Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAAAAACCAACGACCTAAACTTTGGCCCGGAACAGCCCAGCCCGACATGGCCCGTAATTTGATCATGTGTTGGCCCGTTCAGGACGAAGGGAGTATGTGGAGAAGCCGTGTTTTGTAGAAAGACTTGTACTCCTAAAAACTACAGAATACTGTAGCAAGCAGCAACCATAAGTTGGGTCAGAATTTAAGAAGGAAAACGTGTCGATCAAAATTACTCCGCAGAAACTTCCGACTCTCAACAACCCAACATCAAAAGTCATCCTCTTCCTCGCAAAAATCCCCAATCTCTCTCCTCTCTCTTTCTGAAATCGCATAATCACTGTCTATCAATTTCCTCTCTTTTTCTTTGATCTCATCAGTTTTCTGCTATGGCGACAATCGGACACAACAATCTCAATGCAAAATTGGTATGCTTCTCTTCCCTAATTGCTCTTTTTTACAGCTTTCCTTGCAATTCTAGGTTTTTGATACTCCGATCCTTAAAATTCAGTTCCTTTCCTTCGTTGTTAATGATTCTTACATCGGTTACCACTTCGAATTCGCGATTTTTAGGTACTTCTCGGTGACATGGGAGCTGGAAAATCCAGCGTTGTTCTTCGGTTTGTCAAAGGTCAATTTCTCGAATTCCAGGTAAAATCAAGGGTTTCTCTTTTAAACTTGTGATTTCCAATTAGAAATCTTAATTTTTGATTTCCTTAATTGCTTTTAATTTGTGTTGCAGGAATCGACGATCGGAGCCGCGTTTTTCTCGCAGACATTAGCAGTAAATGACGCCACAGTGAAGTTTGAGATATGGGATACTGCAGGTCAAGAAAGGTACCACAGTTTGGCTCCTATGTATTACAGAGGTGCTGCCGCCGCGATCATCGTATACGACATTACTACACAGGTACAATTTTATCTCCCTTTTACTTGTATGAACTACTCCTGTTTTGTTTGATATTTTAGTTTAGTATGTTAAGTGAAGTGAGCATTAAATCATTAATGTAGACTGGATTCGATCCTAGGCTTTGGGTTCCATTTTCTACGAAAAATAACCAATTAAGCTAGTTGGCATACACACATTTGGACTTTGAAGTGAAAGAGGGAAATGATCCTATGTGAATTTCATGCTGCATGTGAGGTATACAATTTTTGGGGTTCAGTATAGACTATATCAGTCTGAGAGGAGAGTAACTTGGTCTATGATACTGGTTAAGGTATGGAAGCATATATGGTATAATCATGCTTAACTATTTTTCCCCGTGTTTTGCATGAAACGATGTTAAATAAATGAATATAAATTTGAATGTATGCACTATATCTGGTTTGTATAGTGGTATCTAAGAACAGTCAATGCGAATTTGTTCGGTTATATCTTCTTACTTTCTTAGCGCTTCCATGTCTCTCTTTGGGTATGAGGAAGGCTGCTTTGTTTGCTATGAACAGCCACTGTGGTGATTATTTGTGGTATAGGAAAATGAACATTGCATTTGATAACCTTAATTTCTTGTTTAAATGTCCCAAGTAATTTGTATAATAAAAAACTAAGTTTTATCTATCACTCTATCAGTTTCTTTTATGTTTTTCTGTGAGAAGGTTGTGCTGTTTGGAATTTTCTGTATATAGTAGTATATGTAATTCATATCGTTTCTTTCTAAGTTCTCCTCGTGGATTGTCGCATTTATTGAGTTTCTGATTGCCAAAATTCTTTCAGGAGTCCTTTTCTCGTGCTAAGAAGTGGGTACAGGAACTTCAGAAGCAAGGTATGTGCAGCCTGGTTACGTTTCTTGTTTAATTTATCGTTTTGTTTTGAGAGCACTAGTAACATCTTATTTAATGCTTTAAATGTTTTCTGTATATCAGGACTCCTAATTGTTGTGGTCTACTGATGGTTTATTATGCAGGGAATCCAAACATGGTAATGGCACTCGCAGGGAACAAAGCTGATTTGGAAGAGAAAAGGGTTGTTTTAGCTGAAGTAAGTGTGGTACCTGTTACTTATTAGTGTGGTTTATTATTATCCATCTCTTTTCAAAGTATTGGTGAATGTTCCTTCTCAGTTTCTTTATTACCCCTAATTTTTTTATGTCGACGCCTCTGTTTTTTTTTGGGGGAAATTGATCTCCATTAGTCTTGATTGGTTACGAGTAAGCCTGGGCGTGTTGAATCTCCTTGTGAAATTAACTGGAAATCAGACCTGAACATGTTTACTGTAGTTATTGAATTCACTCATAACCCCCTCGCTTCTGGTGACCTTATTCGTGTAACATGGATTTTTACTTGTTGCTGTCTGTTAAGTTGGCTGTTGATTAGTTGTCAATACTCAATAACATAATGCCTAAAAACAATTAATGTTATTGAGTATTGACATTTGACCTAGTCATCCCATTTAGTTCTTTTGAAATTCTACTTTCGTTGGAAAAATATTGTTCCTGTATGCCTGTATGGTTGAGGACTCCAATGCGTGGGTTATTCCGCTCCTTACTGTTTTTGGTACACACTTGTTTGAGGAAGAATTTGTTTCTCATAGTTGTAAAATATACTCTACACGTGGATAATTTTGTTCAGGGATAACTATAATTTTGTTCAGGGATAACTATCTCTCTGCATTCATGTGTCAGACTGTTTATTTCACCTCAAGTACATGTGTTAGTTACTTGACGCCCCGACTTGGATATGGACATTTGACATTTGTGTTGGTCTGAAGCGTTTTGATTTGTTTAATAAAATGTCAAGTTTGACATGGTGGTGGACATGATTTGTGGAATTTGGGCATCATTAATCTGCATTGACTAGAGTAATTTTGTTAAAATAGTAACAGTTTAAACGTACATTTATTCATTTTGTAGGAGGCACGTACGTACGCTGAAGAAAATGGTCTTTTCTTCATGGAAACATCGGCGAAAACAGCAAAGAATGTGAATGAGATATTTTATGAAATAGGTGCGTGACAGATATTCTGTACCTATGAATCTTTTCTTTATGATTGCGGTTTTGACATGTACATGCAGCTTTGTCAAAGTGGAATTGACAGGTTGGATATTAATTGTTAGCTTTACTGTTGGGATAAAGCTTGGCAAGAATCATGATAGATGGCTCTTTATGCTACATAATGATTTGTTGCATAGTTGTGCATGACATAATTTTATTTTGTAAGGAGACTGTATTATTGGTTTACTTTTCTGAAAAACATTATGTTTGCATCTTACATGATTTGTTTTTGCGTTGAGCTACACTTTTGGCAAGGAAGACCGTATTTGTTCAAGTGATAATCAATCACTTTGCAGTGTAATTTTTTTTGAAATTATAGGAACAAAATTTAAAGAAAAGGTCATGCACCCCACCTTAGGTACTGCTTTTCTTGGTTGAACATCATAAGCTACCTGGACCTGCATAGTTCTAGCCATCAGTCTCTTGTTAGGATTGTTTGCCTTCTACGTCTGCTTTCACTTTACTTCTGCAGAAGCTTAAGCATATTTTAATTTCCTTCTGTCAGTTCAAACTTAAGAGTTTGGAAATCCATGTCTTGTAACCATATATTTTGCCTTCAGTTATCTTGTGTTCTTCATCTCCAGTTTCGGCATTGCTACTAGTGGCTCTTGTACCTTATAATCTTTTTATTGAACTAGTAAAGTTCAGAAAGAAACAATTGTCACTAACTTTGCTGTCCTCATTTGTGGCAATGTCTTTTCTAGTGGTTTTCTTGAAGTTGTTTCTTGCTGCCCTAGGGCATTTAATGCCAATTATTTCTGTCTTTTCTGACATAATTTGCACCTGTAAAATAGCCAAAAAATTACCGAGGGCTCAAGCGCCACAGAATCCAGCTGGAATGGTTCTTGTCGATCGGCAGGGAGATGCGGCCAGAGCTTCATCATGCTGTTCTTAAGTATTCTGCATCGAGCTTTGCATCAAGTACGTTGGTGACATGGTGAAATATTCTATTCCAGCTGATGACTAGGAATTGCTTTCTAAATTCTGAGATGTGTATACTAATTTGTATGCTAACATTTCTGGTGGAGATGCGTGTGCTGTTTGATATTTACTTTCTAGTTTTCAACATTCTTTCCTCGTGGGATGTCCGTACACTATTTCTGTGTCTATAGCTGTAAATAAAGTAAGGGTTTTCTTTTAGCAGGAATAGGTGTTTCAGAATAGGAGAGATGCCAAGAACTCCGGGGCTGCTTTAAGCGGGCAACATGTGTGCGTAGCCGTAGCTGTTGTTTCTTCAGTGTCGTATAATCTGTACATTTGGTGCGACTTAGTCCTACTGAATCTTTTTTTTATATATTGTCACGCATGAATTTCATCATTCCTGTTTTTGTATGAAGATTAATGGCTTGTTAGCGGAACAAGAGTTCATCGATTCATAATTGTGGATAGCCAGAAGCTTAAGTGTATACATCTCTTCCCAGTTGCACACACTTTGGGGGTTCTTTTTGTTTTTGTTTTTTTTTAAATTTTTATGTCCCAGTTACCGGAACCAATGCCTTCATTTCCATACACTTTTGATATTAGAGCTGATTGTCCATTAGTTGTCATATTTAATTGAGTTTGTAATTTTAATTTGTCATATTGGGTGATGCAAATTGACCAACTTGATACCCATTTCAAGATTGAAAATAGAATTAAGTCCAAAG TAAAAACCAACGACCTAAACTTTGGCCCGGAACAGCCCAGCCCGACATGGCCCGTAATTTGATCATGTGTTGGCCCGTTCAGGACGAAGGGAGTATGTGGAGAAGCCGTGTTTTGTAGAAAGACTTGTACTCCTAAAAACTACAGAATACTGTAGCAAGCAGCAACCATAAGTTGGGTCAGAATTTAAGAAGGAAAACGTGTCGATCAAAATTACTCCGCAGAAACTTCCGACTCTCAACAACCCAACATCAAAAGTCATCCTCTTCCTCGCAAAAATCCCCAATCTCTCTCCTCTCTCTTTCTGAAATCGCATAATCACTGTCTATCAATTTCCTCTCTTTTTCTTTGATCTCATCAGTTTTCTGCTATGGCGACAATCGGACACAACAATCTCAATGCAAAATTGGTACTTCTCGGTGACATGGGAGCTGGAAAATCCAGCGTTGTTCTTCGGTTTGTCAAAGGTCAATTTCTCGAATTCCAGGAATCGACGATCGGAGCCGCGTTTTTCTCGCAGACATTAGCAGTAAATGACGCCACAGTGAAGTTTGAGATATGGGATACTGCAGGTCAAGAAAGGTACCACAGTTTGGCTCCTATGTATTACAGAGGTGCTGCCGCCGCGATCATCGTATACGACATTACTACACAGGAGTCCTTTTCTCGTGCTAAGAAGTGGGTACAGGAACTTCAGAAGCAAGGGAATCCAAACATGGTAATGGCACTCGCAGGGAACAAAGCTGATTTGGAAGAGAAAAGGGTTGTTTTAGCTGAAGAGGCACGTACGTACGCTGAAGAAAATGGTCTTTTCTTCATGGAAACATCGGCGAAAACAGCAAAGAATGTGAATGAGATATTTTATGAAATAGCCAAAAAATTACCGAGGGCTCAAGCGCCACAGAATCCAGCTGGAATGGTTCTTGTCGATCGGCAGGGAGATGCGGCCAGAGCTTCATCATGCTGTTCTTAAGTATTCTGCATCGAGCTTTGCATCAACAGGAATAGGTGTTTCAGAATAGGAGAGATGCCAAGAACTCCGGGGCTGCTTTAAGCGGGCAACATGTGTGCGTAGCCGTAGCTGTTGTTTCTTCAGTGTCGTATAATCTGTACATTTGGTGCGACTTAGTCCTACTGAATCTTTTTTTTATATATTGTCACGCATGAATTTCATCATTCCTGTTTTTGTATGAAGATTAATGGCTTGTTAGCGGAACAAGAGTTCATCGATTCATAATTGTGGATAGCCAGAAGCTTAAGTGTATACATCTCTTCCCAGTTGCACACACTTTGGGGGTTCTTTTTGTTTTTGTTTTTTTTTAAATTTTTATGTCCCAGTTACCGGAACCAATGCCTTCATTTCCATACACTTTTGATATTAGAGCTGATTGTCCATTAGTTGTCATATTTAATTGAGTTTGTAATTTTAATTTGTCATATTGGGTGATGCAAATTGACCAACTTGATACCCATTTCAAGATTGAAAATAGAATTAAGTCCAAAG ATGGCGACAATCGGACACAACAATCTCAATGCAAAATTGGTACTTCTCGGTGACATGGGAGCTGGAAAATCCAGCGTTGTTCTTCGGTTTGTCAAAGGTCAATTTCTCGAATTCCAGGAATCGACGATCGGAGCCGCGTTTTTCTCGCAGACATTAGCAGTAAATGACGCCACAGTGAAGTTTGAGATATGGGATACTGCAGGTCAAGAAAGGTACCACAGTTTGGCTCCTATGTATTACAGAGGTGCTGCCGCCGCGATCATCGTATACGACATTACTACACAGGAGTCCTTTTCTCGTGCTAAGAAGTGGGTACAGGAACTTCAGAAGCAAGGGAATCCAAACATGGTAATGGCACTCGCAGGGAACAAAGCTGATTTGGAAGAGAAAAGGGTTGTTTTAGCTGAAGAGGCACGTACGTACGCTGAAGAAAATGGTCTTTTCTTCATGGAAACATCGGCGAAAACAGCAAAGAATGTGAATGAGATATTTTATGAAATAGCCAAAAAATTACCGAGGGCTCAAGCGCCACAGAATCCAGCTGGAATGGTTCTTGTCGATCGGCAGGGAGATGCGGCCAGAGCTTCATCATGCTGTTCTTAA MATIGHNNLNAKLVLLGDMGAGKSSVVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITTQESFSRAKKWVQELQKQGNPNMVMALAGNKADLEEKRVVLAEEARTYAEENGLFFMETSAKTAKNVNEIFYEIAKKLPRAQAPQNPAGMVLVDRQGDAARASSCCS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo17226.1 vs. NCBI nr
Match: gi|902219652|gb|KNA18373.1| (hypothetical protein SOVF_071420 [Spinacia oleracea]) HSP 1 Score: 390.6 bits (1002), Expect = 1.700e-105 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1
BLAST of Spo17226.1 vs. NCBI nr
Match: gi|731328757|ref|XP_010675227.1| (PREDICTED: ras-related protein RHN1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 375.6 bits (963), Expect = 5.600e-101 Identity = 190/200 (95.00%), Postives = 197/200 (98.50%), Query Frame = 1
BLAST of Spo17226.1 vs. NCBI nr
Match: gi|356569718|ref|XP_003553043.1| (PREDICTED: ras-related protein RHN1 isoform X2 [Glycine max]) HSP 1 Score: 356.7 bits (914), Expect = 2.700e-95 Identity = 180/200 (90.00%), Postives = 189/200 (94.50%), Query Frame = 1
BLAST of Spo17226.1 vs. NCBI nr
Match: gi|1021550889|ref|XP_016166826.1| (PREDICTED: ras-related protein RHN1 [Arachis ipaensis]) HSP 1 Score: 356.3 bits (913), Expect = 3.500e-95 Identity = 180/200 (90.00%), Postives = 190/200 (95.00%), Query Frame = 1
BLAST of Spo17226.1 vs. NCBI nr
Match: gi|593692858|ref|XP_007146971.1| (hypothetical protein PHAVU_006G086000g [Phaseolus vulgaris]) HSP 1 Score: 355.9 bits (912), Expect = 4.600e-95 Identity = 180/200 (90.00%), Postives = 189/200 (94.50%), Query Frame = 1
BLAST of Spo17226.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFV1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_071420 PE=4 SV=1) HSP 1 Score: 390.6 bits (1002), Expect = 1.200e-105 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1
BLAST of Spo17226.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FBV4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g084640 PE=4 SV=1) HSP 1 Score: 375.6 bits (963), Expect = 3.900e-101 Identity = 190/200 (95.00%), Postives = 197/200 (98.50%), Query Frame = 1
BLAST of Spo17226.1 vs. UniProtKB/TrEMBL
Match: A0A0B2PM60_GLYSO (Ras-related protein RHN1 OS=Glycine soja GN=glysoja_032179 PE=4 SV=1) HSP 1 Score: 356.7 bits (914), Expect = 1.900e-95 Identity = 180/200 (90.00%), Postives = 189/200 (94.50%), Query Frame = 1
BLAST of Spo17226.1 vs. UniProtKB/TrEMBL
Match: A0A0R4J4F2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G153000 PE=4 SV=1) HSP 1 Score: 356.7 bits (914), Expect = 1.900e-95 Identity = 180/200 (90.00%), Postives = 189/200 (94.50%), Query Frame = 1
BLAST of Spo17226.1 vs. UniProtKB/TrEMBL
Match: V7BPJ0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G086000g PE=4 SV=1) HSP 1 Score: 355.9 bits (912), Expect = 3.200e-95 Identity = 180/200 (90.00%), Postives = 189/200 (94.50%), Query Frame = 1
BLAST of Spo17226.1 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1) HSP 1 Score: 341.3 bits (874), Expect = 7.300e-93 Identity = 172/200 (86.00%), Postives = 185/200 (92.50%), Query Frame = 1
BLAST of Spo17226.1 vs. ExPASy Swiss-Prot
Match: RAB5_TOBAC (Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1) HSP 1 Score: 333.6 bits (854), Expect = 1.500e-90 Identity = 168/200 (84.00%), Postives = 184/200 (92.00%), Query Frame = 1
BLAST of Spo17226.1 vs. ExPASy Swiss-Prot
Match: RAF2B_ARATH (Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1 SV=1) HSP 1 Score: 315.1 bits (806), Expect = 5.600e-85 Identity = 159/200 (79.50%), Postives = 177/200 (88.50%), Query Frame = 1
BLAST of Spo17226.1 vs. ExPASy Swiss-Prot
Match: RAF2A_ARATH (Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1 SV=1) HSP 1 Score: 310.5 bits (794), Expect = 1.400e-83 Identity = 159/200 (79.50%), Postives = 174/200 (87.00%), Query Frame = 1
BLAST of Spo17226.1 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 4.900e-65 Identity = 131/201 (65.17%), Postives = 156/201 (77.61%), Query Frame = 1
BLAST of Spo17226.1 vs. TAIR (Arabidopsis)
Match: AT4G19640.1 (Ras-related small GTP-binding family protein) HSP 1 Score: 315.1 bits (806), Expect = 3.200e-86 Identity = 159/200 (79.50%), Postives = 177/200 (88.50%), Query Frame = 1
BLAST of Spo17226.1 vs. TAIR (Arabidopsis)
Match: AT5G45130.1 (RAB homolog 1) HSP 1 Score: 310.5 bits (794), Expect = 7.800e-85 Identity = 159/200 (79.50%), Postives = 174/200 (87.00%), Query Frame = 1
BLAST of Spo17226.1 vs. TAIR (Arabidopsis)
Match: AT3G54840.1 (Ras-related small GTP-binding family protein) HSP 1 Score: 220.7 bits (561), Expect = 8.100e-58 Identity = 109/167 (65.27%), Postives = 135/167 (80.84%), Query Frame = 1
BLAST of Spo17226.1 vs. TAIR (Arabidopsis)
Match: AT4G35860.1 (GTP-binding 2) HSP 1 Score: 154.5 bits (389), Expect = 7.100e-38 Identity = 72/160 (45.00%), Postives = 107/160 (66.88%), Query Frame = 1
BLAST of Spo17226.1 vs. TAIR (Arabidopsis)
Match: AT1G07410.1 (RAB GTPase homolog A2B) HSP 1 Score: 154.5 bits (389), Expect = 7.100e-38 Identity = 85/200 (42.50%), Postives = 122/200 (61.00%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17226.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo17226.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo17226.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo17226.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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