynthetic process
cellular_component GO:0005618 cell wall
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0031429 box H/ACA snoRNP complex
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0016020 membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005634 nucleus
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0005730 nucleolus
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004550 nucleoside diphosphate kinase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003862 3-isopropylmalate dehydrogenase activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004073 aspartate-semialdehyde dehydrogenase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0050661 NADP binding
RNA-Seq Expression