Spo17373 (gene)

Overview
NameSpo17373
Typegene
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S18
LocationSpoScf_00146 : 428841 .. 431691 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCAATTAAGGGTATTGGCCGTCGTTACGCCAACATTTGTTGCAAGAAGGCCGACATCGACATGAACAAAAGGTTTAATTTTTTTTCTCCAAAACTAATATTTTTAGCACAATATTCATCATTTTATTTATGGGGTTGATGTTTTTTTTATTAATTTTTTTTATAGAATGTTGAATGTAGAACATTACATGTCTATAAATAAAAAAAAAAGCAAAAAGAACATTAGATATCTGGGAATGTTATTATTTAGGATAATTCTTAATTTATACTGCTCGTTTATTGATGATTGTTTTTGGGTCTGTTGATTGCTCTTAATTTAGGAATCAATTTGCTGCATCTTGTATTTTAGCATAATTATTATGGAATTTTTTTGGGGTTTTGGAGTTTGTAGCTCTGCTACTTTATAATTTTTTGTTGTTTTAGAAAATTCAACATAATGTTTGTGATACGGAGTATTAATCATGCTTGATGCTTATTGTTACGGCTGTATGAACTTCGATTTTGTTGGTTAAATGATGTTGGGAGGTTAAGCCTGATGCTGTTTTTATTCATCTGTCTTTGTCAGAATAATGTAAATATACACAATGTGTCAAGTGTAATGTTATGATTACTGCCATTGAGTAGAATATTAGCTTTTAGATTTAGAATACTCAGAGCCTGATTGCAGAGGTAACAGAGTAGAATTGCTTCTTCTATTTCATTGTTAGTTTAGTTGGCTACAAGTCTGTTGATTTTAAATATCGTTGGCCTGGTTTATCACAGTTGTGTAGAGAAGCTTATTCAGGTTTTGAAGTTTTTGATGCCCAATTTTTGTCGAATTTGGGCATTTGGTCATTGTCTTGGTTTGAACTTCTGTCTCTGGACGTGTTGTTCCACTGTAGATTGTAGAAGTTGGATTTTTCACTATGCTATCTCAAATCCTTGGTGTATAGCCCTTGCCTAATTCTTCCGTTGCAACAATCCTGTTTTGCTCTGCATTGTTTTTGTGTATCGGTTATCAAAGGGTTTTTTAATTAATGAAGTTGAAGTTTATTTTCATCATTAAGCTGTCTACAAATCAATGCGCATCATCCTTCTAACATTGCTTCGAGCAATAATTCTCTGGAAGGGAAAAACGACTATTTCTCTTCATTTTTAGTCTACCTTCCTCATTATTTGTTTTATATGGATAGGTACTACAAATTGACTGCCTCCCGAACCCTTAGAAATATTATGGGGTGACCTTACTTCTTCAAATAGTTAGCCATTGCTTAGTTTTAAAAGGCGCACTTAAAGCTCTGATAGCTCGGAAGTTCACAGAAGAACCCTTTTGCGCGCGCTTCCTTGCCCTTCTTTTTAATTAAAAAATAAAGCCACGTGACTCTAATCTTCTTTTTTTAAGTATCACGAGATTTTTTTTTTCTAAAAAAGCGAATATTTGGGGGTTTGAAAACCCTAGTGCAATTTTCTCCCGTAGCTGAATTTCTCTAGCCTTCTCGCCGGATTTCTCCGGTTGGATTCTGAATTTTTCTTTCATCTTTTCGATTTCTCTTTTTCTTGTCATCTTTTCTTTCCATATTTTCTCCTTCTTTTCTGAACTTTAAAATTTTTATTTTTTCTTTCCTGGTGCGCTTCGCCTGCGAAAAGCATGCGCTTTGCGCTTAAGCTCCCGGACCCTTTTGCGCTTCGGTGCGCTTCGCTCTTTTAAAACTAAGAGCCATTGTAGTGCCAGGAGGATGGGCAGCAAGTCAGCAATGCAAGTCTAGATTTTGGCTGTAATGGCTCTTCTTTAAAGAAGAGGGTTGTGGTTGTGCCGAATGTACCTTTTTAACTTGTTGGGTGACTCAGGCCTGTGATATTTGGTGCTGAGCAACAGTTTGTGGGTTCCTTATAGTCGAACTTCTGATTTATGGCCTTCAATTTTTCTTTGTAAAACCTCTTTTGTCCTAGTATAATACGTGTTTGTGCGCATTGAACAGGAATTTTCAGAGGCCAATCAAGAGCATAATTGTATAACTGATTCTGGTGTTTTGCATATGTATCTGTTTCATTGGGGTTTGTCTATTCTGTACTTCAGTACGTCAATTTAATAAGGCATAATAATTGACCGAATGAAGATAACTTTGAAACTTGCACTTTTAATCCTTTATGCTTATAGCATCCACTTATATGCGATGCTGAGAAATATTGGAGAGTTCATAGCAGTCAGAAATAGAGGTTCTTGTTGATAAAAAATGATGCGATGCTGAGAAATATTGGAGAGTTCATAGTAGTCAGAAATAGAGGTTCTTGTTGATGAAAAATGAGATATGGGGGTTCTTACTTCTTAGTGATATGAAATTAGACACTTCGAGTCCCCGAAGTATGCATATCTTTGCATACTATGAATGCATTAAATGGTTTCTGCTCTAGAACTTGTTTTTTTATGAATATCTTCCTGTGGTTTTCATATATAGAAGCTATCTCTAATCTGCAAACTTTGCTGCAGGGCTGGTGAACTGACAAATGCAGAGCTAGAAACTTTGATGACAGTTGTAGCAAATCCTAGGCAATTCAAAGTCCCAGACTGGTTTCTCAACAGACAGAAGGACTACAAGGATGGAAGATACAGTCAGGTTGTTTCTAACCAACTTGACATGAAACTCAGGGATGACCTTGAGCGTCTGAAGAAGATCAGGTGTGTTTTCTTTTACTGAATGCTTCATGTTACCATTGCTCTATGATACAAAATGCCTTTTTAACATTTTGAAAAACCTTGCAGAAACCACCGTGGTCTCCGTCACTACTGGGGTCTGAGAGTGCGTGGACAGCACACCAAGACTACTGGACGTAGGGGAAAGACTGTTGGTGTCTCCAAGAAGCGTTGA

mRNA sequence

ATGACTTCAATTAAGGGTATTGGCCGTCGTTACGCCAACATTTGTTGCAAGAAGGCCGACATCGACATGAACAAAAGGGCTGGTGAACTGACAAATGCAGAGCTAGAAACTTTGATGACAGTTGTAGCAAATCCTAGGCAATTCAAAGTCCCAGACTGGTTTCTCAACAGACAGAAGGACTACAAGGATGGAAGATACAGTCAGGTTGTTTCTAACCAACTTGACATGAAACTCAGGGATGACCTTGAGCGTCTGAAGAAGATCAGAAACCACCGTGGTCTCCGTCACTACTGGGGTCTGAGAGTGCGTGGACAGCACACCAAGACTACTGGACGTAGGGGAAAGACTGTTGGTGTCTCCAAGAAGCGTTGA

Coding sequence (CDS)

ATGACTTCAATTAAGGGTATTGGCCGTCGTTACGCCAACATTTGTTGCAAGAAGGCCGACATCGACATGAACAAAAGGGCTGGTGAACTGACAAATGCAGAGCTAGAAACTTTGATGACAGTTGTAGCAAATCCTAGGCAATTCAAAGTCCCAGACTGGTTTCTCAACAGACAGAAGGACTACAAGGATGGAAGATACAGTCAGGTTGTTTCTAACCAACTTGACATGAAACTCAGGGATGACCTTGAGCGTCTGAAGAAGATCAGAAACCACCGTGGTCTCCGTCACTACTGGGGTCTGAGAGTGCGTGGACAGCACACCAAGACTACTGGACGTAGGGGAAAGACTGTTGGTGTCTCCAAGAAGCGTTGA

Protein sequence

MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKDYKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo17373.1Spo17373.1mRNA


Homology
[Close]
BLAST of Spo17373.1 vs. NCBI nr
Match: gi|902221303|gb|KNA18890.1| (hypothetical protein SOVF_066930 [Spinacia oleracea])

HSP 1 Score: 251.1 bits (640), Expect = 9.700e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD
Sbjct: 30  MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152
[Close]
BLAST of Spo17373.1 vs. NCBI nr
Match: gi|731374327|ref|XP_010666932.1| (PREDICTED: 40S ribosomal protein S18 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 243.8 bits (621), Expect = 1.600e-61
Identity = 119/123 (96.75%), Postives = 121/123 (98.37%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRRYANICCKKADIDMNKRAGELT AEL+ LMTVVANPRQFKVPDWFLNRQKD
Sbjct: 30  MTSIKGIGRRYANICCKKADIDMNKRAGELTAAELDNLMTVVANPRQFKVPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDGRYSQV+SNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGRYSQVLSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152
[Close]
BLAST of Spo17373.1 vs. NCBI nr
Match: gi|731361198|ref|XP_010692226.1| (PREDICTED: 40S ribosomal protein S18-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 241.9 bits (616), Expect = 5.900e-61
Identity = 117/123 (95.12%), Postives = 121/123 (98.37%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRRYANICCKKADIDMNKRAGELT AEL+ LMTVVANPRQFK+PDWFLNRQKD
Sbjct: 30  MTSIKGIGRRYANICCKKADIDMNKRAGELTAAELDNLMTVVANPRQFKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDGR+SQV+SNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGRFSQVLSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152
[Close]
BLAST of Spo17373.1 vs. NCBI nr
Match: gi|922352409|ref|XP_013452021.1| (ribosomal protein S13P/S18e [Medicago truncatula])

HSP 1 Score: 239.2 bits (609), Expect = 3.800e-60
Identity = 115/123 (93.50%), Postives = 121/123 (98.37%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRR+ANICCKKAD+DMNKRAGELT AELE +MTVVANPRQFKVPDWFLNR+KD
Sbjct: 30  MTSIKGIGRRFANICCKKADVDMNKRAGELTAAELENIMTVVANPRQFKVPDWFLNRKKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDG++SQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152
[Close]
BLAST of Spo17373.1 vs. NCBI nr
Match: gi|217071380|gb|ACJ84050.1| (unknown [Medicago truncatula])

HSP 1 Score: 238.8 bits (608), Expect = 5.000e-60
Identity = 115/123 (93.50%), Postives = 121/123 (98.37%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRR+ANICCKKAD+DMNKRAGELT AELE +MTVVANPRQFKVPDWFLNR+KD
Sbjct: 30  MTSIKGIGRRFANICCKKADVDMNKRAGELTVAELENIMTVVANPRQFKVPDWFLNRKKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDG++SQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152
[Close]
BLAST of Spo17373.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHD4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_063420 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 6.800e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD
Sbjct: 30  MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152
[Close]
BLAST of Spo17373.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B411_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_005520 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.100e-61
Identity = 119/123 (96.75%), Postives = 121/123 (98.37%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRRYANICCKKADIDMNKRAGELT AEL+ LMTVVANPRQFKVPDWFLNRQKD
Sbjct: 30  MTSIKGIGRRYANICCKKADIDMNKRAGELTAAELDNLMTVVANPRQFKVPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDGRYSQV+SNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGRYSQVLSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152
[Close]
BLAST of Spo17373.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BJ24_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g019050 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.100e-61
Identity = 117/123 (95.12%), Postives = 121/123 (98.37%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRRYANICCKKADIDMNKRAGELT AEL+ LMTVVANPRQFK+PDWFLNRQKD
Sbjct: 30  MTSIKGIGRRYANICCKKADIDMNKRAGELTAAELDNLMTVVANPRQFKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDGR+SQV+SNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGRFSQVLSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152
[Close]
BLAST of Spo17373.1 vs. UniProtKB/TrEMBL
Match: G7IEW7_MEDTR (Ribosomal protein S13P/S18e OS=Medicago truncatula GN=MTR_6g043210 PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 2.700e-60
Identity = 115/123 (93.50%), Postives = 121/123 (98.37%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRR+ANICCKKAD+DMNKRAGELT AELE +MTVVANPRQFKVPDWFLNR+KD
Sbjct: 30  MTSIKGIGRRFANICCKKADVDMNKRAGELTAAELENIMTVVANPRQFKVPDWFLNRKKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDG++SQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152
[Close]
BLAST of Spo17373.1 vs. UniProtKB/TrEMBL
Match: B7FH21_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.500e-60
Identity = 115/123 (93.50%), Postives = 121/123 (98.37%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MTSIKGIGRR+ANICCKKAD+DMNKRAGELT AELE +MTVVANPRQFKVPDWFLNR+KD
Sbjct: 30  MTSIKGIGRRFANICCKKADVDMNKRAGELTVAELENIMTVVANPRQFKVPDWFLNRKKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDG++SQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152
[Close]
BLAST of Spo17373.1 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.500e-59
Identity = 110/123 (89.43%), Postives = 118/123 (95.93%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           +TSIKGIGRR ANI CKKAD+DMNKRAGEL+ AE++ LMT+VANPRQFK+PDWFLNRQKD
Sbjct: 30  LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDG+YSQVVSN LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152
[Close]
BLAST of Spo17373.1 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 5.900e-53
Identity = 96/123 (78.05%), Postives = 115/123 (93.50%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           +TSIKG+GRRY+NI CKKADID++KRAGEL++ E+E L+T++ NPRQ+K+PDWFLNRQKD
Sbjct: 30  LTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
            KDG+YSQV++N LD KLR+DLERLKKIR HRGLRHYWGLRVRGQHTKTTGRRG+TVGVS
Sbjct: 90  VKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVS 149

Query: 121 KKR 124
           KK+
Sbjct: 150 KKK 152
[Close]
BLAST of Spo17373.1 vs. ExPASy Swiss-Prot
Match: RS18_ARGIR (40S ribosomal protein S18 OS=Argopecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.100e-51
Identity = 93/123 (75.61%), Postives = 114/123 (92.68%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MT+IKG+GRRYAN+ CKKAD+D+ KRAGEL+  E+E ++T+++NPRQ+K+P+WFLNRQKD
Sbjct: 30  MTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
            KDG+YSQV+SN LD KLR+DLERLKKIR HRGLRHYWGLRVRGQHTKTTGRRG+TVGV+
Sbjct: 90  VKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVA 149

Query: 121 KKR 124
           KK+
Sbjct: 150 KKK 152
[Close]
BLAST of Spo17373.1 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.100e-50
Identity = 92/123 (74.80%), Postives = 113/123 (91.87%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           +T+IKG+GRRYA++  +KADID+NKRAGELT  E+E ++T++ NPRQ+K+PDWFLNRQKD
Sbjct: 30  ITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
            KDG+YSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTTGRRG+TVGVS
Sbjct: 90  IKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVS 149

Query: 121 KKR 124
           KK+
Sbjct: 150 KKK 152
[Close]
BLAST of Spo17373.1 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 6.100e-50
Identity = 91/123 (73.98%), Postives = 111/123 (90.24%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           MT+IKG+GRRY+NI  KKADID++KRAGE T  E+E ++T+++NPRQ+K+PDWFLNRQKD
Sbjct: 30  MTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
             DG+YSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQHTKTTGRRG+TVGVS
Sbjct: 90  IVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVS 149

Query: 121 KKR 124
           KK+
Sbjct: 150 KKK 152
[Close]
BLAST of Spo17373.1 vs. TAIR (Arabidopsis)
Match: AT1G22780.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 229.9 bits (585), Expect = 8.200e-61
Identity = 110/123 (89.43%), Postives = 118/123 (95.93%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           +TSIKGIGRR ANI CKKAD+DMNKRAGEL+ AE++ LMT+VANPRQFK+PDWFLNRQKD
Sbjct: 30  LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDG+YSQVVSN LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152
[Close]
BLAST of Spo17373.1 vs. TAIR (Arabidopsis)
Match: AT1G34030.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 229.9 bits (585), Expect = 8.200e-61
Identity = 110/123 (89.43%), Postives = 118/123 (95.93%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           +TSIKGIGRR ANI CKKAD+DMNKRAGEL+ AE++ LMT+VANPRQFK+PDWFLNRQKD
Sbjct: 30  LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDG+YSQVVSN LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152
[Close]
BLAST of Spo17373.1 vs. TAIR (Arabidopsis)
Match: AT4G09800.1 (S18 ribosomal protein)

HSP 1 Score: 229.9 bits (585), Expect = 8.200e-61
Identity = 110/123 (89.43%), Postives = 118/123 (95.93%), Query Frame = 1 

		  

Query: 1   MTSIKGIGRRYANICCKKADIDMNKRAGELTNAELETLMTVVANPRQFKVPDWFLNRQKD 60
           +TSIKGIGRR ANI CKKAD+DMNKRAGEL+ AE++ LMT+VANPRQFK+PDWFLNRQKD
Sbjct: 30  LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKD 89

Query: 61  YKDGRYSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 120
           YKDG+YSQVVSN LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS
Sbjct: 90  YKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVS 149

Query: 121 KKR 124
           KKR
Sbjct: 150 KKR 152
The following BLAST results are available for this feature:
BLAST of Spo17373.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902221303|gb|KNA18890.1|9.7e-64100.hypothetical protein SOVF_0669... [more]
gi|731374327|ref|XP_010666932.1|1.6e-6196.7PREDICTED: 40S ribosomal prote... [more]
gi|731361198|ref|XP_010692226.1|5.9e-6195.1PREDICTED: 40S ribosomal prote... [more]
gi|922352409|ref|XP_013452021.1|3.8e-6093.5ribosomal protein S13P/S18e [M... [more]
gi|217071380|gb|ACJ84050.1|5.0e-6093.5unknown [Medicago truncatula][more]
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BLAST of Spo17373.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RHD4_SPIOL6.8e-64100.Uncharacterized protein OS=Spi... [more]
A0A0J8B411_BETVU1.1e-6196.7Uncharacterized protein OS=Bet... [more]
A0A0J8BJ24_BETVU4.1e-6195.1Uncharacterized protein OS=Bet... [more]
G7IEW7_MEDTR2.7e-6093.5Ribosomal protein S13P/S18e OS... [more]
B7FH21_MEDTR3.5e-6093.5Putative uncharacterized prote... [more]
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BLAST of Spo17373.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS18_ARATH1.5e-5989.440S ribosomal protein S18 OS=A... [more]
RS18_BRABE5.9e-5378.040S ribosomal protein S18 OS=B... [more]
RS18_ARGIR1.1e-5175.640S ribosomal protein S18 OS=A... [more]
RS18_DANRE2.1e-5074.840S ribosomal protein S18 OS=D... [more]
RS18_SPOFR6.1e-5073.940S ribosomal protein S18 OS=S... [more]
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BLAST of Spo17373.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G22780.18.2e-6189.4Ribosomal protein S13/S18 fami... [more]
AT1G34030.18.2e-6189.4Ribosomal protein S13/S18 fami... [more]
AT4G09800.18.2e-6189.4S18 ribosomal protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001892Ribosomal protein S13PIRPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 1..123
score: 9.6
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 1..113
score: 7.0
IPR001892Ribosomal protein S13PROFILEPS50159RIBOSOMAL_S13_2coord: 1..116
score: 29
IPR010979Ribosomal protein S13-like, H2THunknownSSF46946S13-like H2TH domaincoord: 1..123
score: 2.52
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 92..105
scor
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.10coord: 77..120
score: 1.3
NoneNo IPR availableGENE3D1.10.8.50coord: 1..54
score: 2.0
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 1..123
score: 1.2
NoneNo IPR availablePANTHERPTHR10871:SF640S RIBOSOMAL PROTEIN S18coord: 1..123
score: 1.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0006508 proteolysis
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0001510 RNA methylation
biological_process GO:0006522 alanine metabolic process
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0070981 L-asparagine biosynthetic process
biological_process GO:0042545 cell wall modification
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0048481 plant ovule development
biological_process GO:0006431 methionyl-tRNA aminoacylation
biological_process GO:0006555 methionine metabolic process
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005840 ribosome
cellular_component GO:0005829 cytosol
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0004825 methionine-tRNA ligase activity
molecular_function GO:0003924 GTPase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0050897 cobalt ion binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
RNA-Seq Expression