Spo17731 (gene)

Overview
NameSpo17731
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRNA-binding family protein
LocationSpoScf_02688 : 29144 .. 33348 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAAGAAAGAAGGAGGGAGAGGAGAGGAGAGAGAAAATGGGGGCGTAGGAGATTGAGTGAGATCTAGGGTTTGCTGAAAAACCATCAATGGAAGAACCACGGGTGAAAGGAAAAGAAGAAGGCAAGTAGGAAGTAGGGAGGAGGGAGAAGGGAGGCACCGAGGCAAGGAGGAGTGAACACGAGAGTTAGAGGAGGGCACAAATGATAAATGATAAAAATCTTAAGGGTTTTTTAGGCAATACACTATTGGATGAATAGTGAAATCATATTCCTTGCTTTTAGGTTGTAAGATATGTGACCACATATATCCGGATGTTCTCATGTTCTCCCTTACACACGTCCAAATTATCTTTGTTGGATTTGGTGTATATATTTGCAAATATATCTTCTGTTCTAAACCCAAAATATTAATGTTCTTATTGGTGATTACTGGTAAACTCAAACCTTCATCTTTTTGGAAAACTAAATAGGTGGTTGCTACTGGAGTTGGAACTTGGGTGATGGACATGGATGGCTGAAGGGTTCTACTTATAATACGTTCTAGATATTATTGAATCTGGTTGATGATATTCATTACTGTAAGTAGGATTAACCACTTTGAATCATAACATGTATCCTCAATAGGAATGACTGCTAACCTTCTCCTTGTCTCAGTTGCATTTTTTTTCGAGGTCAGTATGATTTACTTCATTTTGTCGTATGCGTAATATTCATCAGATCATGGGGCTGGCCACGGCCAAAGCCCCAAGTGAGGAGAAAATCATTATTTTTCCAAGAAAACATTTTATAGCCTTTATCTTATTGTTTGACCTATGGTTGTGCATGATTTCCTTTTCTTTCTAAGGCAGACAAAAACCTGATATGTTGATTCTATTGTCTGGCAACACATAAATTCTTTAAAATTTGACTGTTGAATGCCTATTGTTGTTACATTTTTTCACAAGATGCCATACCCAGTGACTCTGTTTTGTACAACATGTTCGATATACTCTCTGCAGTAGGGCTCGTGGTATGCTTCAGGATGTAAATTCTTCCCGACCCCCAAATTAAGTACATGGAAAAATAGATTTGATGAATAATTAAGGCCTCTTCAATTTGTGGTGGTTTTCATTTTATTTGGGAATGGGAACCATTCCCTAGATTATTATGTCTGAGTTATGCCAATGAATTATTGTTTAAACCATTTTATACAAGTAGTAAAAATTTCGAGAAAGAAAGTATAATAAAAGTCTCCTCGAGGCAACATGGGTATTAAGGTAGATCTTTAAGGTTCTTTAAGAGTAGCTGCCATATTGTGAATTCTAGACCCATAATATGGACTATTCCTTTCAAGAAAGAAAATTTGATGGGAGTCTAATTGAGGCAGTATTGGTTTCAATTTAATCGAATCCTAAATTCCTAAGACAAGACGATAACGGGATATTGCTTAATTTCTACTTTCTTTTTTGTATTTGATTGCGGGGTAAGGGCTATCAAATCATCATTTTATTTGGGTTCTGCTATATTGGATTGTGGGTAGTGATTTTCAGTCGTTATTTTATATGCGTCTCTAATTATGGTTATTTTCCAATGTCGATGGTTAAATTATGGTTTTGGTATCCTTTGAATGTCGAAACAAAACAATATTAGCCACCAAACGGAAAATTTAATTCCACTTTTCTGGAGTGACAAAGTATGTTGGTTGTAAAGCTAGCATTAACGCATGGTGTTTTTTGCCTCAGGCAGTTCGTACGCTTTGGATTGGAGATCTGCAGTATTCGATGGACGAGATTATATTTGCAATTGTTTTGCCCATACCGGCGAGGTATATCAAATCTAATGTTTATAATTGTTTATTTTCATCGATTAAGTTCTTTGATTTGGCGATTTCCTTCTAAGTTTGTAACTTTTTTGATTTTTTATTGATGCCATGAAAAGATCTGATATGTCTATATTGTGGATATGTGTTTAATTTTTAGAAGTCATGTGATGATTCCAGTGTAATATCATCATTGAATATTTTAGGATTATGTCTCGTACTTATTAATTGTTTTATGTGAGGTAACAAAGATTGTTTAGAATAAAGATAATGAGGATAAGTGTAGGGGGTGTAGTTTTTTGTGTTGAAGTTTCTGGAAATTTTAGGATTTAAGCATTTACTTTTCTTGCCTGCACTGTGGCCGGAAGGTGCTTCCTTTGGTGTTTATGAAGTGTAGTAATTGAAATGGTTTTTCCCTGTAAATCTAGTCAAGACGGAGGTCTTGAAAGTTTTGGATGTAATTTGTTTCTCATGTTAAGAAAAAAAAAGTGGAAAGATGGATATTGTCGGGCAAAACGACTCTTGAGAGGTCTAGATGTACTCGGTTTTCCCTGAAAATAACTTTGAAGTCATTAAGTTTTGTAGAAGACTTTTATTCAAAGTTGCAACTAGCTTACAACATTGTTTAGGTTTTTTTTGTAAGTCATGATCTTCAAAATTAGGAAATGTTTGAGGTTTTTGGAGTTGATTGAGCCTGTAAGTGATGTTAAGGGTCAAGGACCTGTTTTTGGTGGAAAATTAAACTCATTTTTTCTTTGATTGGATTAGTTGGTGAATGTATTTCTACTCTATAAGTGAGATATGTTAAATCCTTGTGTTCGCTTCCATGTTGCAGCTTAACTTTTAACAAGCTTAGGCTCTTAAGCGTATTCACTCTCTTAACTACTAATGCTCCTAAATCTTGCAGCTTTCCATGTCAATATCGTTCGTAATATACAAACCATGCAGTTAGAGTGTTACGGATTTCTTGAGTTTACCACTCATGTTACTGCTGGGAGGATTCTGCAGACTCTGAATAATACTTTGATGCCAAATGTTGAGCAAAACTACAGACCGGATTGGGTTTTCTTTGGAACTGGTGAGAAATGGGGAGAGGATGCTTTTGATTATACAATTTTGGTCAGAGATTTAGCAGCAGATGTTACTGATTACACATTGCAAGAAACTTTTAGAGCTCGTTATCTGTCAATTAAAGGTGCTAAGGTTGTCAATTTGTCATAGATAGACAAACTGGTAGAGCTAAGGGTTATGGATTTGTTTGTTTCACCGATGAAAATGAACAAGTACGTGTCATGTCAGAGATGAATGGAATGGTGTGTCCAGGGCGTGCAATGCGTATCGGAGCTGATGCAACAAGAAAAGTGTTGGTGGAACATGTATGTGTTAGTTAGATTGTTTAACATGACTTCAAATGGCAGTATTTTATTTTATCCATGTGCATGAACTTCTCTGATTTTATGAATTTGTATAGTATCTTCATTTTTCTGGTGTATGTTATTCATAACCTAGAGTTGGTTAGTTGGGAAGCATGGTGATTGGTTTCTCTTTATATTGGTTATTGTTATTTGGGTCTCCTACATTCACTTGAAGATGCGCATAAATTTAGTTCCATTGCTTTCCTTTCAGAATTTGGGAACAATTAATTGCCAACTGAAAATCTTATACAACTCCCATTGTCTCAAAGCAGGGCGTCAAGAGGCTCTGCCATTTAGGGGCCTGGGGCTGAATTCAGACGAAATGGTTACCCCCTTAGTATGTTGCCTTGTGCAGGTCAGTAATGTCAAAAAATTTCCATTTCACGCAGCTTCCAGTGCTAAAAGTTACTCTTCCATTCAGTTTAGTATATTATTAAAAAAATACAGTTGTTAGTTTCGTTCAATTTCATTACAATTCAAGATGTCATTAATTTAATCGTATTTTTTTCGCTTAATTAATAATTTTCTTAATGATCCTTTGCCCACTTTTAGTACTTTGATATTATTATTTATCAAGTCCTAGCTTGTATTCTTTTTCTTCTTTTATAGTCAGATTTATCTTGCCTGCATTTGCTTCCTTTTAAAAAAACATCTACATGAGAGTGTGTTCTAATTGAGTTATGAACCTCTTTAAACACTCATTAGTTTAGTTGTTGAGTTTTATTGGTTCGTACATTATTATCATCCTCTTGGGGTGCTTAACTAGGTATTTAGTTCCAATCATACTTGATACAACTGAACTAATTTTGCATCGGGCGCAAAGAACAAGCACATGCCGTCATCAAGGCTTCAATGGTCCAACAATCGCAATTCTCTTCTAGGTATATGGATAGATATATTGTAAGTTGTTTACATGACTTTTTACATTTTTCTAACTGAAAGGGGATTGATTTACTACAATGGTCTAGGCTATCTCCTATGTATTAA

mRNA sequence

ATGGATAAAGAAAGAAGGAGGGAGAGGAGAGGAGAGAGAAAATGGGGGCGCAGTTCGTACGCTTTGGATTGGAGATCTGCAGTATTCGATGGACGAGATTATATTTGCAATTGTTTTGCCCATACCGGCGAGTTAGAGTGTTACGGATTTCTTGAGTTTACCACTCATGTTACTGCTGGGAGGATTCTGCAGACTCTGAATAATACTTTGATGCCAAATGTTGAGCAAAACTACAGACCGGATTGGGTTTTCTTTGGAACTGGTGAGAAATGGGGAGAGGATGCTTTTGATTATACAATTTTGGTCAGAGATTTAGCAGCAGATGTTACTGATTACACATTGCAAGAAACTTTTAGAGCTCGTTATCTGTCAATTAAAGATAGACAAACTGGTAGAGCTAAGGGTTATGGATTTGTTTGTTTCACCGATGAAAATGAACAAGTACGTGTCATGTCAGAGATGAATGGAATGGTGTGTCCAGGGCGTGCAATGCGTATCGGAGCTGATGCAACAAGAAAAGTGTTGGTGGAACATAATTTGGGAACAATTAATTGCCAACTGAAAATCTTATACAACTCCCATTGTCTCAAAGCAGGGCGTCAAGAGGCTCTGCCATTTAGGGGCCTGGGGCTGAATTCAGACGAAATGGTTACCCCCTTAGTATGTTGCCTTGTGCAGGGGATTGATTTACTACAATGGTCTAGGCTATCTCCTATGTATTAA

Coding sequence (CDS)

ATGGATAAAGAAAGAAGGAGGGAGAGGAGAGGAGAGAGAAAATGGGGGCGCAGTTCGTACGCTTTGGATTGGAGATCTGCAGTATTCGATGGACGAGATTATATTTGCAATTGTTTTGCCCATACCGGCGAGTTAGAGTGTTACGGATTTCTTGAGTTTACCACTCATGTTACTGCTGGGAGGATTCTGCAGACTCTGAATAATACTTTGATGCCAAATGTTGAGCAAAACTACAGACCGGATTGGGTTTTCTTTGGAACTGGTGAGAAATGGGGAGAGGATGCTTTTGATTATACAATTTTGGTCAGAGATTTAGCAGCAGATGTTACTGATTACACATTGCAAGAAACTTTTAGAGCTCGTTATCTGTCAATTAAAGATAGACAAACTGGTAGAGCTAAGGGTTATGGATTTGTTTGTTTCACCGATGAAAATGAACAAGTACGTGTCATGTCAGAGATGAATGGAATGGTGTGTCCAGGGCGTGCAATGCGTATCGGAGCTGATGCAACAAGAAAAGTGTTGGTGGAACATAATTTGGGAACAATTAATTGCCAACTGAAAATCTTATACAACTCCCATTGTCTCAAAGCAGGGCGTCAAGAGGCTCTGCCATTTAGGGGCCTGGGGCTGAATTCAGACGAAATGGTTACCCCCTTAGTATGTTGCCTTGTGCAGGGGATTGATTTACTACAATGGTCTAGGCTATCTCCTATGTATTAA

Protein sequence

MDKERRRERRGERKWGRSSYALDWRSAVFDGRDYICNCFAHTGELECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYRPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIKDRQTGRAKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVLVEHNLGTINCQLKILYNSHCLKAGRQEALPFRGLGLNSDEMVTPLVCCLVQGIDLLQWSRLSPMY
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo17731.1Spo17731.1mRNA


Homology
[Close]
BLAST of Spo17731.1 vs. NCBI nr
Match: gi|902184772|gb|KNA10364.1| (hypothetical protein SOVF_145010 isoform A [Spinacia oleracea])

HSP 1 Score: 223.4 bits (568), Expect = 4.200e-55
Identity = 115/161 (71.43%), Postives = 123/161 (76.40%), Query Frame = 1 

		  

Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +YI NCFA TGEL              ECYGFLEFTTH  A RILQTLNNTLMPNVEQNY
Sbjct: 98  NYIRNCFAPTGELSNVKIIRNKQTMQSECYGFLEFTTHAAAERILQTLNNTLMPNVEQNY 157

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W F+GTGEK GEDA DYTI V DLAADVTDYTLQETFR RY S+K      DRQTGR
Sbjct: 158 RLNWAFYGTGEKRGEDASDYTIFVGDLAADVTDYTLQETFRVRYPSVKGAKVVIDRQTGR 217

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRK 174
           AKGYGFV F+DE+EQVR MSEMNGM+C GRAMRIGA A +K
Sbjct: 218 AKGYGFVRFSDESEQVRAMSEMNGMMCSGRAMRIGAAANKK 258
[Close]
BLAST of Spo17731.1 vs. NCBI nr
Match: gi|30524689|emb|CAC85246.1| (salt tolerance protein 6 [Beta vulgaris])

HSP 1 Score: 204.5 bits (519), Expect = 2.000e-49
Identity = 108/177 (61.02%), Postives = 123/177 (69.49%), Query Frame = 1 

		  

Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +YI  CFA +GEL              ECYGF+EF+TH  A RILQT NNTLMPNVEQNY
Sbjct: 4   NYIRTCFAQSGELVNVKIIRNKQTMQSECYGFIEFSTHAAAERILQTYNNTLMPNVEQNY 63

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W F+G+GEK GEDA DYTI V DLA DVTDYTLQETFR RY S+K      DR T R
Sbjct: 64  RLNWAFYGSGEKRGEDASDYTIFVGDLAPDVTDYTLQETFRVRYPSVKGAKVVIDRLTSR 123

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVL-----VEHNLGTIN 185
           +KGYGFV F DE+EQ R MSEMNGM+C GRAMRIGA A +K +      ++N GT N
Sbjct: 124 SKGYGFVRFGDESEQARAMSEMNGMMCLGRAMRIGAAANKKSVGGTASYQNNQGTPN 180
[Close]
BLAST of Spo17731.1 vs. NCBI nr
Match: gi|731369905|ref|XP_010665562.1| (PREDICTED: polyadenylate-binding protein RBP45-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 204.5 bits (519), Expect = 2.000e-49
Identity = 108/177 (61.02%), Postives = 123/177 (69.49%), Query Frame = 1 

		  

Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +YI  CFA +GEL              ECYGF+EF+TH  A RILQT NNTLMPNVEQNY
Sbjct: 96  NYIRTCFAQSGELVNVKIIRNKQTMQSECYGFIEFSTHAAAERILQTYNNTLMPNVEQNY 155

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W F+G+GEK GEDA DYTI V DLA DVTDYTLQETFR RY S+K      DR T R
Sbjct: 156 RLNWAFYGSGEKRGEDASDYTIFVGDLAPDVTDYTLQETFRVRYPSVKGAKVVIDRLTSR 215

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVL-----VEHNLGTIN 185
           +KGYGFV F DE+EQ R MSEMNGM+C GRAMRIGA A +K +      ++N GT N
Sbjct: 216 SKGYGFVRFGDESEQARAMSEMNGMMCLGRAMRIGAAANKKSVGGTASYQNNQGTPN 272
[Close]
BLAST of Spo17731.1 vs. NCBI nr
Match: gi|629104705|gb|KCW70174.1| (hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis])

HSP 1 Score: 180.3 bits (456), Expect = 4.100e-42
Identity = 100/204 (49.02%), Postives = 120/204 (58.82%), Query Frame = 1 

		  

Query: 34  YICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYR 93
           Y+ NCFAH+GE+              E YGF+EF T   A RILQT N TLMPN +QN+R
Sbjct: 79  YLLNCFAHSGEVLSAKVIRNKQTALPEGYGFIEFMTRAAAERILQTYNGTLMPNSDQNFR 138

Query: 94  PDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGRA 153
            +W   G GE+  ++  DYTI V DLAADVTD+ LQETFRA Y S+K      DR TGR+
Sbjct: 139 LNWATLGPGERRQDEGPDYTIFVGDLAADVTDHMLQETFRAHYPSVKGAKIVIDRTTGRS 198

Query: 154 KGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVLVEHNLGTINCQLKILYNS 213
           KGYGFV F DE EQ+R M+EMNGM C  R MRIG  A +K +                  
Sbjct: 199 KGYGFVRFGDETEQLRAMTEMNGMYCSSRPMRIGPAANKKPIATQQ-------------- 258

Query: 214 HCLKAGRQEALPFRGLGLNSDEMV 218
              ++GRQEAL   GL L S EM+
Sbjct: 259 --YQSGRQEALILEGLELISAEMI 266
[Close]
BLAST of Spo17731.1 vs. NCBI nr
Match: gi|976901589|gb|KVH89625.1| (Nucleotide-binding, alpha-beta plait [Cynara cardunculus var. scolymus])

HSP 1 Score: 175.3 bits (443), Expect = 1.300e-40
Identity = 100/204 (49.02%), Postives = 119/204 (58.33%), Query Frame = 1 

		  

Query: 34  YICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYR 93
           Y+ +CFA TGE+              E YGF+EF     A R LQ  N TLMPNVEQ +R
Sbjct: 89  YLLSCFAQTGEVVSAKVIRNKQSGQSEGYGFIEFANRAAAERHLQAYNGTLMPNVEQLFR 148

Query: 94  PDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGRA 153
            +W  FG GEK  +D  DYT+ V DLAADVTDYTLQETFRA Y S+K      DR TGR 
Sbjct: 149 LNWATFGAGEKRQDDTPDYTVFVGDLAADVTDYTLQETFRAHYPSVKGAKVVTDRLTGRT 208

Query: 154 KGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVLVEHNLGTINCQLKILYNS 213
           KGYGFV F DE+EQVR M+EMNG +C  R MRIG  A +K     N+G            
Sbjct: 209 KGYGFVKFGDESEQVRAMTEMNGRLCSTRPMRIGPAANKK-----NVG-----------G 268

Query: 214 HCLKAGRQEALPFRGLGLNSDEMV 218
                G QEAL ++GL + S E++
Sbjct: 269 QQYPKGHQEALSYKGLAMISAEIL 276
[Close]
BLAST of Spo17731.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QSW8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_145010 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 3.000e-55
Identity = 115/161 (71.43%), Postives = 123/161 (76.40%), Query Frame = 1 

		  

Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +YI NCFA TGEL              ECYGFLEFTTH  A RILQTLNNTLMPNVEQNY
Sbjct: 98  NYIRNCFAPTGELSNVKIIRNKQTMQSECYGFLEFTTHAAAERILQTLNNTLMPNVEQNY 157

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W F+GTGEK GEDA DYTI V DLAADVTDYTLQETFR RY S+K      DRQTGR
Sbjct: 158 RLNWAFYGTGEKRGEDASDYTIFVGDLAADVTDYTLQETFRVRYPSVKGAKVVIDRQTGR 217

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRK 174
           AKGYGFV F+DE+EQVR MSEMNGM+C GRAMRIGA A +K
Sbjct: 218 AKGYGFVRFSDESEQVRAMSEMNGMMCSGRAMRIGAAANKK 258
[Close]
BLAST of Spo17731.1 vs. UniProtKB/TrEMBL
Match: Q84LL7_BETVU (Salt tolerance protein 6 OS=Beta vulgaris GN=sato6 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.400e-49
Identity = 108/177 (61.02%), Postives = 123/177 (69.49%), Query Frame = 1 

		  

Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +YI  CFA +GEL              ECYGF+EF+TH  A RILQT NNTLMPNVEQNY
Sbjct: 4   NYIRTCFAQSGELVNVKIIRNKQTMQSECYGFIEFSTHAAAERILQTYNNTLMPNVEQNY 63

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W F+G+GEK GEDA DYTI V DLA DVTDYTLQETFR RY S+K      DR T R
Sbjct: 64  RLNWAFYGSGEKRGEDASDYTIFVGDLAPDVTDYTLQETFRVRYPSVKGAKVVIDRLTSR 123

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVL-----VEHNLGTIN 185
           +KGYGFV F DE+EQ R MSEMNGM+C GRAMRIGA A +K +      ++N GT N
Sbjct: 124 SKGYGFVRFGDESEQARAMSEMNGMMCLGRAMRIGAAANKKSVGGTASYQNNQGTPN 180
[Close]
BLAST of Spo17731.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E0W4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g200490 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.400e-49
Identity = 108/177 (61.02%), Postives = 123/177 (69.49%), Query Frame = 1 

		  

Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +YI  CFA +GEL              ECYGF+EF+TH  A RILQT NNTLMPNVEQNY
Sbjct: 96  NYIRTCFAQSGELVNVKIIRNKQTMQSECYGFIEFSTHAAAERILQTYNNTLMPNVEQNY 155

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W F+G+GEK GEDA DYTI V DLA DVTDYTLQETFR RY S+K      DR T R
Sbjct: 156 RLNWAFYGSGEKRGEDASDYTIFVGDLAPDVTDYTLQETFRVRYPSVKGAKVVIDRLTSR 215

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVL-----VEHNLGTIN 185
           +KGYGFV F DE+EQ R MSEMNGM+C GRAMRIGA A +K +      ++N GT N
Sbjct: 216 SKGYGFVRFGDESEQARAMSEMNGMMCLGRAMRIGAAANKKSVGGTASYQNNQGTPN 272
[Close]
BLAST of Spo17731.1 vs. UniProtKB/TrEMBL
Match: A0A059BW09_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03462 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.900e-42
Identity = 100/204 (49.02%), Postives = 120/204 (58.82%), Query Frame = 1 

		  

Query: 34  YICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYR 93
           Y+ NCFAH+GE+              E YGF+EF T   A RILQT N TLMPN +QN+R
Sbjct: 79  YLLNCFAHSGEVLSAKVIRNKQTALPEGYGFIEFMTRAAAERILQTYNGTLMPNSDQNFR 138

Query: 94  PDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGRA 153
            +W   G GE+  ++  DYTI V DLAADVTD+ LQETFRA Y S+K      DR TGR+
Sbjct: 139 LNWATLGPGERRQDEGPDYTIFVGDLAADVTDHMLQETFRAHYPSVKGAKIVIDRTTGRS 198

Query: 154 KGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVLVEHNLGTINCQLKILYNS 213
           KGYGFV F DE EQ+R M+EMNGM C  R MRIG  A +K +                  
Sbjct: 199 KGYGFVRFGDETEQLRAMTEMNGMYCSSRPMRIGPAANKKPIATQQ-------------- 258

Query: 214 HCLKAGRQEALPFRGLGLNSDEMV 218
              ++GRQEAL   GL L S EM+
Sbjct: 259 --YQSGRQEALILEGLELISAEMI 266
[Close]
BLAST of Spo17731.1 vs. UniProtKB/TrEMBL
Match: A0A103XF54_CYNCS (Nucleotide-binding, alpha-beta plait OS=Cynara cardunculus var. scolymus GN=Ccrd_008393 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 9.200e-41
Identity = 100/204 (49.02%), Postives = 119/204 (58.33%), Query Frame = 1 

		  

Query: 34  YICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYR 93
           Y+ +CFA TGE+              E YGF+EF     A R LQ  N TLMPNVEQ +R
Sbjct: 89  YLLSCFAQTGEVVSAKVIRNKQSGQSEGYGFIEFANRAAAERHLQAYNGTLMPNVEQLFR 148

Query: 94  PDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGRA 153
            +W  FG GEK  +D  DYT+ V DLAADVTDYTLQETFRA Y S+K      DR TGR 
Sbjct: 149 LNWATFGAGEKRQDDTPDYTVFVGDLAADVTDYTLQETFRAHYPSVKGAKVVTDRLTGRT 208

Query: 154 KGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVLVEHNLGTINCQLKILYNS 213
           KGYGFV F DE+EQVR M+EMNG +C  R MRIG  A +K     N+G            
Sbjct: 209 KGYGFVKFGDESEQVRAMTEMNGRLCSTRPMRIGPAANKK-----NVG-----------G 268

Query: 214 HCLKAGRQEALPFRGLGLNSDEMV 218
                G QEAL ++GL + S E++
Sbjct: 269 QQYPKGHQEALSYKGLAMISAEIL 276
[Close]
BLAST of Spo17731.1 vs. ExPASy Swiss-Prot
Match: RBP45_NICPL (Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.100e-39
Identity = 86/161 (53.42%), Postives = 107/161 (66.46%), Query Frame = 1 

		  

Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +Y+  CF HTGEL              E YGFLEF +H  A  ILQT N TLMPNVEQN+
Sbjct: 98  NYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNF 157

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W   G GE+  +D+ ++TI V DLAADVTDY LQETF++ Y S++      DR TGR
Sbjct: 158 RMNWASLGAGER-RDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGR 217

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRK 174
           +KGYGFV F DE+EQ+R M+EMNG++C  R MRIG  A +K
Sbjct: 218 SKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKK 257
[Close]
BLAST of Spo17731.1 vs. ExPASy Swiss-Prot
Match: RB45B_ARATH (Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.300e-35
Identity = 81/162 (50.00%), Postives = 105/162 (64.81%), Query Frame = 1 

		  

Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNV-EQN 92
           +++  CFAHTGE+              E YGF+EF +H  A R+LQT NN  +P+  +Q 
Sbjct: 76  NFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQL 135

Query: 93  YRPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTG 152
           +R +W    +G+K  +D+ DYTI V DLAADVTDY L ETFRA Y S+K      DR TG
Sbjct: 136 FRLNWASLSSGDK-RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTG 195

Query: 153 RAKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRK 174
           R KGYGFV F+DE+EQ+R M+EMNG+ C  R MRIG  A++K
Sbjct: 196 RTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
[Close]
BLAST of Spo17731.1 vs. ExPASy Swiss-Prot
Match: RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.400e-34
Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = 1 

		  

Query: 42  TGELECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYRPDWVFFGTGEKWGEDAFDYTIL 101
           TG+ E YGF+EF TH  A ++LQ+ N T+MPN EQ +R +W  F TGEK  E   D++I 
Sbjct: 121 TGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIF 180

Query: 102 VRDLAADVTDYTLQETFRARYLSIK------DRQTGRAKGYGFVCFTDENEQVRVMSEMN 161
           V DLA+DVTD  L++TF +RY S+K      D  TG +KGYGFV F DE+E+ R M+EMN
Sbjct: 181 VGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMN 240

Query: 162 GMVCPGRAMRIGADATRK 174
           G+ C  RAMRIG    +K
Sbjct: 241 GVYCSSRAMRIGVATPKK 258
[Close]
BLAST of Spo17731.1 vs. ExPASy Swiss-Prot
Match: RB45A_ARATH (Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana GN=RBP45A PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.300e-32
Identity = 73/141 (51.77%), Postives = 91/141 (64.54%), Query Frame = 1 

		  

Query: 42  TGELECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYRPDWVFFGTGEK-WGEDAFDYTI 101
           TG+ E YGF+EF +H  A R+LQT N   MP+ EQ +R +W   G GEK +  +  D+TI
Sbjct: 97  TGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTI 156

Query: 102 LVRDLAADVTDYTLQETFRARYLSIK------DRQTGRAKGYGFVCFTDENEQVRVMSEM 161
            V DLA +VTDY L +TF+  Y S+K      DR TGR+KGYGFV F DENEQ+R M+EM
Sbjct: 157 FVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEM 216

Query: 162 NGMVCPGRAMRIGADATRKVL 176
           NG  C  R MRIG  A +  L
Sbjct: 217 NGQYCSTRPMRIGPAANKNAL 237
[Close]
BLAST of Spo17731.1 vs. ExPASy Swiss-Prot
Match: RP45C_ARATH (Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana GN=RBP45C PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.700e-32
Identity = 76/163 (46.63%), Postives = 95/163 (58.28%), Query Frame = 1 

		  

Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +Y+ N F  TGE               E YGF+EF  H TA R LQT N   MP+ EQ +
Sbjct: 94  NYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAF 153

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W   G GE+   +  ++T+ V DLA DVTD+ L ETF+A Y S+K      DR TGR
Sbjct: 154 RLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGR 213

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVL 176
           +KGYGFV F DE+EQ+R M+EMNG  C  R MR G  A +K L
Sbjct: 214 SKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL 256
[Close]
BLAST of Spo17731.1 vs. TAIR (Arabidopsis)
Match: AT1G11650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 151.4 bits (381), Expect = 7.200e-37
Identity = 81/162 (50.00%), Postives = 105/162 (64.81%), Query Frame = 1 

		  

Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNV-EQN 92
           +++  CFAHTGE+              E YGF+EF +H  A R+LQT NN  +P+  +Q 
Sbjct: 76  NFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQL 135

Query: 93  YRPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTG 152
           +R +W    +G+K  +D+ DYTI V DLAADVTDY L ETFRA Y S+K      DR TG
Sbjct: 136 FRLNWASLSSGDK-RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTG 195

Query: 153 RAKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRK 174
           R KGYGFV F+DE+EQ+R M+EMNG+ C  R MRIG  A++K
Sbjct: 196 RTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
[Close]
BLAST of Spo17731.1 vs. TAIR (Arabidopsis)
Match: AT5G54900.1 (RNA-binding protein 45A)

HSP 1 Score: 141.4 bits (355), Expect = 7.500e-34
Identity = 73/141 (51.77%), Postives = 91/141 (64.54%), Query Frame = 1 

		  

Query: 42  TGELECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYRPDWVFFGTGEK-WGEDAFDYTI 101
           TG+ E YGF+EF +H  A R+LQT N   MP+ EQ +R +W   G GEK +  +  D+TI
Sbjct: 97  TGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTI 156

Query: 102 LVRDLAADVTDYTLQETFRARYLSIK------DRQTGRAKGYGFVCFTDENEQVRVMSEM 161
            V DLA +VTDY L +TF+  Y S+K      DR TGR+KGYGFV F DENEQ+R M+EM
Sbjct: 157 FVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEM 216

Query: 162 NGMVCPGRAMRIGADATRKVL 176
           NG  C  R MRIG  A +  L
Sbjct: 217 NGQYCSTRPMRIGPAANKNAL 237
[Close]
BLAST of Spo17731.1 vs. TAIR (Arabidopsis)
Match: AT4G27000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 141.0 bits (354), Expect = 9.800e-34
Identity = 76/163 (46.63%), Postives = 95/163 (58.28%), Query Frame = 1 

		  

Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +Y+ N F  TGE               E YGF+EF  H TA R LQT N   MP+ EQ +
Sbjct: 94  NYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAF 153

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W   G GE+   +  ++T+ V DLA DVTD+ L ETF+A Y S+K      DR TGR
Sbjct: 154 RLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGR 213

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRKVL 176
           +KGYGFV F DE+EQ+R M+EMNG  C  R MR G  A +K L
Sbjct: 214 SKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL 256
[Close]
BLAST of Spo17731.1 vs. TAIR (Arabidopsis)
Match: AT5G19350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 140.6 bits (353), Expect = 1.300e-33
Identity = 75/161 (46.58%), Postives = 96/161 (59.63%), Query Frame = 1 

		  

Query: 33  DYICNCFAHTGEL--------------ECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNY 92
           +Y+ +CF+ TGEL              E YGF+EF +H  A R LQT N T MP  E  +
Sbjct: 38  NYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTF 97

Query: 93  RPDWVFFGTGEKWGEDAFDYTILVRDLAADVTDYTLQETFRARYLSIK------DRQTGR 152
           R +W  FG+G+K      D++I V DLA DVTDY LQETFR  Y S++      D  TGR
Sbjct: 98  RLNWASFGSGQKVDAGP-DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGR 157

Query: 153 AKGYGFVCFTDENEQVRVMSEMNGMVCPGRAMRIGADATRK 174
           +KGYGFV F +E+E+ R M+EMNG+ C  R MRI A   +K
Sbjct: 158 SKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKK 197
[Close]
BLAST of Spo17731.1 vs. TAIR (Arabidopsis)
Match: AT1G47500.1 (RNA-binding protein 47C')

HSP 1 Score: 133.7 bits (335), Expect = 1.600e-31
Identity = 70/140 (50.00%), Postives = 87/140 (62.14%), Query Frame = 1 

		  

Query: 41  HTGELECYGFLEFTTHVTAGRILQTLNNTLMPNVEQNYRPDWVFFGTGEKWGED-AFDYT 100
           H G  E YGF+EF +H  A ++LQ  N   MPN +Q +R +W  F TGEK  E+   D +
Sbjct: 141 HNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLS 200

Query: 101 ILVRDLAADVTDYTLQETFRARYLSIK------DRQTGRAKGYGFVCFTDENEQVRVMSE 160
           I V DLA DV+D  L ETF  +Y S+K      D  TGR+KGYGFV F DENE+ + M+E
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260

Query: 161 MNGMVCPGRAMRIGADATRK 174
           MNG+ C  RAMRIG    RK
Sbjct: 261 MNGVKCSSRAMRIGPATPRK 280
The following BLAST results are available for this feature:
BLAST of Spo17731.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902184772|gb|KNA10364.1|4.2e-5571.4hypothetical protein SOVF_1450... [more]
gi|30524689|emb|CAC85246.1|2.0e-4961.0salt tolerance protein 6 [Beta... [more]
gi|731369905|ref|XP_010665562.1|2.0e-4961.0PREDICTED: polyadenylate-bindi... [more]
gi|629104705|gb|KCW70174.1|4.1e-4249.0hypothetical protein EUGRSUZ_F... [more]
gi|976901589|gb|KVH89625.1|1.3e-4049.0Nucleotide-binding, alpha-beta... [more]
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BLAST of Spo17731.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QSW8_SPIOL3.0e-5571.4Uncharacterized protein OS=Spi... [more]
Q84LL7_BETVU1.4e-4961.0Salt tolerance protein 6 OS=Be... [more]
A0A0J8E0W4_BETVU1.4e-4961.0Uncharacterized protein OS=Bet... [more]
A0A059BW09_EUCGR2.9e-4249.0Uncharacterized protein OS=Euc... [more]
A0A103XF54_CYNCS9.2e-4149.0Nucleotide-binding, alpha-beta... [more]
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BLAST of Spo17731.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RBP45_NICPL1.1e-3953.4Polyadenylate-binding protein ... [more]
RB45B_ARATH1.3e-3550.0Polyadenylate-binding protein ... [more]
RBP47_NICPL1.4e-3452.1Polyadenylate-binding protein ... [more]
RB45A_ARATH1.3e-3251.7Polyadenylate-binding protein ... [more]
RP45C_ARATH1.7e-3246.6Polyadenylate-binding protein ... [more]
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BLAST of Spo17731.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT1G11650.27.2e-3750.0RNA-binding (RRM/RBD/RNP motif... [more]
AT5G54900.17.5e-3451.7RNA-binding protein 45A[more]
AT4G27000.19.8e-3446.6RNA-binding (RRM/RBD/RNP motif... [more]
AT5G19350.11.3e-3346.5RNA-binding (RRM/RBD/RNP motif... [more]
AT1G47500.11.6e-3150.0RNA-binding protein 47C'[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 100..164
score: 5.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 99..167
score: 6.4
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 98..171
score: 12
IPR012677Nucleotide-binding alpha-beta plait domainGENE3D3.30.70.330coord: 39..167
score: 5.8
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 92..172
score: 2.85
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 75..173
score: 1.1
NoneNo IPR availablePANTHERPTHR24012:SF333POLYADENYLATE-BINDING PROTEIN RBP45B-RELATEDcoord: 75..173
score: 1.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005886 plasma membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0010181 FMN binding
molecular_function GO:0016491 oxidoreductase activity
RNA-Seq Expression