Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAAAATATTCTTTTTTATTTCTATTTTTTGGAATTATTAATTATTAATAATATTTAATAATAAATTAAGAAAGGTCACATTATCTAGAAGTATAAATAGTAGTTGCACCATGTTTGAGTAGAAACCATATGAATATTTTTGAGCTGATACTTGAAGCCAAGAAATTACAACAACAAATCATGGAAGAAGCAAAGATGAACTTTCAATTATTTCCAACACCTGAGGAACTTGAAATAATTTCTGCAAACAATTTTCAACAAAAAATTAATTTAAGTTTTTTCAATAAATCAGAGAAATTATTTGATGGTAGTAGTAGTAGCTGTGATTCCACCACCACTACTGTTACATCCTTTGATTCAAATTCATCATCAGATTTAATGGAGGATGCAACTTCTTCTTCTTCATCTTCATCTTCATCTTCATCTTCAGATGGTCCCTTGTTTCATTTGTCAGATCTCATGGATAAACTTCCTATCAAGTAAGTAAATCAATTTCATCCTTTTTGTTTCATTGTGCTGATTTTTATTTATTTATTTATTTATTTATTTATTATTGAGTATATGAAATGGGATTGTTTGCTAATGAAATAAAGTTTGAATCTTTTTTTTACAGAAGAGGGCTTTCAAAGTATTACACGGGAAAATCAGAGTCATTTACATCACTAGCAAGTGTCGAAAATTTGGAAGATCTTGCAAAGAGAGAGAATCCGTACAGGAAAAGGGTGAAATTGTGCAGGAATTATTACAGTCCAAAACCCACAATTGCAAAGAAAGCTTCTTATTCAAGGAATTCATTTTCAAGTAATTTCATGAGCAGACCTCCTTCAATTCCTTCTGTGTTAAAGGATTTTTAATTTATTTTTTTCTTTCTATTTTTAGAAGTATATTTTTTTCAAAGGTAAATCAGAAAATTTTGTACGGTTAGCAATCTGCCTTTTCAGTGTTCACAGCTGCAAGTGCAAGAGCTTAAAAGAGGGTTTTCTCATTATTAATACTGGTTCATAAATCTTTTATCTCAAATTTATTATGATCAGCTGTATATCTTATATTCTTATCCATAGTCCGTACTACAGAACAGTAAGTGCATAAGCATAACATGAATCATGTGAAACGATTAATCTCTGAAGTTGTAGTACTGTAATACATACTAGTCCATGAAAGAAATACATGTATATAGAGTTTAATTAAACCTATGGTAGTATGGTGTGTGTTGTGTATTTTAAATACTCATAAATATATCTTTGTTAAACCATATACGAAGTACTAATGATATTGTTTTAGTCAATATTGGTCGGATATGGATTCATTGATCAAAGAAATGAAAATAGGCTATTGTGATTCACATTAACTATCTTACAAAAATGAAAGGAGGTATTTATAACGAATTCACAATATTGACTGTTTATCACTAGGTGGTTTTTATTTTTTGTAAAGAAACGAGGCATTGTCGTGCTGAAGGAGAGGCCATCCAGCGGTAAGACCAGTCGTAAAGTTTAATGGCGTGGAAGAGAAATTGAAGTGAGAATAGGAAAAGGGGAAAATAAGAGGTTGATTGGTGTTTGTGATAGCCTGCTGTGAATCTTGTTTTCTAGTTAGGTTTTTTAATTACATTACATTACATAAGGATTGTGATTATGATTATGACAATGACAATTTTCTCTCTTAAGTTAAAACACTAAAAACTCATCTATAATGAAATTCGTCATTCTTCTCTCTTGGAAGAAGTAAAAATCCAATGATGTGATATTTTTGTGAAAACATAACAGCGAAAAAATACAATGAA TAAAATATTCTTTTTTATTTCTATTTTTTGGAATTATTAATTATTAATAATATTTAATAATAAATTAAGAAAGGTCACATTATCTAGAAGTATAAATAGTAGTTGCACCATGTTTGAGTAGAAACCATATGAATATTTTTGAGCTGATACTTGAAGCCAAGAAATTACAACAACAAATCATGGAAGAAGCAAAGATGAACTTTCAATTATTTCCAACACCTGAGGAACTTGAAATAATTTCTGCAAACAATTTTCAACAAAAAATTAATTTAAGTTTTTTCAATAAATCAGAGAAATTATTTGATGGTAGTAGTAGTAGCTGTGATTCCACCACCACTACTGTTACATCCTTTGATTCAAATTCATCATCAGATTTAATGGAGGATGCAACTTCTTCTTCTTCATCTTCATCTTCATCTTCATCTTCAGATGGTCCCTTGTTTCATTTGTCAGATCTCATGGATAAACTTCCTATCAAAAGAGGGCTTTCAAAGTATTACACGGGAAAATCAGAGTCATTTACATCACTAGCAAGTGTCGAAAATTTGGAAGATCTTGCAAAGAGAGAGAATCCGTACAGGAAAAGGGTGAAATTGTGCAGGAATTATTACAGTCCAAAACCCACAATTGCAAAGAAAGCTTCTTATTCAAGGAATTCATTTTCAAGTAATTTCATGAGCAGACCTCCTTCAATTCCTTCTGTGTTAAAGGATTTTTAATTTATTTTTTTCTTTCTATTTTTAGAAGTATATTTTTTTCAAAGGTAAATCAGAAAATTTTGTACGGTTAGCAATCTGCCTTTTCAGTGTTCACAGCTGCAAGTGCAAGAGCTTAAAAGAGGGTTTTCTCATTATTAATACTGGTTCATAAATCTTTTATCTCAAATTTATTATGATCAGCTGTATATCTTATATTCTTATCCATAGTCCGTACTACAGAACAGTAAGTGCATAAGCATAACATGAATCATGTGAAACGATTAATCTCTGAAGTTGTAGTACTGTAATACATACTAGTCCATGAAAGAAATACATGTATATAGAGTTTAATTAAACCTATGGTAGTATGGTGTGTGTTGTGTATTTTAAATACTCATAAATATATCTTTGTTAAACCATATACGAAGTACTAATGATATTGTTTTAGTCAATATTGGTCGGATATGGATTCATTGATCAAAGAAATGAAAATAGGCTATTGTGATTCACATTAACTATCTTACAAAAATGAAAGGAGGTATTTATAACGAATTCACAATATTGACTGTTTATCACTAGGTGGTTTTTATTTTTTGTAAAGAAACGAGGCATTGTCGTGCTGAAGGAGAGGCCATCCAGCGGTAAGACCAGTCGTAAAGTTTAATGGCGTGGAAGAGAAATTGAAGTGAGAATAGGAAAAGGGGAAAATAAGAGGTTGATTGGTGTTTGTGATAGCCTGCTGTGAATCTTGTTTTCTAGTTAGGTTTTTTAATTACATTACATTACATAAGGATTGTGATTATGATTATGACAATGACAATTTTCTCTCTTAAGTTAAAACACTAAAAACTCATCTATAATGAAATTCGTCATTCTTCTCTCTTGGAAGAAGTAAAAATCCAATGATGTGATATTTTTGTGAAAACATAACAGCGAAAAAATACAATGAA ATGAATATTTTTGAGCTGATACTTGAAGCCAAGAAATTACAACAACAAATCATGGAAGAAGCAAAGATGAACTTTCAATTATTTCCAACACCTGAGGAACTTGAAATAATTTCTGCAAACAATTTTCAACAAAAAATTAATTTAAGTTTTTTCAATAAATCAGAGAAATTATTTGATGGTAGTAGTAGTAGCTGTGATTCCACCACCACTACTGTTACATCCTTTGATTCAAATTCATCATCAGATTTAATGGAGGATGCAACTTCTTCTTCTTCATCTTCATCTTCATCTTCATCTTCAGATGGTCCCTTGTTTCATTTGTCAGATCTCATGGATAAACTTCCTATCAAAAGAGGGCTTTCAAAGTATTACACGGGAAAATCAGAGTCATTTACATCACTAGCAAGTGTCGAAAATTTGGAAGATCTTGCAAAGAGAGAGAATCCGTACAGGAAAAGGGTGAAATTGTGCAGGAATTATTACAGTCCAAAACCCACAATTGCAAAGAAAGCTTCTTATTCAAGGAATTCATTTTCAAGTAATTTCATGAGCAGACCTCCTTCAATTCCTTCTGTGTTAAAGGATTTTTAA MNIFELILEAKKLQQQIMEEAKMNFQLFPTPEELEIISANNFQQKINLSFFNKSEKLFDGSSSSCDSTTTTVTSFDSNSSSDLMEDATSSSSSSSSSSSSDGPLFHLSDLMDKLPIKRGLSKYYTGKSESFTSLASVENLEDLAKRENPYRKRVKLCRNYYSPKPTIAKKASYSRNSFSSNFMSRPPSIPSVLKDF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo17241.1 vs. NCBI nr
Match: gi|902236224|gb|KNA24273.1| (hypothetical protein SOVF_017200 [Spinacia oleracea]) HSP 1 Score: 180.3 bits (456), Expect = 3.400e-42 Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1
BLAST of Spo17241.1 vs. NCBI nr
Match: gi|731354006|ref|XP_010688351.1| (PREDICTED: uncharacterized protein LOC104902318 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 178.7 bits (452), Expect = 9.800e-42 Identity = 124/208 (59.62%), Postives = 149/208 (71.63%), Query Frame = 1
BLAST of Spo17241.1 vs. NCBI nr
Match: gi|1009167966|ref|XP_015902403.1| (PREDICTED: suppressor protein SRP40-like [Ziziphus jujuba]) HSP 1 Score: 119.8 bits (299), Expect = 5.400e-24 Identity = 91/192 (47.40%), Postives = 127/192 (66.15%), Query Frame = 1
BLAST of Spo17241.1 vs. NCBI nr
Match: gi|567868471|ref|XP_006426858.1| (hypothetical protein CICLE_v10026542mg [Citrus clementina]) HSP 1 Score: 116.7 bits (291), Expect = 4.600e-23 Identity = 78/149 (52.35%), Postives = 103/149 (69.13%), Query Frame = 1
BLAST of Spo17241.1 vs. NCBI nr
Match: gi|1009162546|ref|XP_015899497.1| (PREDICTED: uncharacterized protein LOC107432813 [Ziziphus jujuba]) HSP 1 Score: 108.2 bits (269), Expect = 1.600e-20 Identity = 77/148 (52.03%), Postives = 102/148 (68.92%), Query Frame = 1
BLAST of Spo17241.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RXU2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_017200 PE=4 SV=1) HSP 1 Score: 180.3 bits (456), Expect = 2.300e-42 Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1
BLAST of Spo17241.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BT98_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g197670 PE=4 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 6.800e-42 Identity = 124/208 (59.62%), Postives = 149/208 (71.63%), Query Frame = 1
BLAST of Spo17241.1 vs. UniProtKB/TrEMBL
Match: A0A067E9T2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029278mg PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 3.200e-23 Identity = 78/149 (52.35%), Postives = 103/149 (69.13%), Query Frame = 1
BLAST of Spo17241.1 vs. UniProtKB/TrEMBL
Match: V4RYI7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026542mg PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 3.200e-23 Identity = 78/149 (52.35%), Postives = 103/149 (69.13%), Query Frame = 1
BLAST of Spo17241.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQD7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_041000 PE=4 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 1.900e-20 Identity = 76/146 (52.05%), Postives = 103/146 (70.55%), Query Frame = 1
BLAST of Spo17241.1 vs. TAIR (Arabidopsis)
Match: AT4G26288.1 (FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 80.5 bits (197), Expect = 1.300e-15 Identity = 73/148 (49.32%), Postives = 93/148 (62.84%), Query Frame = 1
BLAST of Spo17241.1 vs. TAIR (Arabidopsis)
Match: AT5G56550.1 (oxidative stress 3) HSP 1 Score: 69.7 bits (169), Expect = 2.300e-12 Identity = 64/173 (36.99%), Postives = 92/173 (53.18%), Query Frame = 1
BLAST of Spo17241.1 vs. TAIR (Arabidopsis)
Match: AT5G21940.1 (unknown protein) HSP 1 Score: 52.4 bits (124), Expect = 3.700e-7 Identity = 51/148 (34.46%), Postives = 78/148 (52.70%), Query Frame = 1
BLAST of Spo17241.1 vs. TAIR (Arabidopsis)
Match: AT4G31510.1 (unknown protein) HSP 1 Score: 48.1 bits (113), Expect = 7.000e-6 Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17241.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo17241.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo17241.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo17241.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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