Spo17520 (gene) | SpinachBase

Overview


Name	Spo17520
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr1 : 2726330 .. 2731288 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGAGGTCAGGGATTTCTTATCCTTGATTCCCGGTCAAAAACCAGAAGACCGACCTGATATTATCGCTCGAGTTTTCAAGATAAAGCTTGATGAACTGATGGTGGACCTCACCAAAAGAAATATTTGCGGCCGCACTAAAGCAGGTAAATATAATCCAATTTTTTACAAAAACATATATGTCCAATTAGAAACTAAACACTTTAAAATGTTCTACATATATGCATGCGCTCCGTTTGTGTTTGGGTTAATGTGGCATATGTTATTATATTATGTCTTATAAGTTAATAATATATTGTGCCTTCCAAAAATCAGTTTTCACTCAAAAATGTTATATATAGCATGCGCTCCATTACTTTTTTGGGTAGATGTCGCATATGTTATTATATTTTGTCTTATAAGTTCATAATATATTGCCCCTTACATAAATCAGTTTACACTACAAAATGTTCTATATATACATATATAGAAATAAATATATCATATATAGTGCCCTCAATCTTCGCCCTGCCATTAATATCTTCCGTTTGCGGATTAATTACCCCCCTTCGAAATAAATAACTTCTAAACCCCTGTCTCCTGTACACTTTGCTACCCAAATCATTTATTGGGGTTTAGGGATTTTTATTCTGCTTAAAGGTGCCTTCTGCAAAATGTGCGTTATTGATCGATTCTCGAAATGTCTGATCGTCTACTGCTTAATTCATAAGGTGAGTAGTCAGGTGTACTTTTATTTGCTCGCCTTCCTTATTTATGCATGTTTAAGGAAAGTGTTTGTGTGTACAGTGTACTATTATAGTTGGGTTTGTCACAAGTTTTTGTATCAATGTATCATACTATGCTATGATTGTGTGATGCAAAGTGGGAGTTATTTATTAAATTTTGGTTGCCTATTCACAATCTGTATGCACTTCAATTTGCAGTATACAATTCCATTTGTCTTAGTCATTCTTGAAATGCCCAGTCGCTGCAATCTAGGAACATTGTATATGGATGGAAGTTTGGGTCTAATTTAGGAAACAGGTGTAATGAGAACTCATGCACACCAATACTGTCTTGGGTTGATGTGGCATACGTTATTACCTTATGTCTTATCGGAATAAAAGTTTACAACACAAAAGTACCATTGCTATTCTAACAATCTGTACCATCTTGCAGCAATATACACAATCGAGTTCCAAAAACGAGGCCTCCCACATGTTCATATGTTGTTGTTTTTGCAAGAACCGGACAAACTACGGACTGCAGCGGACATCGATCGACTAATTTCAGCAGAATTACCAGACCCGGAAGAGGACCCAGTTGCATTCGAGGCGGTAGTCCAATACATGACTCATGGACCGTGTGGTACGTTGAACCCAAAATGTCCATGTATGCATGATGGGCGTTGTACAAAGTACTATCCTAAAGACTTCAACGACGACACAATCATTGGAGAAGACGGTTACCCACAATACAGAAGAAGAAACAATGGTCGGGTAGCACAAAAGAATGGCCACACAATTGATAATACCTTCATTGTGCCATACAATGTGGACTTGCTGGTGAAGTATCAAGCACACATCAACGTCGAAGTATGCAAGAAATACACATGTACCAAATACCTGTTCAAGTACATGAAAAAGGGTCCAGATATGGCACTAGCAACAGTTCAAGAAGTCACAGATAGTGGAATACCAGGAGGACAACAAGCCAATCCTGAACCCCCAAGAGACGAGATAAAATCGTACTTGCAATGCANCCAGGAGGACAACAAGCCAATCCTGAACCCCCAAGAGACGAGATAAAATCGTACTTGCAATGCAGATATGTATCTGCTGCAGAAGCATGCTGGAGAGTATTTGGCTTCCCAATACAATATAAATACCCCCCAGTTCAACGCTTAAGTTGTCACCTAGAGGAAGAACAAATAGTGATGTTTGAAGATCATGAGCCACTGGATCAAGTGCTTGAAAGAGTAGGACCAGCAAAGACTCCTCTCACCGGATGGATGGAAGCAAATAGGAAGTACCCANTGAAAGAGTAGGACCAGCAAAGACTCCTCTCACCGGATGGATGGAAGCAAATAGGAAGTACCCAGAAGCAAGAAAACTGACATACCACGATTTCCCAACTGAATGGGTATGGCAAAGCAAGGAAAGGAAATGGAAAGGAAGAGATGAAGGCTTCAAAATAGGGAGGATTTACTACGTCCACCCAGCATCAGGGGAGCTTCACTACTTACGTATGCTCCTTAATATAGTGACAGGATCAACAAGCTTTGCAGATATAAGAACAGTAAATGGCGTAGAATTTGCCACATTCAAGGAAGCTTGCAATGCTTTAGGGCTTCTAGAAGGAGATAGTGAATGGCATGAAGCTCTAAAGGCTGCGTCATCTTGGGCTCATGCCCCACAACTTAGAGAGTTGTTCGCCACAATCTTAATCTTCTGTGAAGTAACAAGTCCCAGTGACCTATGGGAGAAAAATTGGGAGCTACTATCAGATGATGTCCAATACCGGCAACGCAAGAGGTTTAATTCTCCAAACATTGTGCTAACAACAAACCAAGTGCAAAACTACGCATTATATGAGATAGAATTGATCCTTAACAGAAATAACAGGAGCCTCACGAACTATGGAAGTATGCCATTCCCGGACATGTCTTTGGTGCAACAAACATCAAACAGATTGATATTGGAAGAGCAAATGTTTGACATCGCAACTCTAGCAGACGAAGCATCTAATCTAGAAGCAGGCCTAAATCCAGAACAAAGCTCTGTGTACCATCAGATACTAGAAGTAATAGAAAATAGAATAGGGGGGGTATTCTTCATTTATGGTAGCGGAGGCACAGGGAAGACATATTTGTGGAGCACCCTAATATCAAGAATTAGATCTCAAGGTCATATTGTAATCGCAGTGGTATCATCTGGAATTGCAGCATTATTACTTCACTGTGGAAGGACGGCACATTCACGCTTCAGCATCCCAATACATTTAAATGAGAACTCATGTTGCAGGATACCGCAAGGCTCAAACTTGGCATTTCTGATCCAAAGAGCAAGGCTTATAATATGGGATGAAGCTCCCATGGTCCACAGGCATGCCTTTGAGGCAGTGGACCGCACTCTACGTGATATTATGCAGACAGTAAACCCAAGCGCTTCAGACAGGCCATTTGGAGGAAAGACGGTTGTATTAGGAGGCGATTTTAGACAAATCTTACCGGCGGTGCCACGAAAAGGAAGAGAAGACATTGTTGATGCATCGGTCAGTAGGTCTCCAACAATATGGCCTCATTGCATCATGTTTAAGCTGACTACAAACATGAGATTGCGGGGAAGCTCAACCACTGTTGGATTAGAACAAATGCAGGCTTTTAGCAAATGGGTCCTAGATGTGGGTGATGGAAAAATACCTACTACTGCCAAAAACGGGGAAGATGAGGGCAGTTGGATTCAAATACCAACTGACCTACTGGTAAAAGACCATGAAGATAACAAGGTAGCCCTTGTGGAAGAAATATATCCAGACCTTCTTCACAACTACAGAGACATCAAATACCTTGCTGAAAGGGCGATTTTAGCACCTAAAAACGAATATGTAGATGAAATAAACAACTACATTCTCTCGATGATTCCAGGAGTGGAAGGTGTATATAAAAGTGCTGATAGAGTAAGCCCCCTCACAAATAGAAGCTCAGTCGATGAAGATCTATACCCAACAGAGTTCCTCAACACACTGCAATTCCCCGGCATCCCAAATCATGAGATACGACTAAAGGTAGGTTGCCCAATAATCCTACTTAGAAACATCAACCAGGTTGAGGGATTATGCAATGGAACAAGGCTCATCATAACACGGTTGGAAGCAATTGTAATTGAAGCACAAGTGGTAACCGGGAAGAATGTAAGACGCAGAGTGTCCATTCCCTGGGTAGAGATGACACCGTCTAATCACGCACTGCCATTCACTATGAAGCGCAGACAATTCCCCGTCAAGGTATGCTTTGCAATGACAATCAACAAAAGCCAAGGTCAAACGTTCAACCGCGTAGGTGTGTATTTGCCAGAGTCCGTCTTCATCCATGGACAACTATATGTGGCTGTCTCTAGAGTCACTTCTCGATCTGGTCTCAGAATTTGTATAGGACGCCATGGAAACGACACGGAAAACTCTACAGAAACAAAGAATGTAGTGTACAGAGAGATTTTTGACGATGTATAAAAATAAAAATAAAGAAGAAAGTCCATTCTATCCACAAGTGTAACAAAACCAAACCAAAGGATGGGAACTTGCATAAATATGTAGTACGCCCTATTCTTCTAATACGTGTAATGTTTCTCTCGCATCTTTCAATAAAATGAATAATATGGTTACAAATCCACAGCTTTATTTATTTCATATGTCCTGCAATTCATTTCTAATCTGCTTATACGCTTACTTAACATGTCAAGAAAACAACTCCTAAACTAACATCTGATGCATTTTTCAGGAACAACAGGCCTGCAAGTAGAACAGAATAGAGTTACAGAATGGGGCTATGTATTCCTTTCATACTTCAGAGAAACCAAGGGCAATGTTGTCACTCGTGGGGGACAAAGCAGACTAAGAAGCAGAAACAAAAGTACGCAAATATTCAAGATGTGAATTAGAATTTAGAAAGTGAGTATAAAAATCAGATTACTCATTCCCCTATTTCATAGAACAGGTTTATGATGTTATGTGAAGTCTTTGCATATGACTCCATAAAGAAGGGACCATTATCTTAATTAAGAAGTTAAATGATCTAGAGGCTACATGTGCGGACTGCCTTAGTTAAAGTGCCCAAGTTCTTGTGGTAGCAGCATATACCTATCCATTCTTCAACTCAAAAGAATTTATGTTCATTATTTTACAGCTTTATATCTTATCTGTGAATCGTTGTACTTGCAGGAAGACTCATATGAAGGGAATGCTACGCAAAAAGCCTGA

mRNA sequence

ATGGCTAGAGGAACAACAGGCCTGCAAGTAGAACAGAATAGAGTTACAGAATGGGGCTATGTATTCCTTTCATACTTCAGAGAAACCAAGGGCAATGTTGTCACTCGTGGGGGACAAAGCAGACTAAGAAGCAGAAACAAAACTTTATATCTTATCTGTGAATCGTTGTACTTGCAGGAAGACTCATATGAAGGGAATGCTACGCAAAAAGCCTGA

Coding sequence (CDS)

ATGGCTAGAGGAACAACAGGCCTGCAAGTAGAACAGAATAGAGTTACAGAATGGGGCTATGTATTCCTTTCATACTTCAGAGAAACCAAGGGCAATGTTGTCACTCGTGGGGGACAAAGCAGACTAAGAAGCAGAAACAAAACTTTATATCTTATCTGTGAATCGTTGTACTTGCAGGAAGACTCATATGAAGGGAATGCTACGCAAAAAGCCTGA

Protein sequence

MARGTTGLQVEQNRVTEWGYVFLSYFRETKGNVVTRGGQSRLRSRNKTLYLICESLYLQEDSYEGNATQKA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo17520.1	Spo17520.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo17520.1 vs. NCBI nr
BLAST of Spo17520.1 vs. UniProtKB/TrEMBL
BLAST of Spo17520.1 vs. ExPASy Swiss-Prot
BLAST of Spo17520.1 vs. TAIR (Arabidopsis)

BLAST of Spo17520.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo17520.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo17520.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo17520.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0000723	telomere maintenance
biological_process	GO:0009987	cellular process
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0009536	plastid
cellular_component	GO:0005657	replication fork
cellular_component	GO:0016020	membrane
molecular_function	GO:0003678	DNA helicase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16527	0.92	Barchart \| Table
Spo16526	0.91	Barchart \| Table
Spo24547	0.78	Barchart \| Table
Spo05342	0.74	Barchart \| Table
Spo17222	0.71	Barchart \| Table
Spo17519	0.69	Barchart \| Table
Spo11890	0.68	Barchart \| Table
Spo19969	0.66	Barchart \| Table