Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGGGGATGGTCTCCCGCGAAACCCACCCCATTGACATCCCTCCTGGTATAGCCATTAAGGATATGTATATGGAAGATCTCCTGGTGTAGTCGTGTTGCTTGAATAAAACCCAGGCCCAAAAAGTGAAAAACCTAACCTACTCACTCCATTAGACAAAACCCTAAGGAGTAATGAATTCATTTTGTAATTTAAGTCACACTTCCCCTGCCGCCATCGGCCATCCCCTTTCCATTTTCTCTCTTCTCCAAAAATGTCGTCCACCGCGGCCGCAGCCCGCCCTCTGGTGTCAATCCAGACTGTCGAATCCGACATGTCCACCGACTCCACCCCCACAGCTCATCTTCCCGACGTTATGAAAGCCCCAATCCGCCCTGACGTCGTCAACGAAGTCCATTCCCTCATGTCAAAAAATGCCCGTCAACCCTACGCCGTATCCAAAAAAGCCGGTCACCAGACCTCCGCTGAGTCCTGGGGTACTGGACGTGCAGTCTCCCGTATTCCCCGTGTTCCTGGTGGCGGTACCCACCGTGCTGGACAAGGAGCTTTCGGAAACATGTGTCGTGGTGGTCGCATGTTCGCTCCTACCAAGATCTGGAGGAAATGGCACCGGAAAATCAATGTTAACCAGAAGAGGTACGCCGTCGTATCCGCCATTGCTGCCACTGCGATCCCTGCTCTTGTTCTCGCTCGTGGTCACAAGATCGAGACTGTGCCTGAGCTTCCTCTTGTCGTTTCCGACTCGATTGAGAGCGTCGAGAAGACCTCTGCTGCTTTGAAGGTGTTGAAGTCCATCGGTGCTCTACCCGATGTCGAGAAGGCGAAGGACTCCATTGCTATTCGTGCTGGTAAGGGTAAGATGAGGAACAGGAGGTACATTTCTCGCAAGGGTCCTCTTATCGTTTACGCCACCGAGGGTGCGAAGCTTGTGAAGGCATTCAGGAATCTTCCGGGTGTAGAAATCTGCCATGTTGACAGGCTGAACTTGTTGAAGCTTGCTCCAGGGGGTCATTTGGGTAGGTTTGTGATCTGGACCAAGAGTGCTTTCGAGAAGCTCGATGTAATTTACGGGTCGTTTGATAAGCCTTCTGAGAAGAAGAACAAGTACCTGTTGCCTAGAGCTAAGATGTTGAATGGTGATCTTGCTAGGATTATCAACTCTGATGAGATTCAGTCTATTGTTAGGCCGATTAAGAAGGATTATGTTCGGGCTCCATTGAAGAAGAACCCATTGAAGAATCTCAATGTCATGTTGAAGTTGAACCCCTATGCTAAGACTGCTAAAAGGATGTCTTTGTTGGCTGAGAAACAGAGGGCTGCTTCCAAGGAGAGCAAGCTTCAGAAGAAGAGGAAGGTTCTCTCTAAGGTATATCTTTCTCCTTATTTTTTTTAATATATTATCATCATGGATTGCATTTCCTAGGTTTTTGTTCAGTGCATTTTATTTATTTTTTATATTTTGTTATTGCTTTGTTGAAGTTATTGTTTCTTCTTGTTGGAATTTCATTTTGCTTAGTTATGAGGCTTTATTGGTTGATATCAATTGAAATTATTTGGAGTTTGAACATAAAAAGAACCATATGTGATGATGAAAAACTGATTCTATTGAAATTGGTGATAGATTATCATAATTGGCAGGGCTGATGCTGCTTTGACCACGTTTTTCAAGTAATAAATTGAAAATGGTAAAAGTTTGTTTGATTTTCCCTTAAAAATATGGGTTTGGCCCGCAAATCACGGTGATCAATATTTTACAGTTTATTAAAACTTGATAAACACTTTGAATCGCTGAAGGTTATTTCCGATGATCATGGAAATGTGGCAAATGACTGATGTTTTCAACTTATCAATATAGTTTGAATTTTTGACATGATTGGAAATAGTACATAAATTGAAACATGCTAGTTCAACCCATTAGTTGTAGGCTTATAGGTAGGTGATAAGTTTAGTGAATTAGGATGGAATTGTAAATTGTTATAGTGGTCTACTGGTCTATGATGATAAATGGAAAGGCTTGTTTCTCAAAATATTCGCAGTGGCCGCCTAAGAGCTTTCGTCTGCGCAGACTTGAGAGCTAATGCTGTTCTATCCTTCCTTGGATGTCTGAGACCTCTTTAATTACTAATACTTTGATATTGGTAATAATTGTGCTTGGCAGTCTTCAAGAACAGAATGTTTGTTTCATTGTGCTTGACATAGATTAACAGGGACAAGCAGATATGATAGAATACGTTTTAGAAATTCTGGAATTGCTTTCTTTAAGAGAACTGATTATGTATAGCTGGCGTTGCTGTTAGTCAAAGAACTTGATGGTTCATATTTAGGGAATCCTCAAAAAAAAAGAATTAGTAAATTAGGATGGAATTATAAGTTGTTATAGTAGTGGTCTATGATGATAAATTGAAAAGCTTGTTTCTCAAAACATTCGCAGTGGCCGCCTAAGAGCTTTCGTCTGCGCAGACTTGAGAGCTAATGCTGTTCTATCCTTCCTTGGATGTCTGAGACCTCTTTAATTACTTGCCTAAATGCTTTGATTTTGGTAATAGCTGTGCATGACAGTCTTCAAGCAATGAATATTTGCTTCATTGTGCTTGACTGAGATTAACAGGGAATAACAGAAATTATAGAAAAACATTTTAGAAAATCTTCAATGGCTTTGTTTAGGTGAACTGATTATGTATAGCTGGCATTGCTAGTTAAGAACTTGATTGTTCATTTTTATTGTTGAGGGGATCCTTAAAAAATACACTTTCAAAGCATCAAAAGCTTGGTGCAATAGCTTGTGATTTTGGTCATGTTCTCATGTGCTTGTAGTTTGTTGGGTTTCAAATTTATTCTGTTACCATTGAAATCTTCTCACTCTGTGTAGTATGATATAGTGTTTGATTAGGTTTGCATCCATGTTTATTTATACTGTAGTTATTTTGTTAGTCATTTCTTAGTCTGATTGATCTCGAGTTTGTAATTGGAATTTCTGGTTTCTTGATAAGCTGTTGATGTCATAGTTTTAAGATTTACTCGGTATGACTTTGGTTTGATGATCAAGTATCTGTAAAAAACTTGGTATGGGAATGAACTCGTAGTTAGTTGCTTTTGGTTCGCTGAGTCTATTGTAATCTCTGTATATGTATATGTATTTGAATAGCTAATTTTGCTTGCTGCTTAATCTTGAGCAGGAGGAGCTTGCTGCCATCAAGGCTTCAGGAAGATCGTTCTACAAGACGATGATTTCAGATTCAGACTACACAGAGTTTGAGAACTTCACTAAGTGGCTCGGTGTATCACAGTAAATTTGGCCTTTTAGATAAAAGTTTTGATAGAGAAATTTGATTAAGCTTTTCAATCTGCTGAGTTTAGCGCTTGTTCCTATAGCGTTTGTAGTTGGAAGGCTGTTTAATTGGAACCTTGACAGTGTATTTTTATGATCCGGATCAATGTGGAGTATTATATTACAGAGTATCATTTTTTATTGTCAAAGTTATATTACAGAGGATCAATCAGGAAAGTTTCTTTATGGGATTGGGTAGTTTACCTTGCATATTTGCGTTCATA ATGCGGGGATGGTCTCCCGCGAAACCCACCCCATTGACATCCCTCCTGTCACACTTCCCCTGCCGCCATCGGCCATCCCCTTTCCATTTTCTCTCTTCTCCAAAAATGTCGTCCACCGCGGCCGCAGCCCGCCCTCTGGTGTCAATCCAGACTGTCGAATCCGACATGTCCACCGACTCCACCCCCACAGCTCATCTTCCCGACGTTATGAAAGCCCCAATCCGCCCTGACGTCGTCAACGAAGTCCATTCCCTCATGTCAAAAAATGCCCGTCAACCCTACGCCGTATCCAAAAAAGCCGGTCACCAGACCTCCGCTGAGTCCTGGGGTACTGGACGTGCAGTCTCCCGTATTCCCCGTGTTCCTGGTGGCGGTACCCACCGTGCTGGACAAGGAGCTTTCGGAAACATGTGTCGTGGTGGTCGCATGTTCGCTCCTACCAAGATCTGGAGGAAATGGCACCGGAAAATCAATGTTAACCAGAAGAGGTACGCCGTCGTATCCGCCATTGCTGCCACTGCGATCCCTGCTCTTGTTCTCGCTCGTGGTCACAAGATCGAGACTGTGCCTGAGCTTCCTCTTGTCGTTTCCGACTCGATTGAGAGCGTCGAGAAGACCTCTGCTGCTTTGAAGGTGTTGAAGTCCATCGGTGCTCTACCCGATGTCGAGAAGGCGAAGGACTCCATTGCTATTCGTGCTGGTAAGGGTAAGATGAGGAACAGGAGGTACATTTCTCGCAAGGGTCCTCTTATCGTTTACGCCACCGAGGGTGCGAAGCTTGTGAAGGCATTCAGGAATCTTCCGGGTGTAGAAATCTGCCATGTTGACAGGCTGAACTTGTTGAAGCTTGCTCCAGGGGGTCATTTGGGTAGGTTTGTGATCTGGACCAAGAGTGCTTTCGAGAAGCTCGATGTAATTTACGGGTCGTTTGATAAGCCTTCTGAGAAGAAGAACAAGTACCTGTTGCCTAGAGCTAAGATGTTGAATGGTGATCTTGCTAGGATTATCAACTCTGATGAGATTCAGTCTATTGTTAGGCCGATTAAGAAGGATTATGTTCGGGCTCCATTGAAGAAGAACCCATTGAAGAATCTCAATGTCATGTTGAAGTTGAACCCCTATGCTAAGACTGCTAAAAGGATGTCTTTGTTGGCTGAGAAACAGAGGGCTGCTTCCAAGGAGAGCAAGCTTCAGAAGAAGAGGAAGGTTCTCTCTAAGGAGGAGCTTGCTGCCATCAAGGCTTCAGGAAGATCGTTCTACAAGACGATGATTTCAGATTCAGACTACACAGAGTTTGAGAACTTCACTAAGTGGCTCGGTGTATCACAGTAAATTTGGCCTTTTAGATAAAAGTTTTGATAGAGAAATTTGATTAAGCTTTTCAATCTGCTGAGTTTAGCGCTTGTTCCTATAGCGTTTGTAGTTGGAAGGCTGTTTAATTGGAACCTTGACAGTGTATTTTTATGATCCGGATCAATGTGGAGTATTATATTACAGAGTATCATTTTTTATTGTCAAAGTTATATTACAGAGGATCAATCAGGAAAGTTTCTTTATGGGATTGGGTAGTTTACCTTGCATATTTGCGTTCATA ATGCGGGGATGGTCTCCCGCGAAACCCACCCCATTGACATCCCTCCTGTCACACTTCCCCTGCCGCCATCGGCCATCCCCTTTCCATTTTCTCTCTTCTCCAAAAATGTCGTCCACCGCGGCCGCAGCCCGCCCTCTGGTGTCAATCCAGACTGTCGAATCCGACATGTCCACCGACTCCACCCCCACAGCTCATCTTCCCGACGTTATGAAAGCCCCAATCCGCCCTGACGTCGTCAACGAAGTCCATTCCCTCATGTCAAAAAATGCCCGTCAACCCTACGCCGTATCCAAAAAAGCCGGTCACCAGACCTCCGCTGAGTCCTGGGGTACTGGACGTGCAGTCTCCCGTATTCCCCGTGTTCCTGGTGGCGGTACCCACCGTGCTGGACAAGGAGCTTTCGGAAACATGTGTCGTGGTGGTCGCATGTTCGCTCCTACCAAGATCTGGAGGAAATGGCACCGGAAAATCAATGTTAACCAGAAGAGGTACGCCGTCGTATCCGCCATTGCTGCCACTGCGATCCCTGCTCTTGTTCTCGCTCGTGGTCACAAGATCGAGACTGTGCCTGAGCTTCCTCTTGTCGTTTCCGACTCGATTGAGAGCGTCGAGAAGACCTCTGCTGCTTTGAAGGTGTTGAAGTCCATCGGTGCTCTACCCGATGTCGAGAAGGCGAAGGACTCCATTGCTATTCGTGCTGGTAAGGGTAAGATGAGGAACAGGAGGTACATTTCTCGCAAGGGTCCTCTTATCGTTTACGCCACCGAGGGTGCGAAGCTTGTGAAGGCATTCAGGAATCTTCCGGGTGTAGAAATCTGCCATGTTGACAGGCTGAACTTGTTGAAGCTTGCTCCAGGGGGTCATTTGGGTAGGTTTGTGATCTGGACCAAGAGTGCTTTCGAGAAGCTCGATGTAATTTACGGGTCGTTTGATAAGCCTTCTGAGAAGAAGAACAAGTACCTGTTGCCTAGAGCTAAGATGTTGAATGGTGATCTTGCTAGGATTATCAACTCTGATGAGATTCAGTCTATTGTTAGGCCGATTAAGAAGGATTATGTTCGGGCTCCATTGAAGAAGAACCCATTGAAGAATCTCAATGTCATGTTGAAGTTGAACCCCTATGCTAAGACTGCTAAAAGGATGTCTTTGTTGGCTGAGAAACAGAGGGCTGCTTCCAAGGAGAGCAAGCTTCAGAAGAAGAGGAAGGTTCTCTCTAAGGAGGAGCTTGCTGCCATCAAGGCTTCAGGAAGATCGTTCTACAAGACGATGATTTCAGATTCAGACTACACAGAGTTTGAGAACTTCACTAAGTGGCTCGGTGTATCACAGTAA MRGWSPAKPTPLTSLLSHFPCRHRPSPFHFLSSPKMSSTAAAARPLVSIQTVESDMSTDSTPTAHLPDVMKAPIRPDVVNEVHSLMSKNARQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINVNQKRYAVVSAIAATAIPALVLARGHKIETVPELPLVVSDSIESVEKTSAALKVLKSIGALPDVEKAKDSIAIRAGKGKMRNRRYISRKGPLIVYATEGAKLVKAFRNLPGVEICHVDRLNLLKLAPGGHLGRFVIWTKSAFEKLDVIYGSFDKPSEKKNKYLLPRAKMLNGDLARIINSDEIQSIVRPIKKDYVRAPLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEKQRAASKESKLQKKRKVLSKEELAAIKASGRSFYKTMISDSDYTEFENFTKWLGVSQ Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo17903.1 vs. NCBI nr
Match: gi|902219823|gb|KNA18419.1| (hypothetical protein SOVF_070690 [Spinacia oleracea]) HSP 1 Score: 750.4 bits (1936), Expect = 1.800e-213 Identity = 386/404 (95.54%), Postives = 397/404 (98.27%), Query Frame = 1
BLAST of Spo17903.1 vs. NCBI nr
Match: gi|731374752|ref|XP_010667056.1| (PREDICTED: 60S ribosomal protein L4-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 710.7 bits (1833), Expect = 1.600e-201 Identity = 364/408 (89.22%), Postives = 388/408 (95.10%), Query Frame = 1
BLAST of Spo17903.1 vs. NCBI nr
Match: gi|731335706|ref|XP_010678858.1| (PREDICTED: 60S ribosomal protein L4-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 690.6 bits (1781), Expect = 1.700e-195 Identity = 356/408 (87.25%), Postives = 380/408 (93.14%), Query Frame = 1
BLAST of Spo17903.1 vs. NCBI nr
Match: gi|645234645|ref|XP_008223904.1| (PREDICTED: 60S ribosomal protein L4 [Prunus mume]) HSP 1 Score: 659.8 bits (1701), Expect = 3.300e-186 Identity = 333/408 (81.62%), Postives = 374/408 (91.67%), Query Frame = 1
BLAST of Spo17903.1 vs. NCBI nr
Match: gi|728832444|gb|KHG11887.1| (60S ribosomal L4 [Gossypium arboreum]) HSP 1 Score: 659.4 bits (1700), Expect = 4.300e-186 Identity = 327/404 (80.94%), Postives = 370/404 (91.58%), Query Frame = 1
BLAST of Spo17903.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHJ3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_070690 PE=4 SV=1) HSP 1 Score: 750.4 bits (1936), Expect = 1.300e-213 Identity = 386/404 (95.54%), Postives = 397/404 (98.27%), Query Frame = 1
BLAST of Spo17903.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B3D2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_006450 PE=4 SV=1) HSP 1 Score: 710.7 bits (1833), Expect = 1.100e-201 Identity = 364/408 (89.22%), Postives = 388/408 (95.10%), Query Frame = 1
BLAST of Spo17903.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CAB9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118020 PE=4 SV=1) HSP 1 Score: 690.6 bits (1781), Expect = 1.200e-195 Identity = 356/408 (87.25%), Postives = 380/408 (93.14%), Query Frame = 1
BLAST of Spo17903.1 vs. UniProtKB/TrEMBL
Match: A0A0B0NGW3_GOSAR (60S ribosomal L4 OS=Gossypium arboreum GN=F383_16572 PE=4 SV=1) HSP 1 Score: 659.4 bits (1700), Expect = 3.000e-186 Identity = 327/404 (80.94%), Postives = 370/404 (91.58%), Query Frame = 1
BLAST of Spo17903.1 vs. UniProtKB/TrEMBL
Match: M5VYI1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006524mg PE=4 SV=1) HSP 1 Score: 659.1 bits (1699), Expect = 3.900e-186 Identity = 333/408 (81.62%), Postives = 374/408 (91.67%), Query Frame = 1
BLAST of Spo17903.1 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1) HSP 1 Score: 655.2 bits (1689), Expect = 5.000e-187 Identity = 329/404 (81.44%), Postives = 367/404 (90.84%), Query Frame = 1
BLAST of Spo17903.1 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1) HSP 1 Score: 647.9 bits (1670), Expect = 8.100e-185 Identity = 328/408 (80.39%), Postives = 371/408 (90.93%), Query Frame = 1
BLAST of Spo17903.1 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=2 SV=2) HSP 1 Score: 642.1 bits (1655), Expect = 4.400e-183 Identity = 320/404 (79.21%), Postives = 364/404 (90.10%), Query Frame = 1
BLAST of Spo17903.1 vs. ExPASy Swiss-Prot
Match: RL4_URECA (60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1) HSP 1 Score: 430.6 bits (1106), Expect = 2.000e-119 Identity = 219/367 (59.67%), Postives = 282/367 (76.84%), Query Frame = 1
BLAST of Spo17903.1 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-a PE=2 SV=2) HSP 1 Score: 418.3 bits (1074), Expect = 1.000e-115 Identity = 212/361 (58.73%), Postives = 272/361 (75.35%), Query Frame = 1
BLAST of Spo17903.1 vs. TAIR (Arabidopsis)
Match: AT3G09630.1 (Ribosomal protein L4/L1 family) HSP 1 Score: 655.2 bits (1689), Expect = 2.800e-188 Identity = 329/404 (81.44%), Postives = 367/404 (90.84%), Query Frame = 1
BLAST of Spo17903.1 vs. TAIR (Arabidopsis)
Match: AT5G02870.1 (Ribosomal protein L4/L1 family) HSP 1 Score: 642.1 bits (1655), Expect = 2.500e-184 Identity = 320/404 (79.21%), Postives = 364/404 (90.10%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17903.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo17903.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo17903.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo17903.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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