Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AGTAACAAATTGTCTACTCCCTTCAATTCAGTTGTGTTGCGACTTGCGAGGGATTTTAGAATTCGTTTAAGCCTTTAACTTTTATCAATGGCTTCTTCCCTACCCTCAGCTGGATTGATGAACAACCCATCAATATCTTTCCCAAAAATCCAAGCCAACTCCAATAAATCTCCATCATTTGCTAATTTTGCTCAGAAAAGCCCCAAATTTCTGAAGTTGGTCAATCTGAAAAGGGTGATTAGAGCATCAGCAGCTTCAAATGGGTCTCCAGGGCTTTACTCTTCCAAGCAATTGGAGTTAACAGTGAAGAACGTTGACCTGGTTTTGGAAGATGTACGACCTTATCTCATTTCTGATGGTGGAAATGTTGATGTTGTGTCCGTTCAAGATGGAGTCATAACCCTTGAACTTCTAGGTTTCCTCTTCTCTTCTATTCATTTTCAATTGAAATACCTTCTTCTTTTTTGCATATTTGGTTTTTGATTATCAATTTTTTCGTTCAATCCCATTTGATAAGCTGTTGATCATCATTGATTTAATTGCCTTTTTAGTTTTAGAATTTTCATACCATTACATATGGGTGTGTGCAAAGGTGAAGTCTTTGATCATGGTTATGTGTTTTCTGTTGTTAATTTATCAAAGTTCCTTGATTAGGGGTTATGCTGTTAGGTTTTTGTTAACTAAACTTGCCTATTCAAGGTTCATATTTGGGTTTGGTTATCAATTTTTCTTTTAATCCATTTGATAAGCTGTTGATCAGCATTGATTTAATTGCCTTTATAGTTTTTGAAGTTGTCATACTATTATATATGGGTGTGAGCAAAGGTGAAGTCTTTGATCATGATTATGTGTTTGCTGTTGTTAATTCAATAATTCATCCAAGTTCCTTGAGTAGAGGTTATGGTGTTAGGTTTTTGTTAATGAACTTGCCTATTCAAGGTTCATTTAGGTTTATATGTGCGAAATTCGTCTGCTATTTGAAAGCATTCCATAATTTGCAGTCAATGTGATATTGTTTTTGGCTGCCTATTTCATGAAAAGGTATGTGACCTTGGCGATTTGAGGTGTTAATTATAGGAGGAGAGTCTATGGTGCTCATTGACATTTGAGAGTATGGTAGTGAGATGCAATGGACAAGCAATTAGGACGAGTGATTAAGCGGTTGGATCCCATAACATGAACAAGGAGAAAATAATTGTAATCGGATTACTTTATGAATACATGAGTATATACATGTATATATAACTGTTGCAGGGGGACTACAGTGCAACAGATTAACAACCTAATTGATGTCACATTGTCCTATTTGTTATGTGATACGGAATTTTCAGAATGTCAACTGATTTGTTTTGTTAATTACCTCATTTGAGCATCATTAAGCTTGATGTGAATTTGTCCTATTTGTTTATGCTAATTGTATGAATCAGTGTGCTGCATTTTCTTGACCAATAACTTGGAGATTTTAACCTTTCTTGGACAATCTTCTTCATCAACTAGAGAAACACGGGGTTATGGTCTATTTAGGATCTGTTGGATAATTTACAGGAACATAGGCTTCAAATGTTCAGTTATGCTCGATTTTTTTTTTCTACCTTCGCCTTTTCTTCCCTTCTTCGCCTTTATTAAGGCTTTAGTTTTTTTTTTGTCTACTTGGTTGATTTGTATGTTCCGTCTGCTCTGATCAAGTTTGAGGCCTGTACTTGTCCAAAAATTTGAAAATTTTACCCATTCTTGAACCCTCTACAATGTAGATTTCCATACCACAGCACTGAAAATTGTAAATTACATGTTAGGTTTGTCTTAATCACCTAAATTTATTCCACTCCCGCCGCCCTACAATAAACTTCGCGGGTGACTTTGTCTTCGTCACTTATGATTTCAGTAGATGTAAAGAATAAAATAATCAAGAGAAAGTCTTATGATTGAGAGAGAAACGGTACTATTCGAACCATTCATTTATAAGGGATTTTAATGGAAAGCAAAAGAGGATTATCATGGTTTTTTCAATTATAGTAATTTAAAAGTATACTGTTCTTGAAGTTTTGTAAATTTGATTTGGTAAATTCATATTGCATGACAGGAGCATGTGAGAGTTGTCCGAGCTCAACCACCACCATGAAAATGGGCATTGAAAAAGTTCTGAAAGAGAAGTTTGGAGATGCAGTCAAGGATATTCGTCAAGTCAATGAAGTACAAGTGAATGAAACAACCGTTGAGGTATATATATCTTCTTTAATATTCAAAATACAAGATCAACCTGTATTTCCGAGTAGCCATCTAAGAATACTTTGGTGTTGTAGGCGGTGAACAATCATCTAGATATACTTAGACCTGCTATCAGAAACTACGGTGGAGAGGTAGAAGTTTTAGCCATCGAGGGTGCGGATTGCACGGTTAGATATGGAGGACCAGAGACCATTGGCTCAGGAATAAAAGCAGCTATCAAAGAGAAGTTTCCAGACATTTCAAATGTGATCTTTACTAGTTAG AGTAACAAATTGTCTACTCCCTTCAATTCAGTTGTGTTGCGACTTGCGAGGGATTTTAGAATTCGTTTAAGCCTTTAACTTTTATCAATGGCTTCTTCCCTACCCTCAGCTGGATTGATGAACAACCCATCAATATCTTTCCCAAAAATCCAAGCCAACTCCAATAAATCTCCATCATTTGCTAATTTTGCTCAGAAAAGCCCCAAATTTCTGAAGTTGGTCAATCTGAAAAGGGTGATTAGAGCATCAGCAGCTTCAAATGGGTCTCCAGGGCTTTACTCTTCCAAGCAATTGGAGTTAACAGTGAAGAACGTTGACCTGGTTTTGGAAGATGTACGACCTTATCTCATTTCTGATGGTGGAAATGTTGATGTTGTGTCCGTTCAAGATGGAGTCATAACCCTTGAACTTCTAGGAGCATGTGAGAGTTGTCCGAGCTCAACCACCACCATGAAAATGGGCATTGAAAAAGTTCTGAAAGAGAAGTTTGGAGATGCAGTCAAGGATATTCGTCAAGTCAATGAAGTACAAGTGAATGAAACAACCGTTGAGGCGGTGAACAATCATCTAGATATACTTAGACCTGCTATCAGAAACTACGGTGGAGAGGTAGAAGTTTTAGCCATCGAGGGTGCGGATTGCACGGTTAGATATGGAGGACCAGAGACCATTGGCTCAGGAATAAAAGCAGCTATCAAAGAGAAGTTTCCAGACATTTCAAATGTGATCTTTACTAGTTAG ATGGCTTCTTCCCTACCCTCAGCTGGATTGATGAACAACCCATCAATATCTTTCCCAAAAATCCAAGCCAACTCCAATAAATCTCCATCATTTGCTAATTTTGCTCAGAAAAGCCCCAAATTTCTGAAGTTGGTCAATCTGAAAAGGGTGATTAGAGCATCAGCAGCTTCAAATGGGTCTCCAGGGCTTTACTCTTCCAAGCAATTGGAGTTAACAGTGAAGAACGTTGACCTGGTTTTGGAAGATGTACGACCTTATCTCATTTCTGATGGTGGAAATGTTGATGTTGTGTCCGTTCAAGATGGAGTCATAACCCTTGAACTTCTAGGAGCATGTGAGAGTTGTCCGAGCTCAACCACCACCATGAAAATGGGCATTGAAAAAGTTCTGAAAGAGAAGTTTGGAGATGCAGTCAAGGATATTCGTCAAGTCAATGAAGTACAAGTGAATGAAACAACCGTTGAGGCGGTGAACAATCATCTAGATATACTTAGACCTGCTATCAGAAACTACGGTGGAGAGGTAGAAGTTTTAGCCATCGAGGGTGCGGATTGCACGGTTAGATATGGAGGACCAGAGACCATTGGCTCAGGAATAAAAGCAGCTATCAAAGAGAAGTTTCCAGACATTTCAAATGTGATCTTTACTAGTTAG MASSLPSAGLMNNPSISFPKIQANSNKSPSFANFAQKSPKFLKLVNLKRVIRASAASNGSPGLYSSKQLELTVKNVDLVLEDVRPYLISDGGNVDVVSVQDGVITLELLGACESCPSSTTTMKMGIEKVLKEKFGDAVKDIRQVNEVQVNETTVEAVNNHLDILRPAIRNYGGEVEVLAIEGADCTVRYGGPETIGSGIKAAIKEKFPDISNVIFTS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo17668.1 vs. NCBI nr
Match: gi|902223844|gb|KNA19617.1| (hypothetical protein SOVF_060140 [Spinacia oleracea]) HSP 1 Score: 418.7 bits (1075), Expect = 6.200e-114 Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1
BLAST of Spo17668.1 vs. NCBI nr
Match: gi|731336836|ref|XP_010679470.1| (PREDICTED: nifU-like protein 1, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 313.2 bits (801), Expect = 3.700e-82 Identity = 168/219 (76.71%), Postives = 184/219 (84.02%), Query Frame = 1
BLAST of Spo17668.1 vs. NCBI nr
Match: gi|870858536|gb|KMT10045.1| (hypothetical protein BVRB_5g122570 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 313.2 bits (801), Expect = 3.700e-82 Identity = 168/219 (76.71%), Postives = 184/219 (84.02%), Query Frame = 1
BLAST of Spo17668.1 vs. NCBI nr
Match: gi|658065532|ref|XP_008368728.1| (PREDICTED: nifU-like protein 1, chloroplastic [Malus domestica]) HSP 1 Score: 266.2 bits (679), Expect = 5.200e-68 Identity = 143/219 (65.30%), Postives = 171/219 (78.08%), Query Frame = 1
BLAST of Spo17668.1 vs. NCBI nr
Match: gi|658053583|ref|XP_008362545.1| (PREDICTED: nifU-like protein 1, chloroplastic [Malus domestica]) HSP 1 Score: 263.8 bits (673), Expect = 2.600e-67 Identity = 142/219 (64.84%), Postives = 170/219 (77.63%), Query Frame = 1
BLAST of Spo17668.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RLC8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_060140 PE=4 SV=1) HSP 1 Score: 418.7 bits (1075), Expect = 4.300e-114 Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1
BLAST of Spo17668.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C8N5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g122570 PE=4 SV=1) HSP 1 Score: 313.2 bits (801), Expect = 2.600e-82 Identity = 168/219 (76.71%), Postives = 184/219 (84.02%), Query Frame = 1
BLAST of Spo17668.1 vs. UniProtKB/TrEMBL
Match: D7U2L5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g01820 PE=4 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 3.000e-67 Identity = 141/216 (65.28%), Postives = 164/216 (75.93%), Query Frame = 1
BLAST of Spo17668.1 vs. UniProtKB/TrEMBL
Match: A0A0A0KB98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G412870 PE=4 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 3.000e-67 Identity = 138/220 (62.73%), Postives = 175/220 (79.55%), Query Frame = 1
BLAST of Spo17668.1 vs. UniProtKB/TrEMBL
Match: A0A140B480_PRUPE (NFU domain protein 1 OS=Prunus persica var. persica GN=NFU1 PE=2 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 6.800e-67 Identity = 141/218 (64.68%), Postives = 169/218 (77.52%), Query Frame = 1
BLAST of Spo17668.1 vs. ExPASy Swiss-Prot
Match: NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1) HSP 1 Score: 243.4 bits (620), Expect = 2.200e-63 Identity = 133/229 (58.08%), Postives = 164/229 (71.62%), Query Frame = 1
BLAST of Spo17668.1 vs. ExPASy Swiss-Prot
Match: NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 9.900e-19 Identity = 58/154 (37.66%), Postives = 91/154 (59.09%), Query Frame = 1
BLAST of Spo17668.1 vs. ExPASy Swiss-Prot
Match: NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 4.900e-18 Identity = 60/155 (38.71%), Postives = 84/155 (54.19%), Query Frame = 1
BLAST of Spo17668.1 vs. ExPASy Swiss-Prot
Match: NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 2.700e-16 Identity = 57/155 (36.77%), Postives = 89/155 (57.42%), Query Frame = 1
BLAST of Spo17668.1 vs. ExPASy Swiss-Prot
Match: YUTI_BACSU (Putative nitrogen fixation protein YutI OS=Bacillus subtilis (strain 168) GN=yutI PE=3 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 4.400e-11 Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 1
BLAST of Spo17668.1 vs. TAIR (Arabidopsis)
Match: AT4G01940.1 (NFU domain protein 1) HSP 1 Score: 243.4 bits (620), Expect = 1.300e-64 Identity = 133/229 (58.08%), Postives = 164/229 (71.62%), Query Frame = 1
BLAST of Spo17668.1 vs. TAIR (Arabidopsis)
Match: AT5G49940.1 (NIFU-like protein 2) HSP 1 Score: 95.1 bits (235), Expect = 5.600e-20 Identity = 58/154 (37.66%), Postives = 91/154 (59.09%), Query Frame = 1
BLAST of Spo17668.1 vs. TAIR (Arabidopsis)
Match: AT4G25910.1 (NFU domain protein 3) HSP 1 Score: 87.0 bits (214), Expect = 1.500e-17 Identity = 57/155 (36.77%), Postives = 89/155 (57.42%), Query Frame = 1
BLAST of Spo17668.1 vs. TAIR (Arabidopsis)
Match: AT3G20970.1 (NFU domain protein 4) HSP 1 Score: 48.1 bits (113), Expect = 7.800e-6 Identity = 29/86 (33.72%), Postives = 48/86 (55.81%), Query Frame = 1
BLAST of Spo17668.1 vs. TAIR (Arabidopsis)
Match: AT1G51390.1 (NFU domain protein 5) HSP 1 Score: 48.1 bits (113), Expect = 7.800e-6 Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17668.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo17668.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo17668.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo17668.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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