Spo17926 (gene) | SpinachBase

Overview


Name	Spo17926
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	ATP synthase subunit b, chloroplastic (ATP synthase F(0) sector subunit b) (ATPase subunit I)
Location	chr2 : 19182520 .. 19183272 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGGCTGAGTCGATGACCTACGTATAAAATAAGAAACATTTTTGGATTTGAATAAAAAAAAACAACTTTGCTGACAATTACTTATATATTTTTTTTTTGTTTGGGTCAGAAGAGTTCTCCGAATATTCTAATCTTGATTAGTGATGGGTTTCCATTTTTTGTTGACTATGAACAGAGAAGAGAGGATAAGTTCATTACATTCAAAAAAGATATGGAAATTTGCCATAAAAAATTGAAGTAATTGAGCGTGAGTGCCAAATGAATTGAAAAATTCACGTTTGGTTCGGGAAGGGATCATGAATGTTTTGAAATGAATGGAAAGATAATCTACTTTCATTAAGTGATTTATTAGATAATTGAAAACAGAGGATCTTGAATACTATTCGAAATTTAGAAGAACTACGCAGAAAGGCCATTGAACAACTGGAAAAAGCCCGGGCTCGCTTAAAGAAAGTCGAAATGGACGCGGATCAGTTTCGAGTGAATGGATATTCTGAAATAGAACGAGAAAAGATGAATTTGATTAATTCAACTTATAAAACTTTAGAACAATTTGAAAATTACAAAAACGAAACCATTCAGTTTGAACAACAAAAAGCGATTAATCAAGTCCTACAGCGGGTTTTCCAACAAGCCTTACAAGGAGCTCTAGGAACTCTGAATAGTTGTTTGAACAATGAGTTACATTTACGGACCATCAATGCTAATATTGGCATGTTTGGTGCGATGAACGAAATAACTGATTAG

mRNA sequence

ATGGCAAAGGCTGAGTCGATGACCTACAGGATCTTGAATACTATTCGAAATTTAGAAGAACTACGCAGAAAGGCCATTGAACAACTGGAAAAAGCCCGGGCTCGCTTAAAGAAAGTCGAAATGGACGCGGATCAGTTTCGAGTGAATGGATATTCTGAAATAGAACGAGAAAAGATGAATTTGATTAATTCAACTTATAAAACTTTAGAACAATTTGAAAATTACAAAAACGAAACCATTCAGTTTGAACAACAAAAAGCGATTAATCAAGTCCTACAGCGGGTTTTCCAACAAGCCTTACAAGGAGCTCTAGGAACTCTGAATAGTTGTTTGAACAATGAGTTACATTTACGGACCATCAATGCTAATATTGGCATGTTTGGTGCGATGAACGAAATAACTGATTAG

Coding sequence (CDS)

ATGGCAAAGGCTGAGTCGATGACCTACAGGATCTTGAATACTATTCGAAATTTAGAAGAACTACGCAGAAAGGCCATTGAACAACTGGAAAAAGCCCGGGCTCGCTTAAAGAAAGTCGAAATGGACGCGGATCAGTTTCGAGTGAATGGATATTCTGAAATAGAACGAGAAAAGATGAATTTGATTAATTCAACTTATAAAACTTTAGAACAATTTGAAAATTACAAAAACGAAACCATTCAGTTTGAACAACAAAAAGCGATTAATCAAGTCCTACAGCGGGTTTTCCAACAAGCCTTACAAGGAGCTCTAGGAACTCTGAATAGTTGTTTGAACAATGAGTTACATTTACGGACCATCAATGCTAATATTGGCATGTTTGGTGCGATGAACGAAATAACTGATTAG

Protein sequence

MAKAESMTYRILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTLEQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGAMNEITD

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo17926.1	Spo17926.1	mRNA

Homology

[Close]

BLAST of Spo17926.1 vs. NCBI nr
Match: gi|11497510|ref|NP_054918.1| (ATP synthase CF0 B subunit [Spinacia oleracea])

HSP 1 Score: 230.3 bits (586), Expect = 2.000e-57
Identity = 123/126 (97.62%), Postives = 123/126 (97.62%), Query Frame = 1

		  
Query: 10  RILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 69
           RILNTIRN EELR KAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL
Sbjct: 59  RILNTIRNSEELRGKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 118

Query: 70  EQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 129
           EQFENYKNETIQFEQQKAINQV QRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA
Sbjct: 119 EQFENYKNETIQFEQQKAINQVRQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 178

Query: 130 MNEITD 136
           MNEITD
Sbjct: 179 MNEITD 184

[Close]

BLAST of Spo17926.1 vs. NCBI nr
Match: gi|836613816|ref|YP_009143625.1| (ATP synthase CF0 B subunit (chloroplast) [Salicornia brachiata])

HSP 1 Score: 222.6 bits (566), Expect = 4.100e-55
Identity = 118/126 (93.65%), Postives = 121/126 (96.03%), Query Frame = 1

		  
Query: 10  RILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 69
           RILNTIRN EELR KAIEQLEKARARLKKVEM+ADQFRVNGYSEIEREKMNLINSTYKTL
Sbjct: 59  RILNTIRNSEELRGKAIEQLEKARARLKKVEMEADQFRVNGYSEIEREKMNLINSTYKTL 118

Query: 70  EQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 129
           EQ ENYKNETI FEQQKAIN+V QRVFQQALQGALGTLNSCLNNELHLRTINAN+GMFGA
Sbjct: 119 EQLENYKNETINFEQQKAINEVRQRVFQQALQGALGTLNSCLNNELHLRTINANLGMFGA 178

Query: 130 MNEITD 136
           MNEITD
Sbjct: 179 MNEITD 184

[Close]

BLAST of Spo17926.1 vs. NCBI nr
Match: gi|932252319|gb|ALG63275.1| (ATP synthase CF0 B subunit (chloroplast) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 221.9 bits (564), Expect = 6.900e-55
Identity = 120/126 (95.24%), Postives = 120/126 (95.24%), Query Frame = 1

		  
Query: 10  RILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 69
           RILNTIRN EELR KAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINST KTL
Sbjct: 60  RILNTIRNSEELRGKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTSKTL 119

Query: 70  EQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 129
           EQ ENYKNETI FEQQKAINQV QRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA
Sbjct: 120 EQLENYKNETILFEQQKAINQVRQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 179

Query: 130 MNEITD 136
           MNEITD
Sbjct: 180 MNEITD 185

[Close]

BLAST of Spo17926.1 vs. NCBI nr
Match: gi|628819094|gb|AHY80527.1| (ATP synthase CF0 subunit I (plastid) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 221.9 bits (564), Expect = 6.900e-55
Identity = 120/126 (95.24%), Postives = 120/126 (95.24%), Query Frame = 1

		  
Query: 10  RILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 69
           RILNTIRN EELR KAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINST KTL
Sbjct: 59  RILNTIRNSEELRGKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTSKTL 118

Query: 70  EQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 129
           EQ ENYKNETI FEQQKAINQV QRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA
Sbjct: 119 EQLENYKNETILFEQQKAINQVRQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 178

Query: 130 MNEITD 136
           MNEITD
Sbjct: 179 MNEITD 184

[Close]

BLAST of Spo17926.1 vs. NCBI nr
Match: gi|1020267070|gb|AMZ03421.1| (ATP synthase subunit b (chloroplast) [Bienertia sinuspersici])

HSP 1 Score: 221.5 bits (563), Expect = 9.100e-55
Identity = 117/126 (92.86%), Postives = 121/126 (96.03%), Query Frame = 1

		  
Query: 10  RILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 69
           RILNTIRN EELR KAIEQLEKARARLKKVEM+ADQFR+NGYSEIEREKMNLINSTYKTL
Sbjct: 59  RILNTIRNSEELRGKAIEQLEKARARLKKVEMEADQFRINGYSEIEREKMNLINSTYKTL 118

Query: 70  EQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 129
           EQ ENYKNETI FEQQKAIN+V Q+VFQQALQGALGTLNSCLNNELHLRTINANIGMFGA
Sbjct: 119 EQLENYKNETINFEQQKAINEVRQQVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 178

Query: 130 MNEITD 136
           MNEITD
Sbjct: 179 MNEITD 184

[Close]

BLAST of Spo17926.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QX53_9CARY (ATP synthase subunit b, chloroplastic OS=Salicornia brachiata GN=atpF PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.800e-55
Identity = 118/126 (93.65%), Postives = 121/126 (96.03%), Query Frame = 1

		  
Query: 10  RILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 69
           RILNTIRN EELR KAIEQLEKARARLKKVEM+ADQFRVNGYSEIEREKMNLINSTYKTL
Sbjct: 59  RILNTIRNSEELRGKAIEQLEKARARLKKVEMEADQFRVNGYSEIEREKMNLINSTYKTL 118

Query: 70  EQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 129
           EQ ENYKNETI FEQQKAIN+V QRVFQQALQGALGTLNSCLNNELHLRTINAN+GMFGA
Sbjct: 119 EQLENYKNETINFEQQKAINEVRQRVFQQALQGALGTLNSCLNNELHLRTINANLGMFGA 178

Query: 130 MNEITD 136
           MNEITD
Sbjct: 179 MNEITD 184

[Close]

BLAST of Spo17926.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QXT4_SALEU (ATP synthase subunit b, chloroplastic OS=Salicornia europaea GN=atpF PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.800e-55
Identity = 118/126 (93.65%), Postives = 121/126 (96.03%), Query Frame = 1

		  
Query: 10  RILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 69
           RILNTIRN EELR KAIEQLEKARARLKKVEM+ADQFRVNGYSEIEREKMNLINSTYKTL
Sbjct: 59  RILNTIRNSEELRGKAIEQLEKARARLKKVEMEADQFRVNGYSEIEREKMNLINSTYKTL 118

Query: 70  EQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 129
           EQ ENYKNETI FEQQKAIN+V QRVFQQALQGALGTLNSCLNNELHLRTINAN+GMFGA
Sbjct: 119 EQLENYKNETINFEQQKAINEVRQRVFQQALQGALGTLNSCLNNELHLRTINANLGMFGA 178

Query: 130 MNEITD 136
           MNEITD
Sbjct: 179 MNEITD 184

[Close]

BLAST of Spo17926.1 vs. UniProtKB/TrEMBL
Match: A0A0N9LT81_BETVU (ATP synthase subunit b, chloroplastic OS=Beta vulgaris subsp. vulgaris GN=atpF PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.800e-55
Identity = 120/126 (95.24%), Postives = 120/126 (95.24%), Query Frame = 1

		  
Query: 10  RILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 69
           RILNTIRN EELR KAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINST KTL
Sbjct: 60  RILNTIRNSEELRGKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTSKTL 119

Query: 70  EQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 129
           EQ ENYKNETI FEQQKAINQV QRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA
Sbjct: 120 EQLENYKNETILFEQQKAINQVRQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 179

Query: 130 MNEITD 136
           MNEITD
Sbjct: 180 MNEITD 185

[Close]

BLAST of Spo17926.1 vs. UniProtKB/TrEMBL
Match: A0A023ZR79_BETVU (ATP synthase CF0 subunit I OS=Beta vulgaris subsp. vulgaris GN=atpF PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.800e-55
Identity = 120/126 (95.24%), Postives = 120/126 (95.24%), Query Frame = 1

		  
Query: 10  RILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 69
           RILNTIRN EELR KAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINST KTL
Sbjct: 59  RILNTIRNSEELRGKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTSKTL 118

Query: 70  EQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 129
           EQ ENYKNETI FEQQKAINQV QRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA
Sbjct: 119 EQLENYKNETILFEQQKAINQVRQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 178

Query: 130 MNEITD 136
           MNEITD
Sbjct: 179 MNEITD 184

[Close]

BLAST of Spo17926.1 vs. UniProtKB/TrEMBL
Match: A0A159ZR88_9CARY (ATP synthase subunit b OS=Bienertia sinuspersici GN=atpF PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.300e-55
Identity = 117/126 (92.86%), Postives = 121/126 (96.03%), Query Frame = 1

		  
Query: 10  RILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 69
           RILNTIRN EELR KAIEQLEKARARLKKVEM+ADQFR+NGYSEIEREKMNLINSTYKTL
Sbjct: 59  RILNTIRNSEELRGKAIEQLEKARARLKKVEMEADQFRINGYSEIEREKMNLINSTYKTL 118

Query: 70  EQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 129
           EQ ENYKNETI FEQQKAIN+V Q+VFQQALQGALGTLNSCLNNELHLRTINANIGMFGA
Sbjct: 119 EQLENYKNETINFEQQKAINEVRQQVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 178

Query: 130 MNEITD 136
           MNEITD
Sbjct: 179 MNEITD 184

[Close]

BLAST of Spo17926.1 vs. ExPASy Swiss-Prot
Match: ATPF_SPIOL (ATP synthase subunit b, chloroplastic OS=Spinacia oleracea GN=atpF PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.200e-59
Identity = 123/126 (97.62%), Postives = 123/126 (97.62%), Query Frame = 1

		  
Query: 10  RILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 69
           RILNTIRN EELR KAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL
Sbjct: 59  RILNTIRNSEELRGKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 118

Query: 70  EQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 129
           EQFENYKNETIQFEQQKAINQV QRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA
Sbjct: 119 EQFENYKNETIQFEQQKAINQVRQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 178

Query: 130 MNEITD 136
           MNEITD
Sbjct: 179 MNEITD 184

[Close]

BLAST of Spo17926.1 vs. ExPASy Swiss-Prot
Match: ATPF_EUCGG (ATP synthase subunit b, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpF PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 7.700e-54
Identity = 112/126 (88.89%), Postives = 119/126 (94.44%), Query Frame = 1

		  
Query: 10  RILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 69
           RILNTIRN EELR  AIEQLEKARARL+KVEM+A+QFRVNGYSEIE+EK+NLINSTYKTL
Sbjct: 59  RILNTIRNSEELRGGAIEQLEKARARLRKVEMEAEQFRVNGYSEIEQEKLNLINSTYKTL 118

Query: 70  EQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 129
           EQ ENYKNETI FEQQ+AINQV QRVFQQALQGALGTLNSCLNNELHLRTI+ANIGMFGA
Sbjct: 119 EQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNNELHLRTISANIGMFGA 178

Query: 130 MNEITD 136
           M EITD
Sbjct: 179 MKEITD 184

[Close]

BLAST of Spo17926.1 vs. ExPASy Swiss-Prot
Match: ATPF_CARPA (ATP synthase subunit b, chloroplastic OS=Carica papaya GN=atpF PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 2.900e-53
Identity = 112/126 (88.89%), Postives = 118/126 (93.65%), Query Frame = 1

		  
Query: 10  RILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 69
           RILNTIRN EELR  AIEQLEKARARL+KVEM+A+QFRVNGYSEIEREK NLINST KTL
Sbjct: 59  RILNTIRNSEELRDGAIEQLEKARARLRKVEMEAEQFRVNGYSEIEREKWNLINSTSKTL 118

Query: 70  EQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 129
           EQ ENYKNETIQFEQQ+AINQV QRVFQQALQGA+GTLNSCL+NELHLRTINANIGMFGA
Sbjct: 119 EQLENYKNETIQFEQQRAINQVRQRVFQQALQGAIGTLNSCLSNELHLRTINANIGMFGA 178

Query: 130 MNEITD 136
           M EITD
Sbjct: 179 MKEITD 184

[Close]

BLAST of Spo17926.1 vs. ExPASy Swiss-Prot
Match: ATPF_POPTR (ATP synthase subunit b, chloroplastic OS=Populus trichocarpa GN=atpF PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.000e-53
Identity = 111/126 (88.10%), Postives = 118/126 (93.65%), Query Frame = 1

		  
Query: 10  RILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 69
           RILNTIRN EELR  AIEQLEKARARL+KVE++ADQFRVNGYSEIEREK+NLINSTYKTL
Sbjct: 59  RILNTIRNSEELRGGAIEQLEKARARLRKVEIEADQFRVNGYSEIEREKLNLINSTYKTL 118

Query: 70  EQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 129
           EQ ENYKNETI FEQQ+AINQV QRVFQQALQGALGTLNSCL NELHLRTI+ANIGMFGA
Sbjct: 119 EQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLTNELHLRTISANIGMFGA 178

Query: 130 MNEITD 136
           M EIT+
Sbjct: 179 MKEITN 184

[Close]

BLAST of Spo17926.1 vs. ExPASy Swiss-Prot
Match: ATPF_POPAL (ATP synthase subunit b, chloroplastic OS=Populus alba GN=atpF PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.000e-53
Identity = 111/126 (88.10%), Postives = 118/126 (93.65%), Query Frame = 1

		  
Query: 10  RILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 69
           RILNTIRN EELR  AIEQLEKARARL+KVE++ADQFRVNGYSEIEREK+NLINSTYKTL
Sbjct: 59  RILNTIRNSEELRGGAIEQLEKARARLRKVEIEADQFRVNGYSEIEREKLNLINSTYKTL 118

Query: 70  EQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 129
           EQ ENYKNETI FEQQ+AINQV QRVFQQALQGALGTLNSCL NELHLRTI+ANIGMFGA
Sbjct: 119 EQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLTNELHLRTISANIGMFGA 178

Query: 130 MNEITD 136
           M EIT+
Sbjct: 179 MKEITN 184

[Close]

BLAST of Spo17926.1 vs. TAIR (Arabidopsis)
Match: ATCG00130.1 (ATPase, F0 complex, subunit B/B', bacterial/chloroplast)

HSP 1 Score: 198.7 bits (504), Expect = 2.200e-51
Identity = 104/126 (82.54%), Postives = 114/126 (90.48%), Query Frame = 1

		  
Query: 10  RILNTIRNLEELRRKAIEQLEKARARLKKVEMDADQFRVNGYSEIEREKMNLINSTYKTL 69
           RILNTIRN EELR  AI+QLE ARARL+ VE +AD+FRVNGYSEIEREK+NLINSTYKTL
Sbjct: 59  RILNTIRNSEELREGAIQQLENARARLRNVETEADKFRVNGYSEIEREKLNLINSTYKTL 118

Query: 70  EQFENYKNETIQFEQQKAINQVLQRVFQQALQGALGTLNSCLNNELHLRTINANIGMFGA 129
           +Q ENYKNETI FEQQ+ INQV +RVFQQALQGA+GTLNSCL+NELHLRTINANIGMFG 
Sbjct: 119 KQLENYKNETILFEQQRTINQVRERVFQQALQGAIGTLNSCLSNELHLRTINANIGMFGT 178

Query: 130 MNEITD 136
           M EITD
Sbjct: 179 MKEITD 184

The following BLAST results are available for this feature:

BLAST of Spo17926.1 vs. NCBI nr
BLAST of Spo17926.1 vs. UniProtKB/TrEMBL
BLAST of Spo17926.1 vs. ExPASy Swiss-Prot
BLAST of Spo17926.1 vs. TAIR (Arabidopsis)

BLAST of Spo17926.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|11497510\|ref\|NP_054918.1\|	2.0e-57	97.6	ATP synthase CF0 B subunit [Sp...	[more]
gi\|836613816\|ref\|YP_009143625.1\|	4.1e-55	93.6	ATP synthase CF0 B subunit (ch...	[more]
gi\|932252319\|gb\|ALG63275.1\|	6.9e-55	95.2	ATP synthase CF0 B subunit (ch...	[more]
gi\|628819094\|gb\|AHY80527.1\|	6.9e-55	95.2	ATP synthase CF0 subunit I (pl...	[more]
gi\|1020267070\|gb\|AMZ03421.1\|	9.1e-55	92.8	ATP synthase subunit b (chloro...	[more]

BLAST of Spo17926.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0G2QX53_9CARY	2.8e-55	93.6	ATP synthase subunit b, chloro...	[more]
A0A0G2QXT4_SALEU	2.8e-55	93.6	ATP synthase subunit b, chloro...	[more]
A0A0N9LT81_BETVU	4.8e-55	95.2	ATP synthase subunit b, chloro...	[more]
A0A023ZR79_BETVU	4.8e-55	95.2	ATP synthase CF0 subunit I OS=...	[more]
A0A159ZR88_9CARY	6.3e-55	92.8	ATP synthase subunit b OS=Bien...	[more]

BLAST of Spo17926.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
ATPF_SPIOL	1.2e-59	97.6	ATP synthase subunit b, chloro...	[more]
ATPF_EUCGG	7.7e-54	88.8	ATP synthase subunit b, chloro...	[more]
ATPF_CARPA	2.9e-53	88.8	ATP synthase subunit b, chloro...	[more]
ATPF_POPTR	5.0e-53	88.1	ATP synthase subunit b, chloro...	[more]
ATPF_POPAL	5.0e-53	88.1	ATP synthase subunit b, chloro...	[more]

BLAST of Spo17926.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
ATCG00130.1	2.2e-51	82.5	ATPase, F0 complex, subunit B/...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002146	ATPase, F0 complex, subunit B/B', bacterial/chloroplast	PFAM	PF00430	ATP-synt_B	coord: 10..107 score: 2.3
None	No IPR available	unknown	Coil	Coil	coord: 11..49 scor
None	No IPR available	PANTHER	PTHR34264	FAMILY NOT NAMED	coord: 10..134 score: 1.0

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0010089	xylem development
biological_process	GO:0009719	response to endogenous stimulus
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0010033	response to organic substance
biological_process	GO:1901700	response to oxygen-containing compound
biological_process	GO:0007033	vacuole organization
biological_process	GO:0036092	phosphatidylinositol-3-phosphate biosynthetic process
biological_process	GO:0006370	7-methylguanosine mRNA capping
biological_process	GO:0006266	DNA ligation
biological_process	GO:0006260	DNA replication
biological_process	GO:0035335	peptidyl-tyrosine dephosphorylation
biological_process	GO:0098507	polynucleotide 5' dephosphorylation
biological_process	GO:0010051	xylem and phloem pattern formation
biological_process	GO:0006771	riboflavin metabolic process
biological_process	GO:0048765	root hair cell differentiation
biological_process	GO:0009733	response to auxin
biological_process	GO:0043087	regulation of GTPase activity
biological_process	GO:0033044	regulation of chromosome organization
biological_process	GO:0045595	regulation of cell differentiation
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0043547	positive regulation of GTPase activity
biological_process	GO:0009944	polarity specification of adaxial/abaxial axis
biological_process	GO:0048519	negative regulation of biological process
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0010014	meristem initiation
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0019497	hexachlorocyclohexane metabolic process
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0048527	lateral root development
biological_process	GO:0032502	developmental process
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0006397	mRNA processing
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0065007	biological regulation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0009987	cellular process
biological_process	GO:0009845	seed germination
biological_process	GO:0018342	protein prenylation
biological_process	GO:0018345	protein palmitoylation
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0006308	DNA catabolic process
biological_process	GO:0010540	basipetal auxin transport
biological_process	GO:0043412	macromolecule modification
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0015976	carbon utilization
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0006730	one-carbon metabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0048439	flower morphogenesis
biological_process	GO:0048449	floral organ formation
biological_process	GO:0006897	endocytosis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0042023	DNA endoreduplication
biological_process	GO:0048589	developmental growth
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:0009395	phospholipid catabolic process
biological_process	GO:0035556	intracellular signal transduction
biological_process	GO:0046339	diacylglycerol metabolic process
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006396	RNA processing
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0019745	pentacyclic triterpenoid biosynthetic process
biological_process	GO:0016126	sterol biosynthetic process
biological_process	GO:0007064	mitotic sister chromatid cohesion
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0006281	DNA repair
biological_process	GO:0006310	DNA recombination
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0051301	cell division
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0043090	amino acid import
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0010090	trichome morphogenesis
biological_process	GO:0009855	determination of bilateral symmetry
biological_process	GO:0071555	cell wall organization
biological_process	GO:0016049	cell growth
biological_process	GO:0007155	cell adhesion
biological_process	GO:0045010	actin nucleation
biological_process	GO:0006570	tyrosine metabolic process
biological_process	GO:0046486	glycerolipid metabolic process
biological_process	GO:0008654	phospholipid biosynthetic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0006508	proteolysis
biological_process	GO:0007018	microtubule-based movement
biological_process	GO:0007020	microtubule nucleation
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0006857	oligopeptide transport
biological_process	GO:0009407	toxin catabolic process
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0051510	regulation of unidimensional cell growth
biological_process	GO:0051302	regulation of cell division
biological_process	GO:0051604	protein maturation
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0048767	root hair elongation
biological_process	GO:0000338	protein deneddylation
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005874	microtubule
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0005871	kinesin complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045298	tubulin complex
cellular_component	GO:0031361	integral component of thylakoid membrane
cellular_component	GO:0055029	nuclear DNA-directed RNA polymerase complex
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0031461	cullin-RING ubiquitin ligase complex
cellular_component	GO:0016459	myosin complex
cellular_component	GO:0030140	trans-Golgi network transport vesicle
cellular_component	GO:0000502	proteasome complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005768	endosome
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0008278	cohesin complex
cellular_component	GO:0005829	cytosol
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005834	heterotrimeric G-protein complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000151	ubiquitin ligase complex
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0019905	syntaxin binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003777	microtubule motor activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0004435	phosphatidylinositol phospholipase C activity
molecular_function	GO:0004871	obsolete signal transducer activity
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008017	microtubule binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0005488	binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0008171	O-methyltransferase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0008173	RNA methyltransferase activity
molecular_function	GO:0004651	polynucleotide 5'-phosphatase activity
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0070696	transmembrane receptor protein serine/threonine kinase binding
molecular_function	GO:0008026	ATP-dependent helicase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008080	N-acetyltransferase activity
molecular_function	GO:0031625	ubiquitin protein ligase binding
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0004089	carbonate dehydratase activity
molecular_function	GO:0003993	acid phosphatase activity
molecular_function	GO:0052826	inositol hexakisphosphate 2-phosphatase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0042578	phosphoric ester hydrolase activity
molecular_function	GO:0016746	transferase activity, transferring acyl groups
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0035091	phosphatidylinositol binding
molecular_function	GO:0005096	GTPase activator activity
molecular_function	GO:0003774	motor activity
molecular_function	GO:0003910	DNA ligase (ATP) activity
molecular_function	GO:0004484	mRNA guanylyltransferase activity
molecular_function	GO:0035673	oligopeptide transmembrane transporter activity
molecular_function	GO:0004725	protein tyrosine phosphatase activity
molecular_function	GO:0008138	protein tyrosine/serine/threonine phosphatase activity
molecular_function	GO:0003779	actin binding
molecular_function	GO:0003881	CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity
molecular_function	GO:0004650	polygalacturonase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo07694	0.75	Barchart \| Table
Spo16895	0.74	Barchart \| Table
Spo25013	0.74	Barchart \| Table
Spo20852	0.73	Barchart \| Table
Spo11190	0.72	Barchart \| Table
Spo17589	0.72	Barchart \| Table
Spo07199	0.72	Barchart \| Table
Spo10550	0.71	Barchart \| Table
Spo22970	0.71	Barchart \| Table
Spo00783	0.71	Barchart \| Table
Spo23434	0.71	Barchart \| Table
Spo17677	0.71	Barchart \| Table
Spo04751	0.70	Barchart \| Table
Spo22439	0.70	Barchart \| Table
Spo10551	0.70	Barchart \| Table
Spo14865	0.70	Barchart \| Table
Spo03622	0.70	Barchart \| Table
Spo03735	0.70	Barchart \| Table
Spo20215	0.70	Barchart \| Table
Spo22859	0.70	Barchart \| Table
Spo19665	0.69	Barchart \| Table
Spo24232	0.69	Barchart \| Table
Spo23733	0.69	Barchart \| Table
Spo13976	0.69	Barchart \| Table
Spo22458	0.69	Barchart \| Table
Spo07415	0.69	Barchart \| Table
Spo24861	0.69	Barchart \| Table
Spo24468	0.69	Barchart \| Table
Spo09842	0.69	Barchart \| Table
Spo17386	0.69	Barchart \| Table
Spo09111	0.68	Barchart \| Table
Spo03002	0.68	Barchart \| Table
Spo15874	0.68	Barchart \| Table
Spo16421	0.68	Barchart \| Table
Spo08408	0.68	Barchart \| Table
Spo18179	0.68	Barchart \| Table
Spo17190	0.68	Barchart \| Table
Spo25504	0.68	Barchart \| Table
Spo17618	0.68	Barchart \| Table
Spo00299	0.68	Barchart \| Table
Spo05192	0.68	Barchart \| Table
Spo06962	0.68	Barchart \| Table
Spo04703	0.68	Barchart \| Table
Spo04281	0.68	Barchart \| Table
Spo00173	0.67	Barchart \| Table
Spo01048	0.67	Barchart \| Table
Spo01216	0.67	Barchart \| Table
Spo01751	0.67	Barchart \| Table
Spo05086	0.67	Barchart \| Table
Spo05948	0.67	Barchart \| Table
Spo07441	0.67	Barchart \| Table
Spo08807	0.67	Barchart \| Table
Spo09958	0.67	Barchart \| Table
Spo10563	0.67	Barchart \| Table
Spo10793	0.67	Barchart \| Table
Spo10966	0.67	Barchart \| Table
Spo11680	0.67	Barchart \| Table
Spo11919	0.67	Barchart \| Table
Spo17123	0.67	Barchart \| Table
Spo17739	0.67	Barchart \| Table
Spo21558	0.67	Barchart \| Table
Spo21628	0.67	Barchart \| Table
Spo22659	0.67	Barchart \| Table
Spo25707	0.67	Barchart \| Table
Spo30027	0.67	Barchart \| Table
Spo08511	0.66	Barchart \| Table
Spo25136	0.66	Barchart \| Table
Spo17154	0.66	Barchart \| Table
Spo11993	0.66	Barchart \| Table
Spo10083	0.66	Barchart \| Table
Spo09260	0.66	Barchart \| Table
Spo08963	0.66	Barchart \| Table
Spo21967	0.66	Barchart \| Table
Spo06041	0.66	Barchart \| Table
Spo25936	0.66	Barchart \| Table
Spo04973	0.66	Barchart \| Table
Spo23355	0.66	Barchart \| Table
Spo02013	0.66	Barchart \| Table
Spo01663	0.66	Barchart \| Table
Spo23833	0.66	Barchart \| Table
Spo24706	0.66	Barchart \| Table
Spo01146	0.66	Barchart \| Table
Spo14661	0.66	Barchart \| Table
Spo14557	0.66	Barchart \| Table
Spo13514	0.66	Barchart \| Table
Spo16687	0.66	Barchart \| Table
Spo16759	0.66	Barchart \| Table
Spo07079	0.66	Barchart \| Table
Spo20693	0.66	Barchart \| Table
Spo21439	0.66	Barchart \| Table
Spo00389	0.66	Barchart \| Table
Spo26706	0.66	Barchart \| Table
Spo08799	0.65	Barchart \| Table
Spo25302	0.65	Barchart \| Table
Spo17940	0.65	Barchart \| Table
Spo12749	0.65	Barchart \| Table
Spo08355	0.65	Barchart \| Table
Spo19755	0.65	Barchart \| Table
Spo01590	0.65	Barchart \| Table
Spo01180	0.65	Barchart \| Table
Spo06358	0.65	Barchart \| Table
Spo03865	0.65	Barchart \| Table
Spo24654	0.65	Barchart \| Table
Spo16732	0.65	Barchart \| Table
Spo15842	0.65	Barchart \| Table
Spo00397	0.65	Barchart \| Table
Spo05385	0.65	Barchart \| Table