Spo17166 (gene)

Overview
NameSpo17166
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionGRIP and coiled-coil domain-containing protein 2, putative isoform 2
Locationchr5 : 40946657 .. 40952230 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGGCCGAACTTCAGAGGTGTTCGGCCGAACTAAAGCAGGACAGCTTGAAGAATTAAGCCCAGAGTTCGGCCGAACTCTCACAAAAGTTCGGCCGAACTTACATATGTTCGGCCGAACCTCCCCTATTGTTCGACCGAACATCGCAATCAGTAGCTCCTGTTTCTTCCCAGGTTCAGCCGAACCTGCATTATGTTCGGCCGAACTTGCCTCTTAGTTCGGCCGAACTTCATCTATGTTCGGCCGAACCTGCTGCCAGCGCTGAGCCACTTTTCGGGACTATTTAAAGCATTTTAGGAGCTTTTAGAAAACCTAGTTTTTACAAAAGTAGTCTGAAATTAATTTTAGAGAGAGAAAGGAGGAGAACTTCATTCATTGCTCATTGTATTGCTTGGGATTCTCCCTAATCTTGGATTTTGAAGCTTCATTGTAAAATTTCTCAACTCTTATTTCTATTTAATGTCATTAATTTCTGGTTTTTCTTATTTTGTCTTTTATTTTTCTCATTAATCAAAAACCCCAAAAATAGGCACTTTTATATTTTTCCTTCCTACTTGTTTGATTGTTTAGTTTTTCCTAATCCTTTATGATTAGACTTATTAGTTTCCTTGCTAATCTCTTGAGATTTGTGATTTTGATTGTATTGTGGATGATGGTTTTGCCTATAGATTTGTTTCCCATGATGAAACTAGCTTGAACTCTTTGGTTAGGGATTTTTGCTTTGATTATTCGGAAATGCATACTTCCATTGAATTCATCATGTTGAAATTTGTAGTCAAGTCCATGAGTGAGTAGTTCTCATCTAGGGGTTTGGGTGTAGCCTAGGGTTTTCATGTGTGGGGTTTTAAGGTAGGATTTGCTAGTTTTGCAATTAAATGCATAAGTTGGGGGGTCCTCGTTGCTTGCTTGGTTAGACGTAATCTTGCTTGGTCAATGGAACGCGATGCATTGATTTGGCAAGGGGTTGTAAGTCATTGCATTGTATGATTTCGATTGGATTTATTTTGATTAGTTCTTAGGCTTTGGGTTGATTGCGGAAGCATGATTCGTTGCTTGAGGATTTTAAAGATCGATTCCCCTTTCAATTTGTCTTTGCAAGTTTAGTTAATCCCCAAATCCTTATTTCCCCCATTGCATGTATCCCTTGGTGAATCCCAATTCCCTAGTGTTTTTAATCCTTGTTTAACTTTTTAATCGCTTAGTTTGAATTTTCTTTCTTTTTCAACAACCAATCCCTTTTCGAATTAGCTTATGTTAGCATTTCTAGCTACGGAACTCGCAATTCCCTGTGGATATCGACCCTTTGCTTGCCACTCTACTTGATTCTTGTGGTTAGTTTAGGTATTTAAGTTGATTTAGGTGTAAGACTAGTAACGACCTAGTTTTTCCCTTTATCAAATATCCGAAAATAACCCGACTCGAGTTAACCCGATAAACGAAAGTTCGACCTAGTTTTTTTTAAAAAATCTGATTTAACCCGAATCCTATTCAATTACTCGTCATTAATCCAACACAAGTTAACCGAATTGACCTATTAACTATATATGTAAATCCAACTCGATACATGAAGATTTATTCTATGTTCTATTTATATTAAATAATAAGGAGACAAATTAATAAAAATCTAAAAATCTTTATTTGGCATGAACTAATAGAATAATAAAGTGATACTTCGTATGAGTTTATCGCAAACTTGAGTGTCACTCGATTAATAGAACACACGATTACAAACTTAAATTTATTTAAACTTGAACCTCAAACCCAATCCATAATTGACCCGAATCCGAGATACGTCTTATCCGAACTTGACCAGATTCCGAGACTCACCGACCCATACTTGACCCGAATATGAAATTTAGGCTATCCGGACATGACCCATACCTGAAGTAATCCAATCAAATTTTACCCAAATCCGAAATACACCCAAACCGAACTCAATCCCAACAAAATCCAACCGATTTAAAACAGTTATAAACCCGAACAAATTCTAACCGAACCCGAGATTGACCCGAGCCAAGGTTACCCGATCCGAAACCGAGTTCAATCCGAAACAATTTATCACCCGATCTCACCCTAATCAAAGTTATCCGAATCGATTCGAATCGACCCGAATAGAATTATTGATCCGACACGTCTCACAAAATCTTCCCTCTTTACTCTCAATTACATCTGAAAATGACTTTGCGAAGATGATGCTCCTATCCTTTAATTTTTCTATATCCGATATTTCAATGTATACCGGACTCGATAACCCAATTTTACGTCTCTTGAAGGACAACTAATAGTACACCAGGAAGAAGCTCGTGAAGCCTCTGGGATCGCTGAGTCAAGAAAATCTGAAGTTACTTGCTTCCGTACTTCATTTCCATTTTTATTAACTCCTACTTGCTGCGCACTGTCTAGACGACAAAAAAATCTATCGAAGAGGCTGGAGACCTTGGATTGGAAGCTGGAAGAGCAGAAAGAGATCTCTGGTCAGATACATGATGATGTATGTATGTCTAATCGAATTATTTCATTCAGTAATGTAGCTTAATCATCTGTTTTCTTCTACTTTATTATATGGTCTATAAATGTGTCAAGGTTAAGCATTAGAGATACATTTTACTTGCTGCTATCATGGCTCCATAGTTCATATATTTATCCAATTCAACTAGGTATTACATTACAAGAATACTTAGCCCATTCAAGTGACAATTCTTTTTTACCTACTTCTCTGGTTTGAAGTAACCCTCATAAGAGTTGCAGGCTCTTACGATCATTTCATTGTTTTAGAAACTCTTTCCTGTTTGTATACCATGAGTTTAAGATAGCTCATTTAATTAAATGTCACGCTTCATGGATAAGCTGCCGAAAAATCTTGGGGTATGTATCTATTTATTTGCTACTCCAGATTGTATTCTGTTATTATTTATTGATAAATGAACTATGGAACTACTATAAAAAAATTTCTCTTGGCTCGCATGCATGTCTTACTTTCTTGTGCATATGCAGGTTATTGGTGTCAAGTCAAACATCCCCCAAATTGGTTTTGACATTGACTCAATCCGTGAAATGATAAATGGACTGGTAAGGCGATCTTTCTTTAGTTGATAAACCTGGTCACCCGAAATTTGTCTTGACATGAAACTGCTGTTTTCAGTTGTGGCATTAGCTCAAAGGGGGTTGGAAATCAAGGAGTTAAATGACAAGTTAAGCTCCCTTGAAGACCAGCTAAAGAAATACCAGGAAGAGACCCTTGAGGTGTCGGGGATCGCTGAATCTTGTAAACTTGAATTTGAAAATATGCTTCTGAAATTACAAGAGAAGATGAACTACAGCTTGAAGCAGGTCAAGTTGAGACACGTAACGGAGCCTTAGCTGAGGCAAATATAAAACTCATTCAAGATCTAGCTTTGGCTGAGAACGAACAAAGTGATCTCCAAGCTAAATTGTCACATGTTCTGGATGAGAAGGATGCCATTGCTGCAAAATGTTTCTTGTCAGAGAAGGCGGTTGAGGAGTTACGCCAGGAGCTAACTTCTGAAAAGTAAAAGCTCCAGTCTGAGGTTTGTACTTCGTACCTCAAACAATTTCATATTACATACGAAGTATTTTTTTTAAAAAAATTCTTTTACAAAACATGATTTAACAATAAATTACCTCTCCTACAGATATCTGCAACCAGCTTCACAAAACAATAAAAGAACTTCAAGCAATTGTGGTCAAATTAGAAGAGCAACTAAACGAATATAGAGGAAAAGAAGATGCTTCAAAGACTGAGATTGAAAATCTTAACCTTGAAACTTCTAAGAAATCTTCCCTGCAAGCAAGGTTGAAGGAACTTGAAGAGCAATATCTGGCAACTGAGGCTCAATAGAAAGAAGAGGTTGGTGTTAAATGAATTGTGAACCTTAATTCAGGTTTAGTTTGTCCGTCTTAAGAAAAACACACTTAACTCTCTATTTTTTGCATGTTAAAAATGTACAAACATCTACTAAAGCGAAAGAGGTTGATTTGACTTCTCAGAATCATATGCAAAAACTCCACGATCGTGATTCGTTGTAGGAAAGGGTTGTGAAACTTGAAGAAGAGTTGTAGCTTACAGAGACCACCGTAACTAAGTTGGTTAGTTAAATGTTTTTGCTCCATGCCTTCTTTTATACAAAATGCTCATGACAATAATTTCAGACATAAGTCTTCTTGGGAATAATTTGTTGCCAATCTTCGTAATCTCCAAACACTTATCAATTTCAATGAAAAATGTTAATCATCTGGATTGTTGGTCTAAGAGAAAGAGGAGAGTTTCGCAAAGACCTCTGAATCGGAAGCTGCCAAGAGTCATACGGCTGAAGAGCTTGACGCCAAAAACAAAACAATCATGTTTTTCGGAAAGAAAATTGAGGAAGTTAGTTGTGTTGAAAAAAAACATATCGCATTGTGAAACCTTTGTATACTCACCTTGGCTTTGGCTGGGACTATCGGAGGAAAATGGTGTATGTGGATTATGAACTATGGAAGGATAACATCGAGGTATACACCATAACTTGTTCTCCTAGCTTTTTTCAGACTATTATCTGCTGTAAGTTGTCAACAAATATGAAAAACTTGCGTCCCTGACAGTAAACCTGCCAGGCCTAAATAATTTAGTTTAAATTTCCCAATATTATTAGGAAACCCTTTTTGTTACAGCTCAAATAGTTAGGGTATTGAATACAAATTATCGACCCAAAATCCTAAATAATATGAGATAAATTACCCTACCAGCTGAATTGATGAACTGAATCTGTATTGGTCTTATGCAGGTGCATCCCGAAGCTTCACCTTACAGAAAGTATGGATGTCCACTTTATGATGATCTATGTAAAATATTTACAAAGCCCATAGCTACTGGAAAGTATGCTTTCTCACCTGAGATGATTACTCCAGTCACTAGCTCTACTTCACGGAAAAATAAGGCTTAAGCTTGTACCTATTATAGCAGTTGAATATCATGTAACAAACCACCTTAGAGTGGTTTGATTTAGGGAATGTTGGGCCCAATAATTTTGTAAACACTAACAAACTACCTTTTGTTTGATTCAGAGAATGTTAATCCCATAATTTTGTAAACTTTATGTTATAATTAAGTGTTTGTGCATAGTAAATAAGTTCTTACTCAATATATTTATAAGCACTAGAACATCATCAACACCATAACTGAAATACCCAGCTACAGTTGCGCGCAGCATACCACTAGTTACTAAAAAAGGAGGACTGGAAAGTCAAATGAACAGAGTTAACCAGTTGTCCAGGTTCAAAACCTGCAAAACCCACAAACATAAAACAGTGAAACAAAAGTAAATAAGTAATACAGAGAAATAAAGGCAAGAAATGAGCCGAAGCTCTCTCCTCCACGCAGCGGGACCCACAACCATGGCTTTCTTCAAACATCTCCTCGTTTCACATTTTACTATTTTCACTAACGGTAACCGTAACGAGCCGTAACGGTTACAGACTTGCAGTTACATCTTCTCCCATCTTTACGTCTCATTTAACGCCTTCGTTTAACCCAATCAAACGGATCTACCTGACTACCTCACCCCCAAACTAA

mRNA sequence

ATGTTCGGCCGAACTTCAGAGGTGTTCGGCCGAACTAAAGCAGGACAGCTTGAAGAATTAAGCCCAGAGTTCGGCCGAACTCTCACAAAAGTTCGGCCGAACTTACATATGTTCGGCCGAACCTCCCCTATTGTTCGACCGAACATCGCAATCAGTAGCTCCTGTTTCTTCCCAGGACAACTAATAGTACACCAGGAAGAAGCTCGTGAAGCCTCTGGGATCGCTGAGTCAAGAAAATCTGAAGTTACTTGCTTCCGTACTTCATTTCCATTTTTATTAACTCCTACTTGCTGCGCACTGTCTAGACGACAAAAAAATCTATCGAAGAGGCTGGAGACCTTGGATTGGAAGCTGGAAGAGCAGAAAGAGATCTCTGGTCAGATACATGATGATGTTATTGGTGTCAAGTCAAACATCCCCCAAATTGGTTTTGACATTGACTCAATCCGTGAAATGATAAATGGACTGCGGGACCCACAACCATGGCTTTCTTCAAACATCTCCTCGTTTCACATTTTACTATTTTCACTAACGGTAACCGTAACGAGCCGTAACGGTTACAGACTTGCAGTTACATCTTCTCCCATCTTTACGTCTCATTTAACGCCTTCGTTTAACCCAATCAAACGGATCTACCTGACTACCTCACCCCCAAACTAA

Coding sequence (CDS)

ATGTTCGGCCGAACTTCAGAGGTGTTCGGCCGAACTAAAGCAGGACAGCTTGAAGAATTAAGCCCAGAGTTCGGCCGAACTCTCACAAAAGTTCGGCCGAACTTACATATGTTCGGCCGAACCTCCCCTATTGTTCGACCGAACATCGCAATCAGTAGCTCCTGTTTCTTCCCAGGACAACTAATAGTACACCAGGAAGAAGCTCGTGAAGCCTCTGGGATCGCTGAGTCAAGAAAATCTGAAGTTACTTGCTTCCGTACTTCATTTCCATTTTTATTAACTCCTACTTGCTGCGCACTGTCTAGACGACAAAAAAATCTATCGAAGAGGCTGGAGACCTTGGATTGGAAGCTGGAAGAGCAGAAAGAGATCTCTGGTCAGATACATGATGATGTTATTGGTGTCAAGTCAAACATCCCCCAAATTGGTTTTGACATTGACTCAATCCGTGAAATGATAAATGGACTGCGGGACCCACAACCATGGCTTTCTTCAAACATCTCCTCGTTTCACATTTTACTATTTTCACTAACGGTAACCGTAACGAGCCGTAACGGTTACAGACTTGCAGTTACATCTTCTCCCATCTTTACGTCTCATTTAACGCCTTCGTTTAACCCAATCAAACGGATCTACCTGACTACCTCACCCCCAAACTAA

Protein sequence

MFGRTSEVFGRTKAGQLEELSPEFGRTLTKVRPNLHMFGRTSPIVRPNIAISSSCFFPGQLIVHQEEAREASGIAESRKSEVTCFRTSFPFLLTPTCCALSRRQKNLSKRLETLDWKLEEQKEISGQIHDDVIGVKSNIPQIGFDIDSIREMINGLRDPQPWLSSNISSFHILLFSLTVTVTSRNGYRLAVTSSPIFTSHLTPSFNPIKRIYLTTSPPN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo17166.1Spo17166.1mRNA


Homology
[Close]
BLAST of Spo17166.1 vs. NCBI nr
Match: gi|902173708|gb|KNA08301.1| (hypothetical protein SOVF_163880 [Spinacia oleracea])

HSP 1 Score: 104.4 bits (259), Expect = 2.600e-19
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 1 

		  

Query: 99  ALSRRQKNLSKRLETLDWKLEEQKEISGQIHDDVIGVKSNIPQIGFDIDSIREMINGL 157
           AL+  +K+LSKRLETLDWKLEEQKEISGQIHDDVIGVKSNI QIGFDIDSIREMINGL
Sbjct: 148 ALATTKKHLSKRLETLDWKLEEQKEISGQIHDDVIGVKSNISQIGFDIDSIREMINGL 205
[Close]
BLAST of Spo17166.1 vs. NCBI nr
Match: gi|731355076|ref|XP_010688947.1| (PREDICTED: uncharacterized protein LOC104902746 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 89.7 bits (221), Expect = 6.700e-15
Identity = 47/67 (70.15%), Postives = 52/67 (77.61%), Query Frame = 1 

		  

Query: 99  ALSRRQKNLSKRLETLDWKLEEQKEISGQIHDDVIGVKSNIPQIGFDIDSIREMINGLRD 158
           AL   +K+LS+RLETLDWKLEEQKEISGQI  DV GVKSNI QIGFDI+SI EM+NGL  
Sbjct: 146 ALETTKKHLSRRLETLDWKLEEQKEISGQILGDVTGVKSNITQIGFDIESICEMVNGLEG 205

Query: 159 PQPWLSS 166
               L S
Sbjct: 206 KLELLES 212
[Close]
BLAST of Spo17166.1 vs. NCBI nr
Match: gi|976916576|gb|KVI02081.1| (hypothetical protein Ccrd_019659 [Cynara cardunculus var. scolymus])

HSP 1 Score: 73.2 bits (178), Expect = 6.500e-10
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1 

		  

Query: 99  ALSRRQKNLSKRLETLDWKLEEQKEISGQIHDDVIGVKSNIPQIGFDIDSIREMINGL 157
           AL+  +++LSKRLE LDWKL+EQKE+S  I DDV  VKSN+ QIG+DID I +M+ GL
Sbjct: 146 ALASTKRHLSKRLENLDWKLDEQKEMSKLIADDVNDVKSNLNQIGYDIDMIHQMVAGL 203
[Close]
BLAST of Spo17166.1 vs. NCBI nr
Match: gi|1009128929|ref|XP_015881502.1| (PREDICTED: uncharacterized protein LOC107417398 [Ziziphus jujuba])

HSP 1 Score: 73.2 bits (178), Expect = 6.500e-10
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 1 

		  

Query: 99  ALSRRQKNLSKRLETLDWKLEEQKEISGQIHDDVIGVKSNIPQIGFDIDSIREMINGLRD 158
           AL+  +K+L+KRLETLDWK+EEQKEIS QI +DV  VKS++ QI FD++ I +M++GL  
Sbjct: 146 ALASTKKHLTKRLETLDWKVEEQKEISQQIANDVNEVKSSLSQIDFDVEIIHQMVSGLEG 205

Query: 159 PQPWLSS 166
               L S
Sbjct: 206 KLELLES 212
[Close]
BLAST of Spo17166.1 vs. NCBI nr
Match: gi|460399932|ref|XP_004245490.1| (PREDICTED: uncharacterized protein LOC101248698 [Solanum lycopersicum])

HSP 1 Score: 71.6 bits (174), Expect = 1.900e-9
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 1 

		  

Query: 99  ALSRRQKNLSKRLETLDWKLEEQKEISGQIHDDVIGVKSNIPQIGFDIDSIREMINGLRD 158
           AL+  +++L+KRLE LDWKL+EQ EIS  I +DV  VK+N+ QIGFDI+ I EM++GL  
Sbjct: 146 ALASTRRHLTKRLENLDWKLDEQIEISNLITNDVRDVKANLNQIGFDINLIHEMVSGLEG 205

Query: 159 PQPWLSSN 167
               L SN
Sbjct: 206 KIELLESN 213
[Close]
BLAST of Spo17166.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QNZ8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_163880 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.800e-19
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 1 

		  

Query: 99  ALSRRQKNLSKRLETLDWKLEEQKEISGQIHDDVIGVKSNIPQIGFDIDSIREMINGL 157
           AL+  +K+LSKRLETLDWKLEEQKEISGQIHDDVIGVKSNI QIGFDIDSIREMINGL
Sbjct: 148 ALATTKKHLSKRLETLDWKLEEQKEISGQIHDDVIGVKSNISQIGFDIDSIREMINGL 205
[Close]
BLAST of Spo17166.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BMF4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g204560 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.700e-15
Identity = 47/67 (70.15%), Postives = 52/67 (77.61%), Query Frame = 1 

		  

Query: 99  ALSRRQKNLSKRLETLDWKLEEQKEISGQIHDDVIGVKSNIPQIGFDIDSIREMINGLRD 158
           AL   +K+LS+RLETLDWKLEEQKEISGQI  DV GVKSNI QIGFDI+SI EM+NGL  
Sbjct: 146 ALETTKKHLSRRLETLDWKLEEQKEISGQILGDVTGVKSNITQIGFDIESICEMVNGLEG 205

Query: 159 PQPWLSS 166
               L S
Sbjct: 206 KLELLES 212
[Close]
BLAST of Spo17166.1 vs. UniProtKB/TrEMBL
Match: M1AWK1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012257 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.500e-10
Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 1 

		  

Query: 99  ALSRRQKNLSKRLETLDWKLEEQKEISGQIHDDVIGVKSNIPQIGFDIDSIREMINGLRD 158
           AL+  +++L+K+LE LDWKL+EQ EIS  I +DV  VK+N+ QIGFDI+ I EM++GL  
Sbjct: 93  ALASTRRHLTKKLENLDWKLDEQIEISNLITNDVRDVKANLNQIGFDINLIHEMVSGLEG 152

Query: 159 PQPWLSSNISSFHILLFSL 178
               L SN    ++ LF++
Sbjct: 153 KIELLESNQLHHNLCLFNI 171
[Close]
BLAST of Spo17166.1 vs. UniProtKB/TrEMBL
Match: A0A103Y3Y2_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_019659 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.500e-10
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1 

		  

Query: 99  ALSRRQKNLSKRLETLDWKLEEQKEISGQIHDDVIGVKSNIPQIGFDIDSIREMINGL 157
           AL+  +++LSKRLE LDWKL+EQKE+S  I DDV  VKSN+ QIG+DID I +M+ GL
Sbjct: 146 ALASTKRHLSKRLENLDWKLDEQKEMSKLIADDVNDVKSNLNQIGYDIDMIHQMVAGL 203
[Close]
BLAST of Spo17166.1 vs. UniProtKB/TrEMBL
Match: M1AWK2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012257 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.700e-10
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1 

		  

Query: 99  ALSRRQKNLSKRLETLDWKLEEQKEISGQIHDDVIGVKSNIPQIGFDIDSIREMINGLRD 158
           AL+  +++L+K+LE LDWKL+EQ EIS  I +DV  VK+N+ QIGFDI+ I EM++GL  
Sbjct: 146 ALASTRRHLTKKLENLDWKLDEQIEISNLITNDVRDVKANLNQIGFDINLIHEMVSGLEG 205

Query: 159 PQPWLSSNISSFHILL 175
               L SN  + +I L
Sbjct: 206 KIELLESNQVNIYICL 221
[Close]
BLAST of Spo17166.1 vs. TAIR (Arabidopsis)
Match: AT1G04960.2 (Protein of unknown function (DUF1664))

HSP 1 Score: 60.8 bits (146), Expect = 1.200e-9
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 1 

		  

Query: 100 LSRRQKNLSKRLETLDWKLEEQKEISGQIHDDVIGVKSNIPQIGFDIDSIREMINGL 157
           L+  +K+LS++L TLDWK+EEQ E S  I  DV  ++S+I QIGFD   + EMI+G+
Sbjct: 163 LASTRKHLSQKLATLDWKVEEQNETSKMILSDVTEMRSSISQIGFDFKQLNEMISGI 219
The following BLAST results are available for this feature:
BLAST of Spo17166.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902173708|gb|KNA08301.1|2.6e-1989.6hypothetical protein SOVF_1638... [more]
gi|731355076|ref|XP_010688947.1|6.7e-1570.1PREDICTED: uncharacterized pro... [more]
gi|976916576|gb|KVI02081.1|6.5e-1062.0hypothetical protein Ccrd_0196... [more]
gi|1009128929|ref|XP_015881502.1|6.5e-1055.2PREDICTED: uncharacterized pro... [more]
gi|460399932|ref|XP_004245490.1|1.9e-954.4PREDICTED: uncharacterized pro... [more]
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BLAST of Spo17166.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QNZ8_SPIOL1.8e-1989.6Uncharacterized protein OS=Spi... [more]
A0A0J8BMF4_BETVU4.7e-1570.1Uncharacterized protein OS=Bet... [more]
M1AWK1_SOLTU4.5e-1048.1Uncharacterized protein OS=Sol... [more]
A0A103Y3Y2_CYNCS4.5e-1062.0Uncharacterized protein OS=Cyn... [more]
M1AWK2_SOLTU7.7e-1050.0Uncharacterized protein OS=Sol... [more]
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BLAST of Spo17166.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo17166.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G04960.21.2e-950.8Protein of unknown function (D... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012458Protein of unknown function DUF1664PFAMPF07889DUF1664coord: 99..157
score: 1.7
NoneNo IPR availablePANTHERPTHR31903FAMILY NOT NAMEDcoord: 99..156
score: 7.8
NoneNo IPR availablePANTHERPTHR31903:SF2SUBFAMILY NOT NAMEDcoord: 99..156
score: 7.8

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0000719 photoreactive repair
biological_process GO:0009409 response to cold
biological_process GO:0009411 response to UV
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
molecular_function GO:0016853 isomerase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo032130.71Barchart | Table
Spo086820.65Barchart | Table