Spo17687 (gene) | SpinachBase

Overview


Name	Spo17687
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr5 : 630848 .. 631151 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTTGGGGGTGTCCATCTTGTGTCTAATGTGGGTGTTCTTTTCGGGAGTGATGCGGTGGTCGAGCATGTCAGAAAAGGGCTGATGGAAAGCAGCATATGCGCACACACATGTTCTCGGCTAATGTCTTCTTCTGTCTTTTAAGTGTTCCATAACTGCAGTTTGATCATATTGATTTTCTCTGCAATTGTGCACTTTAGTATTTCATATCGTCGATATCGAGTCTTACAAGACAGCATTTTGGGGGTTTTGGGAAGTGTTCCATTACTGCAGTTTGATTGTTGACCTGTTCTGCAATTAA

mRNA sequence

ATGCATTTTGGGGGTGTCCATCTTGTGTCTAATGTGGGTGTTCTTTTCGGGAGTGATGCGGTGGTCGAGCATGTCAGAAAAGGGCTGATGGAAAGCAGCATATGCGCACACACATTATTTCATATCGTCGATATCGAGTCTTACAAGACAGCATTTTGGGGGTTTTGGGAAGTGTTCCATTACTGCAGTTTGATTGTTGACCTGTTCTGCAATTAA

Coding sequence (CDS)

ATGCATTTTGGGGGTGTCCATCTTGTGTCTAATGTGGGTGTTCTTTTCGGGAGTGATGCGGTGGTCGAGCATGTCAGAAAAGGGCTGATGGAAAGCAGCATATGCGCACACACATTATTTCATATCGTCGATATCGAGTCTTACAAGACAGCATTTTGGGGGTTTTGGGAAGTGTTCCATTACTGCAGTTTGATTGTTGACCTGTTCTGCAATTAA

Protein sequence

MHFGGVHLVSNVGVLFGSDAVVEHVRKGLMESSICAHTLFHIVDIESYKTAFWGFWEVFHYCSLIVDLFCN

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo17687.1	Spo17687.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo17687.1 vs. NCBI nr
BLAST of Spo17687.1 vs. UniProtKB/TrEMBL
BLAST of Spo17687.1 vs. ExPASy Swiss-Prot
BLAST of Spo17687.1 vs. TAIR (Arabidopsis)

BLAST of Spo17687.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo17687.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo17687.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo17687.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0006090	pyruvate metabolic process
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009165	nucleotide biosynthetic process
biological_process	GO:0006457	protein folding
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0006108	malate metabolic process
biological_process	GO:0019643	reductive tricarboxylic acid cycle
biological_process	GO:0006568	tryptophan metabolic process
biological_process	GO:0046486	glycerolipid metabolic process
biological_process	GO:0006071	glycerol metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0033356	UDP-L-arabinose metabolic process
biological_process	GO:0044070	regulation of anion transport
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006396	RNA processing
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006950	response to stress
biological_process	GO:0006099	tricarboxylic acid cycle
biological_process	GO:0006508	proteolysis
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006554	lysine catabolic process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0044260	cellular macromolecule metabolic process
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005741	mitochondrial outer membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0016020	membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0045252	oxoglutarate dehydrogenase complex
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008308	voltage-gated anion channel activity
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0052691	UDP-arabinopyranose mutase activity
molecular_function	GO:0008466	glycogenin glucosyltransferase activity
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0050897	cobalt ion binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004371	glycerone kinase activity
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0030060	L-malate dehydrogenase activity
molecular_function	GO:0004591	oxoglutarate dehydrogenase (succinyl-transferring) activity
molecular_function	GO:0030976	thiamine pyrophosphate binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo06317	0.74	Barchart \| Table
Spo01478	0.73	Barchart \| Table
Spo24916	0.72	Barchart \| Table
Spo02993	0.72	Barchart \| Table
Spo24839	0.72	Barchart \| Table
Spo03008	0.71	Barchart \| Table
Spo17688	0.71	Barchart \| Table
Spo03007	0.71	Barchart \| Table
Spo13818	0.70	Barchart \| Table
Spo01134	0.70	Barchart \| Table
Spo06097	0.70	Barchart \| Table
Spo06101	0.70	Barchart \| Table
Spo14043	0.70	Barchart \| Table
Spo09854	0.69	Barchart \| Table
Spo13328	0.68	Barchart \| Table
Spo07017	0.68	Barchart \| Table
Spo19231	0.68	Barchart \| Table
Spo24936	0.68	Barchart \| Table
Spo24937	0.68	Barchart \| Table
Spo14513	0.67	Barchart \| Table
Spo25100	0.67	Barchart \| Table
Spo01183	0.67	Barchart \| Table
Spo04759	0.66	Barchart \| Table
Spo20235	0.66	Barchart \| Table
Spo20519	0.66	Barchart \| Table
Spo07016	0.66	Barchart \| Table
Spo22535	0.65	Barchart \| Table
Spo12735	0.65	Barchart \| Table
Spo30005	0.65	Barchart \| Table
Spo03714	0.65	Barchart \| Table