Spo17852 (gene) | SpinachBase

Overview


Name	Spo17852
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr2 : 54869120 .. 54873845 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTGAAACTTGGAAGAAATTCGAGTGATATAACAATTTGGAAGAAGATGAAAGTGGTTAAAAATGGAGAAACTAGAGAGCCTAGCTGGTAACACAAGTAACAAGTGAAAATCTTTCTCTCTCCTTCTCAATCCATCTAGCCAGTCACTCCCACTTTCTCTCTCCTTCTAAACCCATTTTATGCAAATTTTAGCCTCTCACTTTCTCTCTCCTTCTAAACCCATCTTATTCAAACTTTAGCCTCACACTTTCTCCTCTATACCTTTACATAAATTTTGTTAGGGCGGTGATAAGCGTCGCAAGTTAATCTTATTTACAATGGGTGTACAATAAATATTGTACATCGGAGTAAAAGTTAACTCAAAATGCTTAAAAGTTAAGCATATATATGTAAAAGTTATCTATTTAATAGTGATAAATTTTTTCATTTTAGTAAAACTTATTTATTCAAAATAACTAATATTGTATAAAATTAATCATTTAACCCTTTAAAATGTTTATCTATCAAATTTTTTTACTAATATAAAAGTTAATCAAAACTAGATTAAAGTTACAAAAAGAATGGTTAAAGTTATCTTGGTGTACAATATATTTGTTGTACACCTTGTGCGCACAAGACCTTTTGTAACAATATTTAGTTGTCGTAATTCCACGTACCAGATTTTAAACGGTACATACGAGTGCCACGTAGGTCATGCGTCGTCAAAATAGTTTTACTATCAAAATAATACTTTTACTATCAAAGTAATATTTAGTAGTCGATAGAAAAAACAAATATTTTATATACAAATCATAAATATTTTTTGAAATAAAAATTATATTATTCAATTTATAAATTAGAATATTAAGATTTTCCTAACTTTATTGTAACATATACGAAATATAATTTCGGGGTTAGAGTAATTGGAGTACTTGAGGTAAAACATAACGAACTAATACCGAACCGCTGAACAAGCCAATGCCATTAAGGCTCCGTTTGGTAAGGCGTAAAACGTTTTCATTGTAAAATGATTTTCCACGGAAAACAGTTTCAAGGGAAAACACAATTCCAAACTAGTTTTCCTTTGTTTGGTAACTTAAAGGAAAATGGGAGAAGGTGGTGAAGATTGAGGGGAAGAAAAGAGAGGGAGGTAAGAAGGAAAGAAGGAAAAGTGGTTTCCCTCCCTTTCAAATGGAAAAGGGTTTTCCATATTTGAGAGAGTAATGGAAAATTGTTTTCCATCCTTTACCCAACCAAACAACGTAAAATGATTGAAAAGGGGAAAATTGTTTCCATGAAAACGTTTTACGCCCTACCAAACGGAGCCTAAGTATTTACGGAAAATTGTGGAGCACTCATTCTATACACCTACTACAGTTGTATAGCGCGTGTACTCCTTGACCTTTTTCGTCACATTTAGGCCCTGTTTGGCAATTGGCTGTTGGCTGTTGGCGGCTGTCGGCTGTTTTACTTGGCTGGTTTGACTGGCTGTTCAAGTTGGCTGCTTTTGTTGGCTGTTTGACTATGGATTGGTTACAAATATGTTTGGTAAAATCAGTTGTTGGCTGTTGGCTGTAGCTATGTAAAATGACATTTAAGGACATTTAATGTCTTTTATTCATTTTTCAATACATACTGTGTATTGTGTACGGAGTAAAACGTAATTACAAATAAATAAATATAAATTAAAAATAAATTACTTTATGCAATAGTATTAATAAATTATTATTTTAATTAATAATTACGGAGTAATAATTAATAACTAATAATAAATAATCAATAATTAATAATTAATAATTAATAATTAATGATTAATTATTAATTAATTATTCACTTTTAGTTATTAGTCATTAATTAATACTCCGTAATTATTAACTTTTAATTATTAATTATTAATTATTAATTATTAACTATTACTCCCTCCATTCCTTTTTGTTGTACCCATAAGGAATGTTGGGGGTTTTTTAAGAAAACTGAAAATTATTAANTTATTAATTATTAATTATTAATTATTGATTATTGATTATTGATTATTGATTATTGATTATTGATTATTGATTATTAATTATTGATTATTAATTATTAATTATTAATTATTGATTATTAATTATTAATTATTAATTATTAGTTAATTAGTAAAAAACAAGGACAAAAAAGTAATTTAGATAGTGAAAAGCCAAAAGCCAACTCCAAAAAGCTAGTGTTACTAGCTTTTCATTTTTGGCGGAAAAGCTGGCTTTTCAGCAAGCTAAAAAGCCAGTTACCAAACATATTTTTTGGCTGTTTGACCAGATTAAAAAGCAGCCAAAAGCCAACCAAAAAGCCAGCAAAAAGCCATTTGCCAAACAAGGCCATAATCTTCTCACAATGCTTTGTAGTTCGCTTGGTGGGGAAATTAGTATAACATTTTGATTCATTNTAATCTTCTCACAATGCTTTGTAGTTCGCTTGGTGGGGAAATTAGTATAACATTTTGATTCATTGAATTTCATTCATAACTAAAACAAATAGAAAGCATAACATGGTGTTTTACATTCAGTTATGCTATAATGCATCATTTTGTATTAATTGTCCCCTTCTTTTCTCTGCCAACCTAGGTGTACGGATGTCATTCATTCCCTTGAGAGAGTAGGAGGTTCTTTTCTAAAGCAGTCAGTCTATAAGGTTTGTGCTCTTCTTGGAGTCAACTCCCTCAATTTTATTTTAGTTTGGATGTTTAAGCCTTTTGAACAAGGATTAAGGATTTAAGGGTGAATATATTAGGCTTAGTTTCTCTGTCTATGATTATTAATCCATGTCACTGAAAATTGGTGCTTGCATTCTCAAAATATTTTAATTGGAATTTGTTGTAGCTTTGCGAAATAATTCCCACGAAGACACATGTCTTGTTATTTCTTGTTATTTGATAATTTTTTATGCTTAATTCCAAATTTTCTTGTTTTGTTTAATATGTATAAGTAAACCGGTGAATAAAATAATCTCTTGGTACTCTCTTAAATAGGTGATTTAGATGGATCATACTAGCATACTAACTTCTTGGAACACCTAGACCGAATTAATTCGTTTATGTCATTTCTTTGGGTTACAAAACCATTTAGTTTGTTCATTTTTGGGTACTTGATCAGTTGATCACTACTCGGATTTTTTTGGGTACTTGATTGCGATAAAGGTCGATTGAGGAGTTTCTCCATGTGATTGACTGAATGTTGCTTCCCAAAGAAGTATTCTTAGGCTGGTTGAGATTTTGTTACCTGTTTCTAATAGGAGACGCCTGCAAAGGTAGGAGTTTGTTGTTGTCATATAGTTCAATCCTCTTGAAAATTTTGAGAATGAAAAGATATAAAAATTGAGTAAGGAATCTCTGCAACTAATGATGAGAACCATCCTTTAAGAGAAGAAGTGTATGCTACTGATGTTAGAACTTTGCCTCCTGGTAATCTACACCTTGGTCAATATGTACAAGTGTCATGAGGAAATAGATGTGTGTTGGGTGGGTGGTGGATAGAAATCTCCAAAGTTCTGAATAAAAGAAGTACATTGTGCAATTTGCTTTTACAGTTGATAAACGGGTTTGAGATGTCACCAAGATTGATTCACGGAAAATGGATAACCTCCAAGGTTTCCTCTTTCTTTTCTTGTTTGATAAATCTTAGTTTTCCTTGTATTATAGACCTCCAAGTTCAATGATATTTCCTCAGATCAGATTCCTTAGAAGTACAGAGTATGTTTACTTATTGCCCATAAAGTATCAAAGAGAAGGCCCTGAGCCCACAGAGAGCCGTGCTTACACAGACCTCTATTACTTTGAGAAATAGAAAACCATTATAGGAAGAAATTGTCAGTCTCATTGAAGCTGCTTCAATTTTTTGAAAAAAAGGATGCAGTATTCAGAATTCTCTCCAGTCACAGGGCCACACCAAAACAACCCCCCTTAGGCTAGATTTCTGTCCCAAATTAACTAGAAGAGCTTAACCTGTGATGTTTTTTTTCAACATGGAAATCTATGCTTCTGCTGTTGTATTGTAAATGGGAAATTCTATCCTAATCAGACTAGAATTAATAGAGATTGAAAACTTAAACAAAGTGGTGGCAAGCTGCAAACGATATTCACTTAATGTGTTCATGTTGTTCTATGTACTACATACATATCACCTTTTATTACAGGCTGATGCAAAACTATTCGAGCCCGTGCATGAGCTTCTCCGCAGTCCGCACCAAACATGCCCTGGTGGAGGTTGGACCAATGGCATATTTCTCCAAGTGTAATCTCTTGCAATGGTGCTTCAGACAAGTGGTCATGGAGGATAACATCCCCATTTTCTTCCTCCTTTCATCCACCGTGTTCATTGCTAAGCTCCATGCGTAAAGTGCTATGTGTATGGCTTTTGCTAGCAAACTTTTGTTATGTTGTATTGCTTCCAAGAAATTGTTATAAATTGTTATTGGTAATATTAACTCTTATTATTTTGAGTTTGCAATTGGATGTCCCTAGGAAATACACGTACAACTTCTGATTTGTTATTGTACTTTCGAACTATCAATGCACCTAAATTATAAGTGTATTTATAGATTTGTTGTATACTTCCATGCATGTAAATCTAATTTTAGCATAACAATTCTAGCATTTACCATCTTCCTTAAACTTACCATAATATTGAAAGTGTATGTGTTTTACTGAACATTTTTACAAGACGAATTTCTATACCTTTGGGGGACCGTGCGCTAGTAAGTATAAGGGAAGG

mRNA sequence

ATGCAAGTGAAACTTGGAAGAAATTCGAGTGATATAACAATTTGGAAGAAGATGAAAGTGGTTAAAAATGGAGAAACTAGAGAGCCTAGCTGGTGTACGGATGTCATTCATTCCCTTGAGAGAGTAGGAGGTTCTTTTCTAAAGCAGTCAGTCTATAAGGCTGATGCAAAACTATTCGAGCCCGTGCATGAGCTTCTCCGCAGTCCGCACCAAACATGCCCTGGTGGAGGTTGGACCAATGGCATATTTCTCCAAGTGTAATCTCTTGCAATGGTGCTTCAGACAAGTGGTCATGGAGGATAACATCCCCATTTTCTTCCTCCTTTCATCCACCGTGTTCATTGCTAAGCTCCATGCGTAAAGTGCTATGTGTATGGCTTTTGCTAGCAAACTTTTGTTATGTTGTATTGCTTCCAAGAAATTGTTATAAATTGTTATTGGTAATATTAACTCTTATTATTTTGAGTTTGCAATTGGATGTCCCTAGGAAATACACGTACAACTTCTGATTTGTTATTGTACTTTCGAACTATCAATGCACCTAAATTATAAGTGTATTTATAGATTTGTTGTATACTTCCATGCATGTAAATCTAATTTTAGCATAACAATTCTAGCATTTACCATCTTCCTTAAACTTACCATAATATTGAAAGTGTATGTGTTTTACTGAACATTTTTACAAGACGAATTTCTATACCTTTGGGGGACCGTGCGCTAGTAAGTATAAGGGAAGG

Coding sequence (CDS)

ATGCAAGTGAAACTTGGAAGAAATTCGAGTGATATAACAATTTGGAAGAAGATGAAAGTGGTTAAAAATGGAGAAACTAGAGAGCCTAGCTGGTGTACGGATGTCATTCATTCCCTTGAGAGAGTAGGAGGTTCTTTTCTAAAGCAGTCAGTCTATAAGGCTGATGCAAAACTATTCGAGCCCGTGCATGAGCTTCTCCGCAGTCCGCACCAAACATGCCCTGGTGGAGGTTGGACCAATGGCATATTTCTCCAAGTGTAA

Protein sequence

MQVKLGRNSSDITIWKKMKVVKNGETREPSWCTDVIHSLERVGGSFLKQSVYKADAKLFEPVHELLRSPHQTCPGGGWTNGIFLQV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo17852.1	Spo17852.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo17852.1 vs. NCBI nr
BLAST of Spo17852.1 vs. UniProtKB/TrEMBL
BLAST of Spo17852.1 vs. ExPASy Swiss-Prot
BLAST of Spo17852.1 vs. TAIR (Arabidopsis)

BLAST of Spo17852.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo17852.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo17852.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo17852.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0006281	DNA repair
biological_process	GO:0036265	RNA (guanine-N7)-methylation
biological_process	GO:0015824	proline transport
biological_process	GO:0006680	glucosylceramide catabolic process
biological_process	GO:0006370	7-methylguanosine mRNA capping
biological_process	GO:0006508	proteolysis
cellular_component	GO:0044464	cell part
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0008026	ATP-dependent helicase activity
molecular_function	GO:0017111	nucleoside-triphosphatase activity
molecular_function	GO:0005488	binding
molecular_function	GO:0004482	mRNA (guanine-N7-)-methyltransferase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0004185	serine-type carboxypeptidase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004348	glucosylceramidase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008233	peptidase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo21823	0.75	Barchart \| Table
Spo26995	0.75	Barchart \| Table
Spo08283	0.71	Barchart \| Table
Spo19793	0.70	Barchart \| Table
Spo02887	0.70	Barchart \| Table
Spo10860	0.69	Barchart \| Table
Spo23771	0.69	Barchart \| Table
Spo26073	0.68	Barchart \| Table
Spo13426	0.68	Barchart \| Table
Spo07824	0.68	Barchart \| Table
Spo01823	0.68	Barchart \| Table
Spo17685	0.68	Barchart \| Table
Spo16218	0.68	Barchart \| Table
Spo14240	0.67	Barchart \| Table
Spo01196	0.67	Barchart \| Table
Spo12507	0.67	Barchart \| Table
Spo00173	0.67	Barchart \| Table
Spo19013	0.67	Barchart \| Table
Spo19609	0.67	Barchart \| Table
Spo25738	0.67	Barchart \| Table
Spo26481	0.67	Barchart \| Table
Spo26990	0.67	Barchart \| Table
Spo17220	0.66	Barchart \| Table
Spo02340	0.66	Barchart \| Table
Spo07079	0.66	Barchart \| Table
Spo21422	0.66	Barchart \| Table
Spo05269	0.66	Barchart \| Table
Spo03225	0.66	Barchart \| Table
Spo15089	0.66	Barchart \| Table
Spo08648	0.66	Barchart \| Table
Spo17784	0.65	Barchart \| Table
Spo18637	0.65	Barchart \| Table
Spo10329	0.65	Barchart \| Table
Spo03110	0.65	Barchart \| Table
Spo13329	0.65	Barchart \| Table
Spo20503	0.65	Barchart \| Table
Spo13705	0.65	Barchart \| Table