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Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATTTGATGTTTTGGTTTGGTCAAAGTGCAGGAGAAACATGTCAATGGAGCCAAAATCTCTCTCCTCCTGGGATTACCTAATTCTCCTCTTCGTACGCCCTTCTCTCGCCCTTCTCTTTGTTCTTTTCGTCCTCCTCTTAGGTAATTCCAACAAACTGTGAATCTGATTATGGATTGATTTTGATTAATTGATTGATTTGGATTAATTAATGGATGAATAATCAAATCTTGTAATCTAATGTTGCAGGTTGGTGGATGGCGTGGAAATTGGTGTTAGTTCATGTTCCTTTGGTACAAGAAATCTTTGGGTTGCGTAAAAAAACAACCAAACCCAAGATTCCAGAGCGTCGCTTCTCTCAATTCTACAACTCCCGTCAAACAAGTAAAAGTCAACATTAGGAGACCCTCTTTAAACTGTTTGGTTTGTGTCATTCACTGTTAATTGTTAAATGGTTTTGCATATTTCAAATGAGCTTTCTTTATTAAAGTTATTGTGATTGAGAAGACGCAAAGAGATTGATTTTACTATTATACGGAGTAGCCACCATTATCGAATCCGTGTGTAGAAGCTGCTGGGAGAATGTTATGAATATGAACATAGGAATATGACTGGCTGCTTAGTGCCTTACTGAGGTGATGCTGGAGTTGAGAAATAGGTAAATTCTGCAGTTGGTTACTTTGCATGCTATATTTTTTGCTGAGAATTTTAGCTGCAGTAGATCTGTTTAGCATCTAACCAAAGTTCAAGTTCAGCTTATTCTGTTGGTGTATTCCAACATGGTATTTGCCAGGCAAGTTGTTCTAGCTTCTGGAGTTTAAGAATACAGAAAGGATGGGTTATGCACAACTATACAGAACCTGCCAATCAACAGACTAAGTAGTCGTATGCTTCACACTTTTTTTTATCAGTAGACTTGTTAGTTCGTGTTCATCACTCTGATTTTTTGATGGTGCTGACTGCTGACTGCTGACAGCTGATCGAGTTGCTCCAGTTTTTGTAACTTTTTGTTGTCAAATTAAGTACACAAGATGATGTTTTATTCATAAATTGGAATTCAGTTGTGTTCTCTCAACACAGTTAATAATGTTCAAAGAATTTATTCTTGTAATTATGTAGTGTTGGCCTCCCTCTTTTTTCTGTTTACATTGCACAAATTGACATTGACACCCTCTGCTTGTAACTTGCTTTCCACATTCTAGAAAAGCCATATTATCAAGCAGGCAAGCACTCAGCCATACTAACAAATGCAAGATGCCAAATATTGACTACCACTCTCAAGATTAGATGAATCCGGTCCATGAGAATCATATTCGATGACAAAATGCGTACTAAATAATAACACAAGGCGTGTTTTATTTCTCTTCCCCATAATAAGATTCTTTTCATGAGACATACAAAAACCATATGTATACAACAAAAAAATAGTCCTTGTCTTATTGATTGTATCCTTAATTTTGTGCATGAACTACCATTTCAGATTCGATTCAATACACTACAAGTCTACAACTTACGGAGAACAATTTATGAGACAGCAGGTACACAGCAGCTGTAAATAGATAATAATACTATAGTGCATTCATTAGCCATCTCGGTAACACCAGTGATGCTTTCATCCCAAGCCTACTCAAGAACAAGGCATATAGGATGTGCAGAAGAAATACGAAGAAGCAACAGTTTAACAATAGCTGCCAGAAAAGAAGGTTGTAAGCTTGACTTATACGTAATAGATAAATTGAAAATACAAATGGTTTTTTTTTGTTTGATGTTTGGTTGGATCTAGAAGTCTTACCAGAGTACCAAATATAGCATATATCGTATTCATTGATGGAACTGTATTTAATCCTAATGAGTTGAATATCAAGGTGAGGGTAGCATGTACATTGACGGTGATCTGCAACAAAAGAATAACGCTGTAAGGTGCAATCTTGTGTCCGACCACATGAAATATACAAGTTATATACAAAAGGATTCAATTAATTACCAAAGCAAGTATGTTTTCCCTTATCAAGAACGAGGATGTTAGAACATATCCTAACGCTCCTATTGCTCGAACCTGCATCAAAAAAAAAAAAGAAAAAAAGTTGCCCTCGCTATGCAACAACTGAAAGTAGCTTAACAAAATCTGAAGCAATTGACCTTTTTAGGCAAAGGTGGAAAGAACTATACCAATGTGCACAAGAAGATCG TATTTGATGTTTTGGTTTGGTCAAAGTGCAGGAGAAACATGTCAATGGAGCCAAAATCTCTCTCCTCCTGGGATTACCTAATTCTCCTCTTCGTACGCCCTTCTCTCGCCCTTCTCTTTGTTCTTTTCGTCCTCCTCTTAGGTTGGTGGATGGCGTGGAAATTGGTGTTAGTTCATGTTCCTTTGGTACAAGAAATCTTTGGGTTGCGTAAAAAAACAACCAAACCCAAGATTCCAGAGCGTCGCTTCTCTCAATTCTACAACTCCCGTCAAACAAGTAAAAGTCAACATTAGGAGACCCTCTTTAAACTGTTTGGTTTGTGTCATTCACTGTTAATTGTTAAATGGTTTTGCATATTTCAAATGAGCTTTCTTTATTAAAGTTATTGTGATTGAGAAGACGCAAAGAGATTGATTTTACTATTATACGGAGTAGCCACCATTATCGAATCCGTGTGTAGAAGCTGCTGGGAGAATGTTATGAATATGAACATAGGAATATGACTGGCTGCTTAGTGCCTTACTGAGGTGATGCTGGAGTTGAGAAATAGGCAAGTTGTTCTAGCTTCTGGAGTTTAAGAATACAGAAAGGATGGGTTATGCACAACTATACAGAACCTGCCAATCAACAGACTAAGTAGTCATTCGATTCAATACACTACAAGTCTACAACTTACGGAGAACAATTTATGAGACAGCAGGTACACAGCAGCTGTAAATAGATAATAATACTATAGTGCATTCATTAGCCATCTCGGTAACACCAGTGATGCTTTCATCCCAAGCCTACTCAAGAACAAGGCATATAGGATGTGCAGAAGAAATACGAAGAAGCAACAGTTTAACAATAGCTGCCAGAAAAGAAGGTTGTAAGCTTGACTTATACGTAATAGATAAATTGAAAATACAAATGGTTTTTTTTTGTTTGATGTTTGGTTGGATCTAGAAGTCTTACCAGAGTACCAAATATAGCATATATCGTATTCATTGATGGAACTGTATTTAATCCTAATGAGTTGAATATCAAGGTGAGGGTAGCATGTACATTGACGGTGATCTGCAACAAAAGAATAACGCTGTAAGGTGCAATCTTGTGTCCGACCACATGAAATATACAAGTTATATACAAAAGGATTCAATTAATTACCAAAGCAAGTATGTTTTCCCTTATCAAGAACGAGGATGTTAGAACATATCCTAACGCTCCTATTGCTCGAACCTGCATCAAAAAAAAAAAAGAAAAAAAGTTGCCCTCGCTATGCAACAACTGAAAGTAGCTTAACAAAATCTGAAGCAATTGACCTTTTTAGGCAAAGGTGGAAAGAACTATACCAATGTGCACAAGAAGATCG ATGTCAATGGAGCCAAAATCTCTCTCCTCCTGGGATTACCTAATTCTCCTCTTCGTACGCCCTTCTCTCGCCCTTCTCTTTGTTCTTTTCGTCCTCCTCTTAGGTTGGTGGATGGCGTGGAAATTGGTGTTAGTTCATGTTCCTTTGGTACAAGAAATCTTTGGGTTGCGTAAAAAAACAACCAAACCCAAGATTCCAGAGCGTCGCTTCTCTCAATTCTACAACTCCCGTCAAACAAGTAAAAGTCAACATTAG MSMEPKSLSSWDYLILLFVRPSLALLFVLFVLLLGWWMAWKLVLVHVPLVQEIFGLRKKTTKPKIPERRFSQFYNSRQTSKSQH Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo17908.1 vs. NCBI nr
Match: gi|902223388|gb|KNA19427.1| (hypothetical protein SOVF_061590 [Spinacia oleracea]) HSP 1 Score: 161.4 bits (407), Expect = 6.900e-37 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1
BLAST of Spo17908.1 vs. NCBI nr
Match: gi|870752263|gb|KMS64706.1| (hypothetical protein BVRB_017520 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 109.8 bits (273), Expect = 2.400e-21 Identity = 58/78 (74.36%), Postives = 64/78 (82.05%), Query Frame = 1
BLAST of Spo17908.1 vs. NCBI nr
Match: gi|870869288|gb|KMT20033.1| (hypothetical protein BVRB_1g000520 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 98.6 bits (244), Expect = 5.500e-18 Identity = 53/74 (71.62%), Postives = 58/74 (78.38%), Query Frame = 1
BLAST of Spo17908.1 vs. NCBI nr
Match: gi|1021026437|gb|KZM84224.1| (hypothetical protein DCAR_028229 [Daucus carota subsp. sativus]) HSP 1 Score: 96.7 bits (239), Expect = 2.100e-17 Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 1
BLAST of Spo17908.1 vs. NCBI nr
Match: gi|703147430|ref|XP_010109049.1| (hypothetical protein L484_007383 [Morus notabilis]) HSP 1 Score: 96.3 bits (238), Expect = 2.700e-17 Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 1
BLAST of Spo17908.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKQ1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_061590 PE=4 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 4.800e-37 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1
BLAST of Spo17908.1 vs. UniProtKB/TrEMBL
Match: A0A0J7YM61_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_017520 PE=4 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 1.700e-21 Identity = 58/78 (74.36%), Postives = 64/78 (82.05%), Query Frame = 1
BLAST of Spo17908.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D764_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g000520 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 3.800e-18 Identity = 53/74 (71.62%), Postives = 58/74 (78.38%), Query Frame = 1
BLAST of Spo17908.1 vs. UniProtKB/TrEMBL
Match: W9S1C6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007383 PE=4 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 1.900e-17 Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 1
BLAST of Spo17908.1 vs. UniProtKB/TrEMBL
Match: A0A061FHH4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_035000 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 1.200e-16 Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 1
BLAST of Spo17908.1 vs. TAIR (Arabidopsis)
Match: AT1G36380.1 (unknown protein) HSP 1 Score: 62.8 bits (151), Expect = 1.200e-10 Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17908.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo17908.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo17908.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo17908.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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