Spo17884 (gene) | SpinachBase

Overview


Name	Spo17884
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	RNA recognition motif-containing protein
Location	chr2 : 54767739 .. 54770598 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATAACAGTGACTAACCCTCTCATCCCTGGTACTCCAATTAACAACAAAAGGCCGGCAGAAAAATCTATTTTTACTCCTAAAGGTTAAATTCAAACCCCCAAATTACACCGTATTAACTATTAAGTATTGATTAAGTGAACAATTACTATGCCGAGATCAATTTAGTTACATTTGTCATTCGAGTTGCCACTCTATTTCCTAAGTTGAACTTGTTAACCAAATACTACCCGCAAGTAACACTGTAACACACAGTAGAGTTGAGAGGCGAATAAACGTTGACTATCAACGACTCTACAGTCCAGAATTTCAAGGGTTTAGTTTCTTCATTTCCAGAAATTTACAGAGAAACCACTCTTCATCAATATTAAGCTTATCTGCTGTTGCAATGTCGGAAAATCCAAAATCCACAGTTTACGTAGGTCAGTCTTTCTTCATCTTCTTGTTTCTTTCTCTCTCCTCTCTTGATTATCAGTTCAATGGCTGATTTTTAGTTTATGCTTTTGATTCTTCACGAAACCCTACTTTTATGTTGTTACACTATTTTATCGCTCCACCTATTGTTTTCAGTTTGATTCCATGAACTTTTATACTGGATGCGACTTGGTTTGAGGTTACTCAGTGATAGGTTGATTGCTTTTTTAATTGGAAAATTTTTGGGGTTTTAGGGTTTTATTGCTTTCTGGTTTATGGGATTGTAAATTTGCAACTACGCCAGCTTTAATTGACAGTTTGAATTTGTGACTTCGCAATTTTATCAATTGAATTGTCCAATTTTGATCATCAAAGCCCGGGCTCTCTTAAAGAAAGTCGAAATGGACACAGAAACTCAACGCCACTATTCTACCATTCTCGTGGAATGGAATTGGGCGATCTTGTAAATAGACATTGCAAACCCTTTCCTGTAGGTCCTCATTTGTTGGGTTTCGATGGTTTTGGGAAAGAAAAAAGGTTGATGATGGACTTAACTCTTAAACACTCTGTACTTGATGAATTTTTTAACTTTACCGGCTAAGATGCTCACTTTTATGAAGAAGCATACTTTCTTTCTTTCTTTGGAGGTAGCGCCTTTGATTTAATTAGCCTTACAGTGAGATGGAGTTTCACCAAAATGACTGATTTTTTTGGAATTTTGTTGTTCAAAAGTACGAGGATCCATGTTAAATTGCTAAATCCATATCTGAATGGCTAAACAACAACTTATAATTGGTGAATTCATAGGTTCAATTCCTATAGGGTATATGCGGACTCCCAAGAAGTCTGATAAATTGTCTTATAGTCTGTATCAATAGCAAGGAACTTTTTTGTGGTAAATTTGTAGTCCATTCTAATTTTCTTAACTATTTTGTACACAGGCAATTTGGATGAGAGAGTTACTGATAGGGTCCTATACGACATCCTTATACAAGCAGGCCGAGTAGTTGAATTATACATTCCCCGAGACAGGGAAACAGATAAACCTAAGGGTTTTGCCTTTGCGGAGTATGAATCAGAAGAGATTGCTAATTATGCTGTCAGGCTTTTCTCTGGCCTGGTGACTTTGTACAACCGGACGTTGAGATTTGCGGTCCGTCCTCTACTTCTCTCTTCGTATATTTTCATTGATCCTGACATTTTGTAGGGGCTTTGTGATGCTATTCTTGGTCTTTCTCTTGTTACTTTCCTCATTGTGGATTGTGGTATCTTACGGATTGCGTGTTGTATGACCTGTTTATCGTACAATGAGAGGAATTTCGGGGGTGCCCTTAGTATTAGAGAATTGATCTTTATTTCCAAGGGTGTATTATGGCACCATGATTAGGGAAATTAACCTATCTTGTACTCCACATTCTTGTTTGATTGGTACTATTGTTGTAGAATAAGCACAGAATCATTACAGTTGATTAGCTAGCTGTTTCCTTGTTGGTAATAGTTTGGTTTTGTGGACAGATCTCTGGGCAAGATAAGGCATCTTCTAACACAACCTCTACATCGATGCACACATCAAATTCACCCCACAAGTCCAGGTTTCATCACGTACCTTTTAACAATATGGAAGATCCTCATCATCCCTCCAGGTTGTCATCATCTAGTAGATTTCCAGCGAACCCAGGCCGTTACGAGCCAGGTAATCTAATTTTCTGAGTGTTTCTGCCTTTTCCCCTCTCTCCTTTTTGCTTATTGATGTGTATTCACTGGTTCACTTTTCGTTTGCCCTCTATTTCATTCATTTCATTGAATTTCTCTTTGTTTGCTTGTACGTTTGTTAACTTCAATTCTAAATAGTATTATTCTTTTCCATTCAGAGCTGCTCCCCCCTGGTGTAGAACAAGATTCTAGTTCGTTTAGGTCTCGTGATGGCAACAGTCATGATTACTCACGAAGAGTATTTGGGGCAAGTTTGGACAGTATTGGCCGCTCTAGGCCGGGGCGCTATTAATCAAGTAACCTAATTACTTACCCTTCTTATGAACTTCTCCAAGTATGGTTTAGATGCATGTCTGACCTGTAGATTCAGATTGGCTAGTCTAGTTTATTACTTGTAGTACAGGATTTGGGTCAGTAGAAAAATATTGTAATGCTATCGTAATGGCTACCTTAATTGGGTAAGTAAATGTATCAGACCTGTTTTCTTATGTTGCTTTATGATACATTCATACTTCTTTTTTGTTATTTGGATGTGCAATGATGAAGTAACTCTAAAATAATGGATTATGCGTTCCCTAACTCATGAATAACAGTTTGAGGTCAATGGTTGATTCATACTTCCTCGGACCTATGCAGTTATGGATGTTAGATAGTGTAGTATGGTGTATTGGTGTGCTTAGTGTTGTAAGCGAAGTTAATTTTGTTTGAAGGGACTGAAAAGGACTGCTAGGTGA

mRNA sequence

TGATAACAGTGACTAACCCTCTCATCCCTGGTACTCCAATTAACAACAAAAGGCCGGCAGAAAAATCTATTTTTACTCCTAAAGGTTAAATTCAAACCCCCAAATTACACCGTATTAACTATTAAGTATTGATTAAGTGAACAATTACTATGCCGAGATCAATTTAGTTACATTTGTCATTCGAGTTGCCACTCTATTTCCTAAGTTGAACTTGTTAACCAAATACTACCCGCAAGTAACACTGTAACACACAGTAGAGTTGAGAGGCGAATAAACGTTGACTATCAACGACTCTACAGTCCAGAATTTCAAGGGTTTAGTTTCTTCATTTCCAGAAATTTACAGAGAAACCACTCTTCATCAATATTAAGCTTATCTGCTGTTGCAATGTCGGAAAATCCAAAATCCACAGTTTACGTAGGCAATTTGGATGAGAGAGTTACTGATAGGGTCCTATACGACATCCTTATACAAGCAGGCCGAGTAGTTGAATTATACATTCCCCGAGACAGGGAAACAGATAAACCTAAGGGTTTTGCCTTTGCGGAGTATGAATCAGAAGAGATTGCTAATTATGCTGTCAGGCTTTTCTCTGGCCTGGTGACTTTGTACAACCGGACGTTGAGATTTGCGATCTCTGGGCAAGATAAGGCATCTTCTAACACAACCTCTACATCGATGCACACATCAAATTCACCCCACAAGTCCAGGTTTCATCACGTACCTTTTAACAATATGGAAGATCCTCATCATCCCTCCAGGTTGTCATCATCTAGTAGATTTCCAGCGAACCCAGGCCGTTACGAGCCAGAGCTGCTCCCCCCTGGTGTAGAACAAGATTCTAGTTCGTTTAGGTCTCGTGATGGCAACAGTCATGATTACTCACGAAGAGTATTTGGGGCAAGTTTGGACAGTATTGGCCGCTCTAGGCCGGGGCGCTATTAATCAAGTAACCTAATTACTTACCCTTCTTATGAACTTCTCCAAGTATGGTTTAGATGCATGTCTGACCTGTAGATTCAGATTGGCTAGTCTAGTTTATTACTTGTAGTACAGGATTTGGGTCAGTAGAAAAATATTGTAATGCTATCGTAATGGCTACCTTAATTGGGTAAGTAAATGTATCAGACCTGTTTTCTTATGTTGCTTTATGATACATTCATACTTCTTTTTTGTTATTTGGATGTGCAATGATGAAGTAACTCTAAAATAATGGATTATGCGTTCCCTAACTCATGAATAACAGTTTGAGGTCAATGGTTGATTCATACTTCCTCGGACCTATGCAGTTATGGATGTTAGATAGTGTAGTATGGTGTATTGGTGTGCTTAGTGTTGTAAGCGAAGTTAATTTTGTTTGAAGGGACTGAAAAGGACTGCTAGGTGA

Coding sequence (CDS)

ATGTCGGAAAATCCAAAATCCACAGTTTACGTAGGCAATTTGGATGAGAGAGTTACTGATAGGGTCCTATACGACATCCTTATACAAGCAGGCCGAGTAGTTGAATTATACATTCCCCGAGACAGGGAAACAGATAAACCTAAGGGTTTTGCCTTTGCGGAGTATGAATCAGAAGAGATTGCTAATTATGCTGTCAGGCTTTTCTCTGGCCTGGTGACTTTGTACAACCGGACGTTGAGATTTGCGATCTCTGGGCAAGATAAGGCATCTTCTAACACAACCTCTACATCGATGCACACATCAAATTCACCCCACAAGTCCAGGTTTCATCACGTACCTTTTAACAATATGGAAGATCCTCATCATCCCTCCAGGTTGTCATCATCTAGTAGATTTCCAGCGAACCCAGGCCGTTACGAGCCAGAGCTGCTCCCCCCTGGTGTAGAACAAGATTCTAGTTCGTTTAGGTCTCGTGATGGCAACAGTCATGATTACTCACGAAGAGTATTTGGGGCAAGTTTGGACAGTATTGGCCGCTCTAGGCCGGGGCGCTATTAA

Protein sequence

MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEIANYAVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTSMHTSNSPHKSRFHHVPFNNMEDPHHPSRLSSSSRFPANPGRYEPELLPPGVEQDSSSFRSRDGNSHDYSRRVFGASLDSIGRSRPGRY

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo17884.1	Spo17884.1	mRNA

Homology

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BLAST of Spo17884.1 vs. NCBI nr
Match: gi|902197116|gb|KNA13327.1| (hypothetical protein SOVF_116030 [Spinacia oleracea])

HSP 1 Score: 369.4 bits (947), Expect = 3.700e-99
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1

		  
Query: 1   MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEI 60
           MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEI
Sbjct: 1   MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEI 60

Query: 61  ANYAVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTSMHTSNSPHKSRFHHVPFNNMEDP 120
           ANYAVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTSMHTSNSPHKSRFHHVPFNNMEDP
Sbjct: 61  ANYAVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTSMHTSNSPHKSRFHHVPFNNMEDP 120

Query: 121 HHPSRLSSSSRFPANPGRYEPELLPPGVEQDSSSFRSRDGNSHDYSRRVFGASLDSIGRS 180
           HHPSRLSSSSRFPANPGRYEPELLPPGVEQDSSSFRSRDGNSHDYSRRVFGASLDSIGRS
Sbjct: 121 HHPSRLSSSSRFPANPGRYEPELLPPGVEQDSSSFRSRDGNSHDYSRRVFGASLDSIGRS 180

Query: 181 RPGRY 186
           RPGRY
Sbjct: 181 RPGRY 185

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BLAST of Spo17884.1 vs. NCBI nr
Match: gi|731312927|ref|XP_010677062.1| (PREDICTED: spliceosome-associated protein 49 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 291.2 bits (744), Expect = 1.300e-75
Identity = 148/186 (79.57%), Postives = 164/186 (88.17%), Query Frame = 1

		  
Query: 1   MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEI 60
           MS NPK TVYVGNLDERVTDRVLYDILIQAGR+V+LYIPRDRET+KPKGFAFAEYESEEI
Sbjct: 1   MSGNPKCTVYVGNLDERVTDRVLYDILIQAGRIVDLYIPRDRETEKPKGFAFAEYESEEI 60

Query: 61  ANYAVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTSMHTSNSPHKSRFHHVPFNNMEDP 120
           ANYAV+LFSGLVTLYNRTL+FAISGQDKAS+N   TS   ++SP +SRF  +P+NNMEDP
Sbjct: 61  ANYAVKLFSGLVTLYNRTLKFAISGQDKASANMAPTSTLPASSPLRSRFRPIPYNNMEDP 120

Query: 121 HHPSRLSSSSRFPANPGRYEPELLPPGVEQDSSSFRSR-DGNSHDYSRRVFGASLDSIGR 180
           HH +RLSSSSR P NPG YE ELLPPGVEQDSS+FRSR D  +HDYSRRVFGA+LD + R
Sbjct: 121 HHSTRLSSSSRLPMNPGHYESELLPPGVEQDSSAFRSRHDSYNHDYSRRVFGAALDGMNR 180

Query: 181 SRPGRY 186
           SR GRY
Sbjct: 181 SRTGRY 186

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BLAST of Spo17884.1 vs. NCBI nr
Match: gi|590646635|ref|XP_007031677.1| (RNA recognition motif-containing protein isoform 1 [Theobroma cacao])

HSP 1 Score: 223.4 bits (568), Expect = 3.300e-55
Identity = 119/186 (63.98%), Postives = 139/186 (74.73%), Query Frame = 1

		  
Query: 1   MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEI 60
           M+ N   +VY+GNLDERV+DRVLYDILIQAGRVV+LYIPRD+ETDKPKGFAFAEYE+EE+
Sbjct: 1   MAGNSGCSVYIGNLDERVSDRVLYDILIQAGRVVDLYIPRDKETDKPKGFAFAEYETEEV 60

Query: 61  ANYAVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTSMHTSNSPHKSRFHHVPFNNMEDP 120
           A YAVRLFSGLVTLYNRTL+FAISGQDKAS N  + +M  SNS HKSR +    N+ME  
Sbjct: 61  AEYAVRLFSGLVTLYNRTLKFAISGQDKASQNPPNAAMAASNSSHKSRHYSGALNHMEIS 120

Query: 121 HHPSRLSSSSRFPANPGRYEPELLPPGVEQDSSSFRSR-DGNSHDYSRRVFGASLDSIGR 180
             P RLS+  R P NP  Y      PGV   S+ + S   G +++Y RRVFGA+LDSIGR
Sbjct: 121 QQPMRLSTPCRIPDNPSHYSQVPPLPGVSHHSNEYGSHFSGTNYEYGRRVFGATLDSIGR 180

Query: 181 SRPGRY 186
            R  RY
Sbjct: 181 LRSRRY 186

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BLAST of Spo17884.1 vs. NCBI nr
Match: gi|697132427|ref|XP_009620259.1| (PREDICTED: splicing factor 3B subunit 4-like isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 216.9 bits (551), Expect = 3.100e-53
Identity = 120/195 (61.54%), Postives = 149/195 (76.41%), Query Frame = 1

		  
Query: 1   MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEI 60
           M+ENP  T+YVGNLDERV+DRVLYDILIQAGRVV+LYIPRD+ETDKPKGFAFA+YE+EEI
Sbjct: 1   MAENPNCTIYVGNLDERVSDRVLYDILIQAGRVVDLYIPRDKETDKPKGFAFAKYETEEI 60

Query: 61  ANYAVRLFSGLVTLYNRTLRFAISGQDKASSNTT-STSMHTSNSPHKSRFHHVPFNNMED 120
           A+YAV+LFSGLVTLYNRTL+FAISGQDK S+N++ +T   T N P + R  HVP+N+ E 
Sbjct: 61  ADYAVKLFSGLVTLYNRTLKFAISGQDKPSNNSSIATPPPTLNIPSRPRPLHVPYNDKEI 120

Query: 121 PHHPSRLSSSSRFPANPGRYEPELLPPGVEQDSSS--------FRSR-DGNSHDYSRRVF 180
             +  RLS+S RF  +   +    +PPGV  + S+        +RS  DGN++DY RRVF
Sbjct: 121 SPNSVRLSTSCRFSEHQTNFTQVSVPPGVSVNQSNGYRSPYDGYRSHYDGNNYDYGRRVF 180

Query: 181 GASLDSIGRSRPGRY 186
           G +L+SI RSR GRY
Sbjct: 181 GDALNSITRSRLGRY 195

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BLAST of Spo17884.1 vs. NCBI nr
Match: gi|971565725|ref|XP_015168104.1| (PREDICTED: RNA-binding protein 7 isoform X1 [Solanum tuberosum])

HSP 1 Score: 216.1 bits (549), Expect = 5.200e-53
Identity = 118/194 (60.82%), Postives = 145/194 (74.74%), Query Frame = 1

		  
Query: 1   MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEI 60
           M+ENP  TVYVGNLDERV DRVLYDILIQAGRVV+LYIPRD+ETDKPKGFAFA+YE+EEI
Sbjct: 1   MAENPNCTVYVGNLDERVCDRVLYDILIQAGRVVDLYIPRDKETDKPKGFAFAKYETEEI 60

Query: 61  ANYAVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTSMHTSNSPHKSRFHHVPFNNMEDP 120
           A+YAV+LFSGLVTLYNRTL+FAISGQDK S+N+   ++   N P + R H  P+N+ E  
Sbjct: 61  ADYAVKLFSGLVTLYNRTLKFAISGQDKPSNNSPIATLPALNIPSRPRPHPTPYNDKEIS 120

Query: 121 HHPSRLSSSSRFPANPGRYEPELLPPGVEQDSSS--------FRSR-DGNSHDYSRRVFG 180
            + +RLS+S  F  +   Y    +PPGV  + S+        +RS  DGN++DY +RVFG
Sbjct: 121 PNSARLSTSCWFSQHQTNYTQVPVPPGVSVNQSNGYRSPYDGYRSHYDGNNYDYDQRVFG 180

Query: 181 ASLDSIGRSRPGRY 186
           A+LDSI  SR GRY
Sbjct: 181 AALDSITSSRLGRY 194

[Close]

BLAST of Spo17884.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3F0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_116030 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 2.600e-99
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1

		  
Query: 1   MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEI 60
           MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEI
Sbjct: 1   MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEI 60

Query: 61  ANYAVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTSMHTSNSPHKSRFHHVPFNNMEDP 120
           ANYAVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTSMHTSNSPHKSRFHHVPFNNMEDP
Sbjct: 61  ANYAVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTSMHTSNSPHKSRFHHVPFNNMEDP 120

Query: 121 HHPSRLSSSSRFPANPGRYEPELLPPGVEQDSSSFRSRDGNSHDYSRRVFGASLDSIGRS 180
           HHPSRLSSSSRFPANPGRYEPELLPPGVEQDSSSFRSRDGNSHDYSRRVFGASLDSIGRS
Sbjct: 121 HHPSRLSSSSRFPANPGRYEPELLPPGVEQDSSSFRSRDGNSHDYSRRVFGASLDSIGRS 180

Query: 181 RPGRY 186
           RPGRY
Sbjct: 181 RPGRY 185

[Close]

BLAST of Spo17884.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FW68_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g009680 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 8.900e-76
Identity = 148/186 (79.57%), Postives = 164/186 (88.17%), Query Frame = 1

		  
Query: 1   MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEI 60
           MS NPK TVYVGNLDERVTDRVLYDILIQAGR+V+LYIPRDRET+KPKGFAFAEYESEEI
Sbjct: 1   MSGNPKCTVYVGNLDERVTDRVLYDILIQAGRIVDLYIPRDRETEKPKGFAFAEYESEEI 60

Query: 61  ANYAVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTSMHTSNSPHKSRFHHVPFNNMEDP 120
           ANYAV+LFSGLVTLYNRTL+FAISGQDKAS+N   TS   ++SP +SRF  +P+NNMEDP
Sbjct: 61  ANYAVKLFSGLVTLYNRTLKFAISGQDKASANMAPTSTLPASSPLRSRFRPIPYNNMEDP 120

Query: 121 HHPSRLSSSSRFPANPGRYEPELLPPGVEQDSSSFRSR-DGNSHDYSRRVFGASLDSIGR 180
           HH +RLSSSSR P NPG YE ELLPPGVEQDSS+FRSR D  +HDYSRRVFGA+LD + R
Sbjct: 121 HHSTRLSSSSRLPMNPGHYESELLPPGVEQDSSAFRSRHDSYNHDYSRRVFGAALDGMNR 180

Query: 181 SRPGRY 186
           SR GRY
Sbjct: 181 SRTGRY 186

[Close]

BLAST of Spo17884.1 vs. UniProtKB/TrEMBL
Match: A0A061ED96_THECC (RNA recognition motif-containing protein isoform 1 OS=Theobroma cacao GN=TCM_017030 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.300e-55
Identity = 119/186 (63.98%), Postives = 139/186 (74.73%), Query Frame = 1

		  
Query: 1   MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEI 60
           M+ N   +VY+GNLDERV+DRVLYDILIQAGRVV+LYIPRD+ETDKPKGFAFAEYE+EE+
Sbjct: 1   MAGNSGCSVYIGNLDERVSDRVLYDILIQAGRVVDLYIPRDKETDKPKGFAFAEYETEEV 60

Query: 61  ANYAVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTSMHTSNSPHKSRFHHVPFNNMEDP 120
           A YAVRLFSGLVTLYNRTL+FAISGQDKAS N  + +M  SNS HKSR +    N+ME  
Sbjct: 61  AEYAVRLFSGLVTLYNRTLKFAISGQDKASQNPPNAAMAASNSSHKSRHYSGALNHMEIS 120

Query: 121 HHPSRLSSSSRFPANPGRYEPELLPPGVEQDSSSFRSR-DGNSHDYSRRVFGASLDSIGR 180
             P RLS+  R P NP  Y      PGV   S+ + S   G +++Y RRVFGA+LDSIGR
Sbjct: 121 QQPMRLSTPCRIPDNPSHYSQVPPLPGVSHHSNEYGSHFSGTNYEYGRRVFGATLDSIGR 180

Query: 181 SRPGRY 186
            R  RY
Sbjct: 181 LRSRRY 186

[Close]

BLAST of Spo17884.1 vs. UniProtKB/TrEMBL
Match: M1CJV7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400026862 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.600e-53
Identity = 118/194 (60.82%), Postives = 145/194 (74.74%), Query Frame = 1

		  
Query: 1   MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEI 60
           M+ENP  TVYVGNLDERV DRVLYDILIQAGRVV+LYIPRD+ETDKPKGFAFA+YE+EEI
Sbjct: 1   MAENPNCTVYVGNLDERVCDRVLYDILIQAGRVVDLYIPRDKETDKPKGFAFAKYETEEI 60

Query: 61  ANYAVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTSMHTSNSPHKSRFHHVPFNNMEDP 120
           A+YAV+LFSGLVTLYNRTL+FAISGQDK S+N+   ++   N P + R H  P+N+ E  
Sbjct: 61  ADYAVKLFSGLVTLYNRTLKFAISGQDKPSNNSPIATLPALNIPSRPRPHPTPYNDKEIS 120

Query: 121 HHPSRLSSSSRFPANPGRYEPELLPPGVEQDSSS--------FRSR-DGNSHDYSRRVFG 180
            + +RLS+S  F  +   Y    +PPGV  + S+        +RS  DGN++DY +RVFG
Sbjct: 121 PNSARLSTSCWFSQHQTNYTQVPVPPGVSVNQSNGYRSPYDGYRSHYDGNNYDYDQRVFG 180

Query: 181 ASLDSIGRSRPGRY 186
           A+LDSI  SR GRY
Sbjct: 181 AALDSITSSRLGRY 194

[Close]

BLAST of Spo17884.1 vs. UniProtKB/TrEMBL
Match: A0A0D2V1V5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G046700 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.800e-53
Identity = 113/186 (60.75%), Postives = 138/186 (74.19%), Query Frame = 1

		  
Query: 1   MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEI 60
           MS N   +VY+GNLDERV+DRVLYDILIQAGRVV+LYIPRD+ETDKPKGFAF EYE+E++
Sbjct: 1   MSGNSSCSVYIGNLDERVSDRVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYETEDV 60

Query: 61  ANYAVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTSMHTSNSPHKSRFHHVPFNNMEDP 120
           A+YAVRLFSGLVTLYNRTL+FAISGQDK+S N  + +M  +NS +KSR +H   N+ME  
Sbjct: 61  ADYAVRLFSGLVTLYNRTLKFAISGQDKSSQNPANAAMPATNSSYKSRHYHGVVNHMETS 120

Query: 121 HHPSRLSSSSRFPANPGRYEPELLPPGVEQDSSSFRSRDGN-SHDYSRRVFGASLDSIGR 180
             P + S+ SR P  P RY     PPGV    + + S   +  ++YSRRVFGA+ DSI R
Sbjct: 121 QQPKKSSTPSRIPDYPARYSQAPPPPGVSHHFNGYGSHINDIDYEYSRRVFGATWDSISR 180

Query: 181 SRPGRY 186
            R  RY
Sbjct: 181 PRSRRY 186

[Close]

BLAST of Spo17884.1 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap49 PE=3 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 3.400e-12
Identity = 35/99 (35.35%), Postives = 60/99 (60.61%), Query Frame = 1

		  
Query: 4   NPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEIANY 63
           N  +T+Y+GNLDE+VTD +L+++ +QAG VV ++IPRDR  +   GF F E+  E+   Y
Sbjct: 8   NQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEY 67

Query: 64  AVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTSMHTSN 103
           A ++ +  V L+ + +R   + QD+  +     ++   N
Sbjct: 68  ACQILN-QVKLFGKPIRVNRASQDRGVNTLIGANLFVGN 105

[Close]

BLAST of Spo17884.1 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.400e-12
Identity = 32/77 (41.56%), Postives = 57/77 (74.03%), Query Frame = 1

		  
Query: 4  NPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEIANY 63
          N  +TVYVG LDE+V++ +L+++ +QAG VV  ++P+DR T + +G+ F E+ SEE A+Y
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69

Query: 64 AVRLFSGLVTLYNRTLR 81
          A+++ + ++ LY + +R
Sbjct: 70 AIKIMN-MIKLYGKPIR 85

[Close]

BLAST of Spo17884.1 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.400e-12
Identity = 32/77 (41.56%), Postives = 57/77 (74.03%), Query Frame = 1

		  
Query: 4  NPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEIANY 63
          N  +TVYVG LDE+V++ +L+++ +QAG VV  ++P+DR T + +G+ F E+ SEE A+Y
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69

Query: 64 AVRLFSGLVTLYNRTLR 81
          A+++ + ++ LY + +R
Sbjct: 70 AIKIMN-MIKLYGKPIR 85

[Close]

BLAST of Spo17884.1 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.400e-12
Identity = 32/77 (41.56%), Postives = 57/77 (74.03%), Query Frame = 1

		  
Query: 4  NPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEIANY 63
          N  +TVYVG LDE+V++ +L+++ +QAG VV  ++P+DR T + +G+ F E+ SEE A+Y
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69

Query: 64 AVRLFSGLVTLYNRTLR 81
          A+++ + ++ LY + +R
Sbjct: 70 AIKIMN-MIKLYGKPIR 85

[Close]

BLAST of Spo17884.1 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 3.400e-12
Identity = 30/80 (37.50%), Postives = 57/80 (71.25%), Query Frame = 1

		  
Query: 1  MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEI 60
          +  N  +T+YVG LDE+V++ +L+++++QAG VV + +P+DR T   +GF F E+  EE 
Sbjct: 7  VERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEED 66

Query: 61 ANYAVRLFSGLVTLYNRTLR 81
          A+YA+++ + ++ LY + ++
Sbjct: 67 ADYAIKILN-MIKLYGKPIK 85

[Close]

BLAST of Spo17884.1 vs. TAIR (Arabidopsis)
Match: AT4G10110.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 185.3 bits (469), Expect = 3.500e-47
Identity = 107/189 (56.61%), Postives = 132/189 (69.84%), Query Frame = 1

		  
Query: 1   MSENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEI 60
           MS     TVY+GN+DERV+DRVLYDI+IQAGRV++L+IPRD+ETDKPKGFAFAEYE+EEI
Sbjct: 1   MSGTSNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEI 60

Query: 61  ANYAVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTSMHTSNSPHKSRFHHVPFNNMEDP 120
           A+YAV+LFSGLV+LYNRTL+FAISGQDK  SN       ++NS H++R   + F + +  
Sbjct: 61  ADYAVKLFSGLVSLYNRTLKFAISGQDKLQSN-------SANSGHRARPQSLAFEHSDRA 120

Query: 121 --HHPSRLSSSSRFPAN--PGRYEPELLPPGVEQDSSSFRSRDGNSHDYSRRVFGASLDS 180
             HH  R SS    P +  P  Y  E  PPGV          +G S +YSRRV G++LDS
Sbjct: 121 AYHHLERFSSQLISPPSPLPLDYTQEPPPPGVS---------NGASLEYSRRVLGSALDS 173

Query: 181 IGRSRPGRY 186
           I  SRP RY
Sbjct: 181 INHSRPRRY 173

[Close]

BLAST of Spo17884.1 vs. TAIR (Arabidopsis)
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 76.3 bits (186), Expect = 2.300e-14
Identity = 34/87 (39.08%), Postives = 61/87 (70.11%), Query Frame = 1

		  
Query: 4   NPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEIANY 63
           N  +TVYVG LD ++++ +L+++ +QAG VV +Y+P+DR T+  + + F EY SEE A+Y
Sbjct: 22  NQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADY 81

Query: 64  AVRLFSGLVTLYNRTLRFAISGQDKAS 91
           A+++ + ++ L+ + +R   + QDK S
Sbjct: 82  AIKVLN-MIKLHGKPIRVNKASQDKKS 107

[Close]

BLAST of Spo17884.1 vs. TAIR (Arabidopsis)
Match: AT1G71800.1 (cleavage stimulating factor 64)

HSP 1 Score: 54.7 bits (130), Expect = 7.100e-8
Identity = 34/96 (35.42%), Postives = 47/96 (48.96%), Query Frame = 1

		  
Query: 2  SENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEIA 61
          S + +  V+VGN+    T+  L +I  + G VV   +  DRET KPKG+ F EY+ EE A
Sbjct: 4  SSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETA 63

Query: 62 NYAVRLFSGLVTLYNRTLRFAISGQDKASSNTTSTS 98
            A R       +  R LR   +  DK +  T   S
Sbjct: 64 LSARRNLQS-YEINGRQLRVDFAENDKGTDKTRDQS 98

[Close]

BLAST of Spo17884.1 vs. TAIR (Arabidopsis)
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.600e-7
Identity = 26/69 (37.68%), Postives = 39/69 (56.52%), Query Frame = 1

		  
Query: 2   SENPKSTVYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEIA 61
           S  PK+ +YV  L  R T+  L D   Q G ++ + +  D+  ++PKGFAF  YE+EE A
Sbjct: 72  SSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA 131

Query: 62  NYAVRLFSG 71
             A++   G
Sbjct: 132 MKAIQGMHG 140

[Close]

BLAST of Spo17884.1 vs. TAIR (Arabidopsis)
Match: AT4G13860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 49.3 bits (116), Expect = 3.000e-6
Identity = 26/62 (41.94%), Postives = 32/62 (51.61%), Query Frame = 1

		  
Query: 9  VYVGNLDERVTDRVLYDILIQAGRVVELYIPRDRETDKPKGFAFAEYESEEIANYAVRLF 68
          VYVGNL    TD +L +     G VV+  + RDR TD+ +GF F  Y S   A  AV   
Sbjct: 5  VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64

Query: 69 SG 71
           G
Sbjct: 65 DG 66

The following BLAST results are available for this feature:

BLAST of Spo17884.1 vs. NCBI nr
BLAST of Spo17884.1 vs. UniProtKB/TrEMBL
BLAST of Spo17884.1 vs. ExPASy Swiss-Prot
BLAST of Spo17884.1 vs. TAIR (Arabidopsis)

BLAST of Spo17884.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902197116\|gb\|KNA13327.1\|	3.7e-99	100.	hypothetical protein SOVF_1160...	[more]
gi\|731312927\|ref\|XP_010677062.1\|	1.3e-75	79.5	PREDICTED: spliceosome-associa...	[more]
gi\|590646635\|ref\|XP_007031677.1\|	3.3e-55	63.9	RNA recognition motif-containi...	[more]
gi\|697132427\|ref\|XP_009620259.1\|	3.1e-53	61.5	PREDICTED: splicing factor 3B ...	[more]
gi\|971565725\|ref\|XP_015168104.1\|	5.2e-53	60.8	PREDICTED: RNA-binding protein...	[more]

BLAST of Spo17884.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9R3F0_SPIOL	2.6e-99	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8FW68_BETVU	8.9e-76	79.5	Uncharacterized protein OS=Bet...	[more]
A0A061ED96_THECC	2.3e-55	63.9	RNA recognition motif-containi...	[more]
M1CJV7_SOLTU	3.6e-53	60.8	Uncharacterized protein OS=Sol...	[more]
A0A0D2V1V5_GOSRA	4.8e-53	60.7	Uncharacterized protein OS=Gos...	[more]

BLAST of Spo17884.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
SAP49_SCHPO	3.4e-12	35.3	Spliceosome-associated protein...	[more]
SF3B4_MOUSE	3.4e-12	41.5	Splicing factor 3B subunit 4 O...	[more]
SF3B4_RAT	3.4e-12	41.5	Splicing factor 3B subunit 4 O...	[more]
SF3B4_HUMAN	3.4e-12	41.5	Splicing factor 3B subunit 4 O...	[more]
SF3B4_CAEEL	3.4e-12	37.5	Splicing factor 3B subunit 4 O...	[more]

BLAST of Spo17884.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
AT4G10110.1	3.5e-47	56.6	RNA-binding (RRM/RBD/RNP motif...	[more]
AT2G18510.1	2.3e-14	39.0	RNA-binding (RRM/RBD/RNP motif...	[more]
AT1G71800.1	7.1e-8	35.4	cleavage stimulating factor 64	[more]
AT1G73530.1	1.6e-7	37.6	RNA-binding (RRM/RBD/RNP motif...	[more]
AT4G13860.1	3.0e-6	41.9	RNA-binding (RRM/RBD/RNP motif...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..80 score: 6.8
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..82 score: 3.2
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 7..86 score: 15
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 3..84 score: 1.3
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 4..84 score: 9.81
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 1..80 score: 5.3
None	No IPR available	PANTHER	PTHR24012:SF449	SPLICING FACTOR 3B SUBUNIT 4	coord: 1..80 score: 5.3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006306	DNA methylation
biological_process	GO:0006285	base-excision repair, AP site formation
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0008152	metabolic process
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0009733	response to auxin
biological_process	GO:0006508	proteolysis
biological_process	GO:0000737	DNA catabolic process, endonucleolytic
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009941	chloroplast envelope
molecular_function	GO:0008534	oxidized purine nucleobase lesion DNA N-glycosylase activity
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0046914	transition metal ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004045	aminoacyl-tRNA hydrolase activity
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046983	protein dimerization activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo26907	0.75	Barchart \| Table
Spo06045	0.75	Barchart \| Table
Spo14051	0.73	Barchart \| Table
Spo16392	0.73	Barchart \| Table
Spo07549	0.72	Barchart \| Table
Spo24307	0.71	Barchart \| Table
Spo21243	0.71	Barchart \| Table
Spo18617	0.71	Barchart \| Table
Spo10817	0.70	Barchart \| Table
Spo10820	0.70	Barchart \| Table
Spo08497	0.70	Barchart \| Table
Spo27236	0.69	Barchart \| Table
Spo00538	0.69	Barchart \| Table
Spo10300	0.69	Barchart \| Table
Spo15984	0.69	Barchart \| Table
Spo08712	0.66	Barchart \| Table
Spo06936	0.66	Barchart \| Table
Spo25503	0.65	Barchart \| Table
Spo00451	0.65	Barchart \| Table