Spo17251 (gene) | SpinachBase

Overview


Name	Spo17251
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	(BnaA04g06340D protein) (BnaC09g16540D protein) (BnaC09g26900D protein) (BnaC09g29260D protein) (BnaCnng13070D protein) (BnaUnng00860D protein)
Location	SpoScf_00573 : 288203 .. 289852 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCTGAGTTACACAAGTGTTTCCATTCTCAAGTGTAGAGCTATGCACAAAAGAATATTTTCTTTGGCAATATCACAAAAAACATTACACAATGTACCCATGTTGTAGGCATCTCAAATTGCCAATGACATAAATCACGAACATATGAAAAGGGAAACCAGCCCTCTAGCCCAAGTGAAAGGGAGCAAAGCAGTACAGGCATCGATTCCAAGCTAATGTCAATTGGAAAACACAAAGAAGCGTGCCACCATCCAGTTCATGACTTTGACAGATAACTCAAAGTTTTTTTTTTTTGGCAAATAACTCAAAGTTATGACAACATAAAGTTATGTTGACATTTCAAAAACAAAATAGCAGAGTAAAGAACAACAAAAATTTAGGCATCTGTTAGTGGCTTGTAGCATCTTATATAGTTTTATCCCTCTCAGCTAAAATCTGAATTCCTTCTACTCCCTCCGCCCCTTAATAGTCACCCCGCTTTCCTTACAAATTTGTCCCTTAATACTCGTCCCGTTTCTATAATGACATATTTTTACTAATATTATATTATTTCTCTCACTTCACCACGGACCCACCTATATTCCTACTTCCTTAAAAAACATTAAAAAAATCAATCCCCCACCAAATTGGCTTAAACTCTGTGTCGGTCAAACCGGGGCGAGTATTTCGAGACGAAGGGAGTACTATATTTTCACATCTTTATGCCGCAACAGCAAACATTTGTTTATGTTCCCTTTAAATCTATTTAATTATCTAGTAACAAGGCTCCTGGTTGGAGGCAGCTTGACAAGATTGCTTAGGATTTAGGACGGAGATGTCCATTAATAGAGAGAGATTTCTTGATATCTTCCTATACTATTATCTTATATGGTATCAAACTAGGTCCCTGAAATCCTAGTAGCCACCCACCTCCTATCTTCTTCTTTATTCCTTCTTTCTCCTAATCTCCCATGGCTGACACATCTAAGTTGCATCCTGCAACAACAGTCACAAACATCAAATCATGCATTCCCATTGCTCTTGACTATGAAGGAAGCCAATACAATAACTGGGCTACCCTCTTCAAGCTCCATAGCCGAGCCAATCTGGTAATTGATCACATCTTACCACCTGCTTCCTCCACCACCTCGTCGATTGCAACAGAGGAAACCCCATCCCTCTCTTTCCTTTTTACGTCCCCGTGTCCCCCTGTGTGGCGACATGGAGGCAAAAAAGGGGATCCTATTGTTCCGACCTAGGATAATAAGCCCATGAGCTTGGTCTTACTTCACCGCCGAGAAACGAAAGAAGACTTCCAACTCCAAGTTTAAGTTTAAGTTTAACTCAGACGTCGCTCGCCTCTTTTTGGGTGTGAAGCAGTGTCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCACTAGCCCTGCCTTCGGCATCCCCCTCCTTGCGGTTAAGGTAACGACTTCGGGCATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTGCAATCCGAACTGA

mRNA sequence

ATGGCATCTGAGTTACACAAACGTCGCTCGCCTCTTTTTGGGTGTGAAGCAGTGTCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCACTAGCCCTGCCTTCGGCATCCCCCTCCTTGCGGTTAAGGTAACGACTTCGGGCATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTGCAATCCGAACTGA

Coding sequence (CDS)

ATGGCATCTGAGTTACACAAACGTCGCTCGCCTCTTTTTGGGTGTGAAGCAGTGTCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCACTAGCCCTGCCTTCGGCATCCCCCTCCTTGCGGTTAAGGTAACGACTTCGGGCATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTGCAATCCGAACTGA

Protein sequence

MASELHKRRSPLFGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo17251.1	Spo17251.1	mRNA

Homology

[Close]

BLAST of Spo17251.1 vs. NCBI nr
Match: gi|674871096|emb|CDY63598.1| (BnaUnng00860D [Brassica napus])

HSP 1 Score: 192.6 bits (488), Expect = 3.700e-46
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 1

		  
Query: 13  FGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMAS 72
           FG EAVSN NTQ+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFG PLLAVKVTTSGMAS
Sbjct: 3   FGFEAVSNLNTQEALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGTPLLAVKVTTSGMAS 62

Query: 73  SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 113
           SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN
Sbjct: 63  SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 102

[Close]

BLAST of Spo17251.1 vs. NCBI nr
Match: gi|145408582|ref|YP_001152206.1| (ORF137 [Pinus koraiensis])

HSP 1 Score: 183.3 bits (464), Expect = 2.300e-43
Identity = 91/97 (93.81%), Postives = 94/97 (96.91%), Query Frame = 1

		  
Query: 16  EAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHS 75
           +AVSN+  Q+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTT GMASSHS
Sbjct: 41  DAVSNEEAQKALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTWGMASSHS 100

Query: 76  VTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 113
           VTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN
Sbjct: 101 VTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 137

[Close]

BLAST of Spo17251.1 vs. NCBI nr
Match: gi|1012337673|gb|KYP48942.1| (hypothetical protein KK1_029343, partial [Cajanus cajan])

HSP 1 Score: 176.8 bits (447), Expect = 2.100e-41
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 1

		  
Query: 23  TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK 82
           TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK
Sbjct: 1   TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK 60

Query: 83  ARERIHRRMADRRLLAIPASCRRVAACNPN 113
           ARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 61  ARERIHRRMADRRLLAIPASCRRVAAYNPN 90

[Close]

BLAST of Spo17251.1 vs. NCBI nr
Match: gi|734316808|gb|KHN02290.1| (hypothetical protein glysoja_002314 [Glycine soja])

HSP 1 Score: 138.7 bits (348), Expect = 6.400e-30
Identity = 69/80 (86.25%), Postives = 71/80 (88.75%), Query Frame = 1

		  
Query: 33  EVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYKARERIHRRMA 92
           EVIQPHLPVRLPCYDFTPVTSPAF IP  AVKVTTSGMASSHSVTG VYKARERIHRR+A
Sbjct: 68  EVIQPHLPVRLPCYDFTPVTSPAFDIPFFAVKVTTSGMASSHSVTGSVYKARERIHRRLA 127

Query: 93  DRRLLAIPASCRRVAACNPN 113
           DR+LLAIP S RRV   NPN
Sbjct: 128 DRQLLAIPTSWRRVVTYNPN 147

[Close]

BLAST of Spo17251.1 vs. NCBI nr
Match: gi|1012327041|gb|KYP38790.1| (hypothetical protein KK1_039958, partial [Cajanus cajan])

HSP 1 Score: 136.7 bits (343), Expect = 2.400e-29
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 1

		  
Query: 23 TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK 82
          TQQALALPEKEV QP LPVRLPCYDFTPVTSPAF IPLLAVKVTTSGMASSHSVTGGVYK
Sbjct: 1  TQQALALPEKEVTQPPLPVRLPCYDFTPVTSPAFDIPLLAVKVTTSGMASSHSVTGGVYK 60

Query: 83 ARERIHRRMADRR 96
          ARERIHR MADRR
Sbjct: 61 ARERIHRHMADRR 73

[Close]

BLAST of Spo17251.1 vs. UniProtKB/TrEMBL
Match: A0A078E1E5_BRANA (BnaA04g06340D protein OS=Brassica napus GN=BnaC09g16540D PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.600e-46
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 1

		  
Query: 13  FGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMAS 72
           FG EAVSN NTQ+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFG PLLAVKVTTSGMAS
Sbjct: 3   FGFEAVSNLNTQEALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGTPLLAVKVTTSGMAS 62

Query: 73  SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 113
           SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN
Sbjct: 63  SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 102

[Close]

BLAST of Spo17251.1 vs. UniProtKB/TrEMBL
Match: A4QMB2_PINKO (ORF137 OS=Pinus koraiensis PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.600e-43
Identity = 91/97 (93.81%), Postives = 94/97 (96.91%), Query Frame = 1

		  
Query: 16  EAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHS 75
           +AVSN+  Q+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTT GMASSHS
Sbjct: 41  DAVSNEEAQKALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTWGMASSHS 100

Query: 76  VTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 113
           VTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN
Sbjct: 101 VTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 137

[Close]

BLAST of Spo17251.1 vs. UniProtKB/TrEMBL
Match: A0A151S2B1_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_029343 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.500e-41
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 1

		  
Query: 23  TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK 82
           TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK
Sbjct: 1   TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK 60

Query: 83  ARERIHRRMADRRLLAIPASCRRVAACNPN 113
           ARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 61  ARERIHRRMADRRLLAIPASCRRVAAYNPN 90

[Close]

BLAST of Spo17251.1 vs. UniProtKB/TrEMBL
Match: M1DI68_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400039021 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.300e-37
Identity = 83/95 (87.37%), Postives = 88/95 (92.63%), Query Frame = 1

		  
Query: 18  VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 77
           V ++ T+ A  +  +EVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT
Sbjct: 148 VGDKRTRTA-DIRRREVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 207

Query: 78  GGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 113
           GGVYKARERIHRRMADRRLLAIPASCRRVAACNPN
Sbjct: 208 GGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 241

[Close]

BLAST of Spo17251.1 vs. UniProtKB/TrEMBL
Match: A0A0B2NZ26_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_002314 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.500e-30
Identity = 69/80 (86.25%), Postives = 71/80 (88.75%), Query Frame = 1

		  
Query: 33  EVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYKARERIHRRMA 92
           EVIQPHLPVRLPCYDFTPVTSPAF IP  AVKVTTSGMASSHSVTG VYKARERIHRR+A
Sbjct: 68  EVIQPHLPVRLPCYDFTPVTSPAFDIPFFAVKVTTSGMASSHSVTGSVYKARERIHRRLA 127

Query: 93  DRRLLAIPASCRRVAACNPN 113
           DR+LLAIP S RRV   NPN
Sbjct: 128 DRQLLAIPTSWRRVVTYNPN 147

The following BLAST results are available for this feature:

BLAST of Spo17251.1 vs. NCBI nr
BLAST of Spo17251.1 vs. UniProtKB/TrEMBL
BLAST of Spo17251.1 vs. ExPASy Swiss-Prot
BLAST of Spo17251.1 vs. TAIR (Arabidopsis)

BLAST of Spo17251.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|674871096\|emb\|CDY63598.1\|	3.7e-46	96.0	BnaUnng00860D [Brassica napus]	[more]
gi\|145408582\|ref\|YP_001152206.1\|	2.3e-43	93.8	ORF137 [Pinus koraiensis]	[more]
gi\|1012337673\|gb\|KYP48942.1\|	2.1e-41	98.8	hypothetical protein KK1_02934...	[more]
gi\|734316808\|gb\|KHN02290.1\|	6.4e-30	86.2	hypothetical protein glysoja_0...	[more]
gi\|1012327041\|gb\|KYP38790.1\|	2.4e-29	94.5	hypothetical protein KK1_03995...	[more]

BLAST of Spo17251.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A078E1E5_BRANA	2.6e-46	96.0	BnaA04g06340D protein OS=Brass...	[more]
A4QMB2_PINKO	1.6e-43	93.8	ORF137 OS=Pinus koraiensis PE=...	[more]
A0A151S2B1_CAJCA	1.5e-41	98.8	Uncharacterized protein (Fragm...	[more]
M1DI68_SOLTU	1.3e-37	87.3	Uncharacterized protein OS=Sol...	[more]
A0A0B2NZ26_GLYSO	4.5e-30	86.2	Uncharacterized protein OS=Gly...	[more]

BLAST of Spo17251.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo17251.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0006119	oxidative phosphorylation
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0009853	photorespiration
biological_process	GO:0006554	lysine catabolic process
biological_process	GO:0034968	histone lysine methylation
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0015979	photosynthesis
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0005840	ribosome
cellular_component	GO:0030076	light-harvesting complex
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009573	chloroplast ribulose bisphosphate carboxylase complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0030785	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0018024	histone-lysine N-methyltransferase activity
molecular_function	GO:0004497	monooxygenase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo14104	0.86	Barchart \| Table
Spo25537	0.78	Barchart \| Table
Spo25004	0.77	Barchart \| Table
Spo11871	0.77	Barchart \| Table
Spo26127	0.76	Barchart \| Table
Spo09413	0.76	Barchart \| Table
Spo08440	0.75	Barchart \| Table
Spo02851	0.71	Barchart \| Table
Spo24775	0.71	Barchart \| Table
Spo16490	0.70	Barchart \| Table
Spo24720	0.70	Barchart \| Table
Spo25555	0.70	Barchart \| Table
Spo06201	0.69	Barchart \| Table
Spo05875	0.69	Barchart \| Table
Spo16485	0.69	Barchart \| Table
Spo13959	0.69	Barchart \| Table
Spo11904	0.68	Barchart \| Table
Spo06200	0.68	Barchart \| Table
Spo17924	0.68	Barchart \| Table
Spo24707	0.68	Barchart \| Table
Spo04277	0.67	Barchart \| Table
Spo04278	0.66	Barchart \| Table
Spo24708	0.66	Barchart \| Table
Spo25538	0.65	Barchart \| Table
Spo19561	0.65	Barchart \| Table