Spo17938 (gene) | SpinachBase

Overview


Name	Spo17938
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Mitochondrial import inner membrane translocase subunit tim16
Location	chr3 : 50147763 .. 50152463 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGCTGGAAGAATTATCGCCCAAATTCTAGTGATGGGCTCTGGGATATTAGTTAGGGCTTTTGCTCAAGCTTATCGTCAAGCTCTTTCTAGTATGTTTCTCTATATCTATTTTTATCAATTCATTTGGATTCTTTTCATTTTTAAGGTTTTCAATCAACTAATCCCACTTGTGAAACCTATGTTCATGTGTTTGTAGGGTTTTTTAATTCATTGTGTTCTTTATCCATATTATTGGGGTTTGATGTAAAATTTGTGCCCAAAATTGATGTAATAGTTAGGAGTACAATAGGATATATTGGTTTTCCTGTTTACAGGATTAAAATGATTGGGTAATGGGTGTATTTATTCTTTGATGTTATAATTATATTTCTATTTGATTATGTTTCCTATTACTAGTAGTTTGGAATATGTATTCCATGATTTTAGAATGGATATTAGAAGTCTGAAGTGTTGGCTGTTGCAATCGAAGCGAACTTTCTGTTGGATTTCTTGGCTACTCTCTTCGTGTTTCATTTAAATTAGTTTATTATGAGGAGAAGGGGAGAGGAAAGACTGAGACTTAGATGAGTTAAATCATGTTGATGTTACTATGGAAGGGGTTTGAAGATGAGGGGAAGTGATTTTTTTCAAGGTCTTGATTATATTTTTGGTGTATTGGAAAGTAGTGTTTGTGCATTTCAGTGTATGGCTCCTAAACTCGTTATATCATTCTACCGAATCCCATATATCTTCCTCTGAAAACGTCTGGTATCTCTGGAGGTAATAAAACACAAATAATCATGCCTTCACATTTCCAGTCCTTTTGATATTTCCTCTGAACCGTGGAGCAACTATGTATCTTTTGGGTAAATGAAGTCTTTCGAAACTCTACCAACATTGAGGTTTTTTGGATATTCTCACGCTTAGTTTTCACTCCTTCATGCTCCCCTGCAATAGAAAGGAAATGTTGGTTGCTTTAATATATACCATAACAATGGAGAGCAAAGAAATTTCATATCCAAGGAAAAGTTGTTTGCTTGATTTTTGTCAGCAGCAACTCTTATATTATTTATTTGTTACACTTTTTATAAGGTCCTGCAGAACTACTTTGGAAGCCACTATTTATATAATTATATTCAGCTTCTTACTAGATCTTATGAATTTCCAATTTAGCATTTGTCTTTAGTCTATGTTTTGACTTGTTATGAGAATTTTACTCAGAACAATGGATGTAGACTACGAGTCATGATTCGTATTTTTACTTTCAAGTGAGCAATCTCATAAGAGCGAGTTCTAACCTTTAAAATGGGGTTGCCTAGATCATTTTAGGTCTAGTATCATCTACTTCATTTCTTAGCTGTGGGATTCTACATGAACACTTCTGAAACTTTCCTCCACATTTTATTGATATTTTCACTTGGTGTTTGAGATGGGCTGATAAAGTTTCTCAAACAGGATGTACTCCCTGAAAGTTTTTTTGGAAACAGATGCGTGGGTCTAACATATGGGTTGGGTTTCATTTTCTAGAGAGATGTTGGGTTATGCCTTTTTCTTTTACTATTTTGTTAGAGAGATGCTGGTTTATGCCTTTTTCTTTTACTATTTTGTTAACCATTACTGGCCTTTAAGTCTGGGTTTAGTGTCTGTGAGGGCATTTTGGTGGCAAGTTGACAAGGTTGGTTACGTTGGGCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACGCCTTTTAGTGATCGAAGGGCCTATGTTCAGATCTTTAAATTGCAACTGCTCCATATTCCTCAAATGTTTTCGGATCTGATTACCAGAAGATATATGATGCCGCCATGGCATTTTGGTTTCTTAGGTTGTTTATGTGCTTCACCTGTTTTCTTTGCCAGTTTCTTTTGACATTGGACCGTAGGAGGTTGCATTGAAACCTATGCGACCTCCCTCCTCGTTTCTTTACACTTCACTAGTGGTTTTGGCTTGATCAAGATAAGTCTTTTATGCATAATAGTGGCTTTTTGTAGTGTCAATAAAAATATTTTTCATGTTTTTTGTAAAAAGTTTCACCCAACACCCTCACTGTTGTAAGTTGTAAGTCCTTGTAATTTATAGAGTTGTACCCTTTAAAATCGAATTGGTTAAGATGCTATGTATAGTTCATATAATTAATATAAACCTCAAGCAATCTTAAACTGTAGCGTAGGGCCATAGTAAACTTCTATTTGTTAATTCTTTTCACTAATGTGCAAAATGAATGGAGTGGTCTTTTAAACATGGCTTAAGCTCTTCTTTAAAGAACTGTAGGAAAAAAAGCTCTTCTTCAAAGGAAAATTAGGCACTAACCTTAGGTTACCCATTGGGTGATCAGTTAATCACAATAGGTTTCCTGCGGTTCAATCTGAGGTCTGTGAGCCCTATGGCCTTTCATTTTTACCATATCCTTCTTTGTTTATTTCACATTCTTTATCCCCACCATCAACATATCATCTAATTTCAACTGTTGTCACTTCTATTTCCAAGTAGTCCTTCTGGTGTTCTCCCTTCTTTTACCTCTTGGCATGTTTCATGTGATGGCGTTCCTTAAATCCTTACTAGATTTAACTGCTGTCATTGGATTTTAGTTAGTTCAGTCTTTGTCCCTTTTTATCTTTCTCAGGGACTATGCTTATTTCTTCTAGATTGCTAGGCCTGCTAGCTGTTGCCCTCTTTTGGCCCTTTTGATTTGAGACGCCATTTTTTTCATTCCTTTTTTGAAGCTGTTGGACTTGTAGTCTTGATCTTAATGAAAATTCCCAGTAGGGGTCTAGGCCATTCCCTACACATTTGCCTTTATTTATTTATTTAGGGGTGGGGGGGGAAGAGGGGAATATGCCCATCACCAATTCTCCTAATTTTATTTCTACTTATTTTTATTTTTGGTGCCCATGTTAGCAAACATCCTATAAATAATTGTAATTGATCTTCGATTGATAGCTTGGCCCTTATCACATAGGCACCTCTAGATTTTGTCTCCAAATTTTCTAATTAGTCTAATGCACCATCCTTGCTTTGTTCTTTCATCGGTCTAATATAAAATTGACAGTTTACCTTTCCTACTTTTCTGTCCCTTTTGAAATTCCTAGGGCGTTGATACCACTTTAGGAGCAGATGTTATATGTCAGTGTACAGTGAAGCAACTAGAAAGGATGAAGAGTAGATGTGTGTTGTGTTGTGAACTGGATACTATGAAGTTAACTAGATATGGTTGAGATGTAAGGCGTCTTAAAACTTCCAGTTCCAGAAGAACGAAAAATTATTAATTTAGAAACATTAGACAATAAAAAACTTGATGATTTTATTTGATATTGTGTGTTACAAACTTACAATGCCTTCTACTTCTGCTTCCTATTTTATGTAAGTGTTCAAGTAAGTAAGAGATACTAGCTACATGCCATTCTACCGCTCACTAGATTTTATTGAGGCGTCAGCTGAACTTTATAGTATTACCTGAACACCTTGGACCTTTTTGAACTTATCACAACTTACATTTTCCTGACATTTTATTCCCTCTGTCCCATACTAGTCTATAGACTATACATATACATTTTTCTGGATGTCCCATGTTAATCTTCATTATCTTTGCTATTACTTATATGTCATAGGAAATAGATAATGTGTGCATAATTTATTTTCTTCTTGTTTCGAATGTTAAAACATAAAGGATAAGTATTGGTCAAGGAATGATTAGGGGTTTACTACAGCCCTTTATCCTTTTTTGTTTGATTTTGAAGAAATACGTGGTGTTAAATTATGAATCCAGCCATAGAATCTTGTTAAGCGTGTAAGATTTCATCTCATGGAAGAGTACTATAAATTGCCCATGCAATTTGCAGTTTCAACTTTCAACCATTTTTAACCTTTCCTGCATTGCAGATGCCTCGAAAACTGGTGCAGCTCAGGAAGCAATGAACAATACCGTACGCAGAGCAAGTAAAGCCATCACAGAACAAGAAGCAAGGCAGATTCTTGGCGTTCCTGAGAATGCGGCCTGGGAAGATATTTTGAAAGTACGTTCACATCTCTTGATTTTCTTTTTGGTGCGTGTGTGTTGACTTTCTAGTATGTTTGGTGATTGTGTTCATAATTTTCATTGGTTTATGCAGAAATATGATGTTTTGTTTGAGAGGAATGCCAAGCAAGGGAGCTTCTACATCCAATCGAAGGTCCATAGAGCAAAGGAGTGTCTAGAAGCGATACATCAAAGCAAAGGTCAAGGTTCCGCCAATGGGTAACTTGAACTTGTTGTACATAAAGAGAGTATCATCTTGATAATTAGAATATGAATTTTTAACATAGTGTTTGTTCATTTTTGGTCCTTGGCCGTTTCTGGCCCCACCACCGTCTCCTCTACCTCTATGCAACGAGATATTGTTTGTTTCATAAAAGTTTTTGAAGCATCACATGAGTAGTTACAATTGTGTTAATCATATCTATTCCTCAATGTATGAGTATGAGTAGTTAGCCTGCAACTTGACAATATCTTATAAGCAGATTTTTGGATACTTTGATAAGGCCAAAACCATTCTCGACAGGATAAAAACATTGGTGCCTCGAAACATTTGCAATGAAAGCAGCAAATTTGCAAAGTGCTAACTGTTCTGGTTGCTCTTGTACTTTTGTTTGGTTTTGTTTTTTTTAATGTTGTTTACAAGTGTTCTACCGTTTTCCCACCCA

mRNA sequence

ATGCAGGCTGGAAGAATTATCGCCCAAATTCTAGTGATGGGCTCTGGGATATTAGTTAGGGCTTTTGCTCAAGCTTATCGTCAAGCTCTTTCTAATGCCTCGAAAACTGGTGCAGCTCAGGAAGCAATGAACAATACCGTACGCAGAGCAAGTAAAGCCATCACAGAACAAGAAGCAAGGCAGATTCTTGGCGTTCCTGAGAATGCGGCCTGGGAAGATATTTTGAAAAAATATGATGTTTTGTTTGAGAGGAATGCCAAGCAAGGGAGCTTCTACATCCAATCGAAGGTCCATAGAGCAAAGGAGTGTCTAGAAGCGATACATCAAAGCAAAGGTCAAGGTTCCGCCAATGGGTAACTTGAACTTGTTGTACATAAAGAGAGTATCATCTTGATAATTAGAATATGAATTTTTAACATAGTGTTTGTTCATTTTTGGTCCTTGGCCGTTTCTGGCCCCACCACCGTCTCCTCTACCTCTATGCAACGAGATATTGTTTGTTTCATAAAAGTTTTTGAAGCATCACATGAGTAGTTACAATTGTGTTAATCATATCTATTCCTCAATGTATGAGTATGAGTAGTTAGCCTGCAACTTGACAATATCTTATAAGCAGATTTTTGGATACTTTGATAAGGCCAAAACCATTCTCGACAGGATAAAAACATTGGTGCCTCGAAACATTTGCAATGAAAGCAGCAAATTTGCAAAGTGCTAACTGTTCTGGTTGCTCTTGTACTTTTGTTTGGTTTTGTTTTTTTTAATGTTGTTTACAAGTGTTCTACCGTTTTCCCACCCA

Coding sequence (CDS)

ATGCAGGCTGGAAGAATTATCGCCCAAATTCTAGTGATGGGCTCTGGGATATTAGTTAGGGCTTTTGCTCAAGCTTATCGTCAAGCTCTTTCTAATGCCTCGAAAACTGGTGCAGCTCAGGAAGCAATGAACAATACCGTACGCAGAGCAAGTAAAGCCATCACAGAACAAGAAGCAAGGCAGATTCTTGGCGTTCCTGAGAATGCGGCCTGGGAAGATATTTTGAAAAAATATGATGTTTTGTTTGAGAGGAATGCCAAGCAAGGGAGCTTCTACATCCAATCGAAGGTCCATAGAGCAAAGGAGTGTCTAGAAGCGATACATCAAAGCAAAGGTCAAGGTTCCGCCAATGGGTAA

Protein sequence

MQAGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQILGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo17938.1	Spo17938.1	mRNA

Homology

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BLAST of Spo17938.1 vs. NCBI nr
Match: gi|902190878|gb|KNA11715.1| (hypothetical protein SOVF_132200 [Spinacia oleracea])

HSP 1 Score: 218.8 bits (556), Expect = 5.100e-54
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1

		  
Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI
Sbjct: 2   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG 119
           LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG
Sbjct: 62  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG 117

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BLAST of Spo17938.1 vs. NCBI nr
Match: gi|731339845|ref|XP_010681077.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 195.7 bits (496), Expect = 4.700e-47
Identity = 100/116 (86.21%), Postives = 111/116 (95.69%), Query Frame = 1

		  
Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A RIIAQ+LVMGSG+LVRAFAQAYRQAL+NASKTGAAQEAM NTVR+ASKAITEQEARQI
Sbjct: 2   AARIIAQLLVMGSGLLVRAFAQAYRQALANASKTGAAQEAMQNTVRKASKAITEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG 119
           LGV EN AWEDILKKYD+LFERNAKQGSFY+QSKVHRAKECLEA++Q+KGQG ++G
Sbjct: 62  LGVTENTAWEDILKKYDILFERNAKQGSFYLQSKVHRAKECLEAVYQNKGQGPSSG 117

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BLAST of Spo17938.1 vs. NCBI nr
Match: gi|731322106|ref|XP_010671710.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM16-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 181.4 bits (459), Expect = 9.100e-43
Identity = 93/114 (81.58%), Postives = 106/114 (92.98%), Query Frame = 1

		  
Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A RIIAQ+LV+GSG+L+RA +QAYRQA+ NASKTGAAQEAM NTVRRASKAITEQEARQI
Sbjct: 2   AARIIAQLLVVGSGVLIRAVSQAYRQAIVNASKTGAAQEAMQNTVRRASKAITEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSA 117
           LGVPENAAWE+I  KYDVLFERNAKQGSFY+QSKVHRAKE LE ++Q+KGQG++
Sbjct: 62  LGVPENAAWEEISNKYDVLFERNAKQGSFYLQSKVHRAKEYLEGVYQNKGQGNS 115

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BLAST of Spo17938.1 vs. NCBI nr
Match: gi|902189118|gb|KNA11290.1| (hypothetical protein SOVF_136610 [Spinacia oleracea])

HSP 1 Score: 171.8 bits (434), Expect = 7.200e-40
Identity = 87/110 (79.09%), Postives = 102/110 (92.73%), Query Frame = 1

		  
Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A RI+AQ+LV+GSG+L+RA  QAYRQA+ NASKTGAAQEAM NTVRRAS+A+TEQEARQI
Sbjct: 2   AARILAQLLVVGSGVLIRAVGQAYRQAIVNASKTGAAQEAMQNTVRRASQALTEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKG 113
           LGVPE AAWE+IL+KYDVLFERNAKQGSFY+QSKVHRAKE LE ++++KG
Sbjct: 62  LGVPEKAAWEEILRKYDVLFERNAKQGSFYLQSKVHRAKEHLEEVYRNKG 111

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BLAST of Spo17938.1 vs. NCBI nr
Match: gi|702433133|ref|XP_010069346.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim16 [Eucalyptus grandis])

HSP 1 Score: 169.5 bits (428), Expect = 3.600e-39
Identity = 85/113 (75.22%), Postives = 97/113 (85.84%), Query Frame = 1

		  
Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A +I+A ++VMG GI+ RA  QAYRQAL+NASKTG AQE + NTVRRASKA+TEQEARQI
Sbjct: 2   AAKILANLIVMGGGIMARALVQAYRQALANASKTGVAQETLQNTVRRASKAMTEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGS 116
           LGV E  AWEDILKKYD LFERNAK GSFYIQSKVHRAKECLE+++Q KGQ +
Sbjct: 62  LGVTEETAWEDILKKYDALFERNAKNGSFYIQSKVHRAKECLESVYQGKGQSN 114

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BLAST of Spo17938.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWT5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_132200 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.600e-54
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1

		  
Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI
Sbjct: 2   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG 119
           LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG
Sbjct: 62  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG 117

[Close]

BLAST of Spo17938.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4D8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g139270 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 3.200e-47
Identity = 100/116 (86.21%), Postives = 111/116 (95.69%), Query Frame = 1

		  
Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A RIIAQ+LVMGSG+LVRAFAQAYRQAL+NASKTGAAQEAM NTVR+ASKAITEQEARQI
Sbjct: 2   AARIIAQLLVMGSGLLVRAFAQAYRQALANASKTGAAQEAMQNTVRKASKAITEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSANG 119
           LGV EN AWEDILKKYD+LFERNAKQGSFY+QSKVHRAKECLEA++Q+KGQG ++G
Sbjct: 62  LGVTENTAWEDILKKYDILFERNAKQGSFYLQSKVHRAKECLEAVYQNKGQGPSSG 117

[Close]

BLAST of Spo17938.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWB7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g054070 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 6.300e-43
Identity = 93/114 (81.58%), Postives = 106/114 (92.98%), Query Frame = 1

		  
Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A RIIAQ+LV+GSG+L+RA +QAYRQA+ NASKTGAAQEAM NTVRRASKAITEQEARQI
Sbjct: 2   AARIIAQLLVVGSGVLIRAVSQAYRQAIVNASKTGAAQEAMQNTVRRASKAITEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSA 117
           LGVPENAAWE+I  KYDVLFERNAKQGSFY+QSKVHRAKE LE ++Q+KGQG++
Sbjct: 62  LGVPENAAWEEISNKYDVLFERNAKQGSFYLQSKVHRAKEYLEGVYQNKGQGNS 115

[Close]

BLAST of Spo17938.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVL0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_136610 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.000e-40
Identity = 87/110 (79.09%), Postives = 102/110 (92.73%), Query Frame = 1

		  
Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A RI+AQ+LV+GSG+L+RA  QAYRQA+ NASKTGAAQEAM NTVRRAS+A+TEQEARQI
Sbjct: 2   AARILAQLLVVGSGVLIRAVGQAYRQAIVNASKTGAAQEAMQNTVRRASQALTEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKG 113
           LGVPE AAWE+IL+KYDVLFERNAKQGSFY+QSKVHRAKE LE ++++KG
Sbjct: 62  LGVPEKAAWEEILRKYDVLFERNAKQGSFYLQSKVHRAKEHLEEVYRNKG 111

[Close]

BLAST of Spo17938.1 vs. UniProtKB/TrEMBL
Match: A0A059AV82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00433 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.500e-39
Identity = 85/113 (75.22%), Postives = 97/113 (85.84%), Query Frame = 1

		  
Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A +I+A ++VMG GI+ RA  QAYRQAL+NASKTG AQE + NTVRRASKA+TEQEARQI
Sbjct: 2   AAKILANLIVMGGGIMARALVQAYRQALANASKTGVAQETLQNTVRRASKAMTEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGS 116
           LGV E  AWEDILKKYD LFERNAK GSFYIQSKVHRAKECLE+++Q KGQ +
Sbjct: 62  LGVTEETAWEDILKKYDALFERNAKNGSFYIQSKVHRAKECLESVYQGKGQSN 114

[Close]

BLAST of Spo17938.1 vs. ExPASy Swiss-Prot
Match: TIM16_NEUCR (Mitochondrial import inner membrane translocase subunit tim16 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=un-4 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.600e-10
Identity = 48/113 (42.48%), Postives = 71/113 (62.83%), Query Frame = 1

		  
Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRAS--KAITEQEAR 62
           A R+I Q++V+GS +L RAFA+AY+QA +++    A Q+  N    RAS    +T  EA 
Sbjct: 2   AYRLITQVVVVGSRVLGRAFAEAYKQAAASSQYQRAQQKNGNAATGRASLTSGMTLDEAC 61

Query: 63  QILGVPE-----NAAWEDILKKYDVLFERN--AKQGSFYIQSKVHRAKECLEA 107
           +IL V +      A  E++++++  LF+ N   K GSFY+QSKV RA+E LEA
Sbjct: 62  KILNVNKPADGTAANMEEVMERFKRLFDANDPEKGGSFYLQSKVVRARERLEA 114

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BLAST of Spo17938.1 vs. ExPASy Swiss-Prot
Match: TIM16_DANRE (Mitochondrial import inner membrane translocase subunit tim16 OS=Danio rerio GN=pam16 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.900e-9
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1

		  
Query: 5   RIIAQILVMGSGILVRAFAQAYRQ--ALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 64
           + +AQI+VMG+ ++ RAFA+A RQ  A S A+     Q    +    +   +T QEA+QI
Sbjct: 3   KYLAQIIVMGAQVVGRAFARALRQEFAASQAAAEARGQAGRQSAAASSFTGMTLQEAQQI 62

Query: 65  LGVPENAAWEDILKKYDVLFERNAKQ--GSFYIQSKVHRAKECLE 106
           L +      E+I K Y+ LF+ N K   GSFYIQSKV RAKE L+
Sbjct: 63  LNI-STLTPEEIQKNYEHLFKVNDKAVGGSFYIQSKVVRAKERLD 106

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BLAST of Spo17938.1 vs. ExPASy Swiss-Prot
Match: TIM16_SCHPO (Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pam16 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.600e-9
Identity = 42/111 (37.84%), Postives = 70/111 (63.06%), Query Frame = 1

		  
Query: 1   MQAGRIIAQILVMGSGILVRAFAQAYRQALSNASK--TGAAQEAMNNTVRRASKAITEQE 60
           M   R + + +++GS ++ +AF QAY+Q ++NA++  TG A  + ++T  R  + +T QE
Sbjct: 1   MSLPRAVGRFIIVGSQVMSKAFVQAYKQMIANAAQQSTGQAAASKSSTAVRRGE-MTIQE 60

Query: 61  ARQILGV-PENAAWEDILKKYDVLFERN--AKQGSFYIQSKVHRAKECLEA 107
           A  IL + PE+    ++ K++  +FE N   K GSFY+QSKV RA E L++
Sbjct: 61  AGSILNIKPESLEEGELEKRFQKMFEINDPKKGGSFYLQSKVFRAHEKLKS 110

[Close]

BLAST of Spo17938.1 vs. ExPASy Swiss-Prot
Match: TIM16_YEAST (Mitochondrial import inner membrane translocase subunit TIM16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAM16 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.600e-9
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 1

		  
Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A R   Q+++ G+ +  +AFA+AYRQA S + K GA   +   T +     IT  E+ +I
Sbjct: 2   AHRAFIQVIITGTQVFGKAFAEAYRQAASQSVKQGATNASRRGTGKGEYGGITLDESCKI 61

Query: 63  LGVPENAA---WEDILKKYDVLFERNAKQ--GSFYIQSKVHRAKECLE 106
           L + E+      + I  +++ LFE N K+  GSFY+QSKV+RA E L+
Sbjct: 62  LNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLK 109

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BLAST of Spo17938.1 vs. ExPASy Swiss-Prot
Match: TIM16_XENTR (Mitochondrial import inner membrane translocase subunit tim16 OS=Xenopus tropicalis GN=pam16 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.300e-8
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 1

		  
Query: 5   RIIAQILVMGSGILVRAFAQAYRQ--ALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 64
           + +AQI+VMG  ++ RAF +A RQ  A S A+     +    +    +   I+ QEA+QI
Sbjct: 3   KYLAQIMVMGMQVVGRAFTRALRQEFAASRAAAEARGRAGTESAAVSSLSGISLQEAQQI 62

Query: 65  LGVPENAAWEDILKKYDVLFERNAKQ--GSFYIQSKVHRAKECLE 106
           L V +    E+I K Y+ LF+ N K+  GSFY+QSKV RAKE L+
Sbjct: 63  LNVSKLTP-EEIQKNYEHLFKVNDKEVGGSFYLQSKVVRAKERLD 106

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BLAST of Spo17938.1 vs. TAIR (Arabidopsis)
Match: AT3G59280.1 (Protein Transporter, Pam16)

HSP 1 Score: 158.3 bits (399), Expect = 2.900e-39
Identity = 80/113 (70.80%), Postives = 97/113 (85.84%), Query Frame = 1

		  
Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           AGR++A ++VMGSGI+ RA  QAYRQAL+NASK+G AQEAM N VR+A KAITEQEARQI
Sbjct: 2   AGRLLANLIVMGSGIIGRAVFQAYRQALANASKSGVAQEAMQNGVRQAGKAITEQEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGS 116
           LGV E  +WE+IL+KYD LFE NAK GSFY+QSKVHRAKECLE +++S+G G+
Sbjct: 62  LGVTEKTSWEEILQKYDKLFENNAKAGSFYLQSKVHRAKECLEVVYRSQGNGT 114

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BLAST of Spo17938.1 vs. TAIR (Arabidopsis)
Match: AT5G61880.1 (Protein Transporter, Pam16)

HSP 1 Score: 132.9 bits (333), Expect = 1.300e-31
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = 1

		  
Query: 3   AGRIIAQILVMGSGILVRAFAQAYRQALSNASKTGAAQEAMNNTVRRASKAITEQEARQI 62
           A R++A ++VMGSGI+ RA  QAYRQAL+NASKTG A EA   T++R    I E EARQI
Sbjct: 2   AARVLASVIVMGSGIIARACTQAYRQALANASKTGVAHEA-TQTIKRGL-TIGEAEARQI 61

Query: 63  LGVPENAAWEDILKKYDVLFERNAKQGSFYIQSKVHRAKECLEAIHQSKGQGSA 117
           LGV E ++W++ILKKYD LFERNA+ GSFY+QSKVHRAKECLE  +Q     SA
Sbjct: 62  LGVTEKSSWDEILKKYDTLFERNAQNGSFYLQSKVHRAKECLETAYQKSTTTSA 113

The following BLAST results are available for this feature:

BLAST of Spo17938.1 vs. NCBI nr
BLAST of Spo17938.1 vs. UniProtKB/TrEMBL
BLAST of Spo17938.1 vs. ExPASy Swiss-Prot
BLAST of Spo17938.1 vs. TAIR (Arabidopsis)

BLAST of Spo17938.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902190878\|gb\|KNA11715.1\|	5.1e-54	100.	hypothetical protein SOVF_1322...	[more]
gi\|731339845\|ref\|XP_010681077.1\|	4.7e-47	86.2	PREDICTED: mitochondrial impor...	[more]
gi\|731322106\|ref\|XP_010671710.1\|	9.1e-43	81.5	PREDICTED: mitochondrial impor...	[more]
gi\|902189118\|gb\|KNA11290.1\|	7.2e-40	79.0	hypothetical protein SOVF_1366...	[more]
gi\|702433133\|ref\|XP_010069346.1\|	3.6e-39	75.2	PREDICTED: mitochondrial impor...	[more]

BLAST of Spo17938.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9QWT5_SPIOL	3.6e-54	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C4D8_BETVU	3.2e-47	86.2	Uncharacterized protein OS=Bet...	[more]
A0A0J8CWB7_BETVU	6.3e-43	81.5	Uncharacterized protein OS=Bet...	[more]
A0A0K9QVL0_SPIOL	5.0e-40	79.0	Uncharacterized protein OS=Spi...	[more]
A0A059AV82_EUCGR	2.5e-39	75.2	Uncharacterized protein OS=Euc...	[more]

BLAST of Spo17938.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
TIM16_NEUCR	4.6e-10	42.4	Mitochondrial import inner mem...	[more]
TIM16_DANRE	3.9e-9	43.8	Mitochondrial import inner mem...	[more]
TIM16_SCHPO	6.6e-9	37.8	Mitochondrial import inner mem...	[more]
TIM16_YEAST	6.6e-9	37.9	Mitochondrial import inner mem...	[more]
TIM16_XENTR	4.3e-8	41.9	Mitochondrial import inner mem...	[more]

BLAST of Spo17938.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
AT3G59280.1	2.9e-39	70.8	Protein Transporter, Pam16	[more]
AT5G61880.1	1.3e-31	63.1	Protein Transporter, Pam16	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005341	Mitochondrial import inner membrane translocase subunit Tim16	PANTHER	PTHR12388	MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE	coord: 2..109 score: 1.9
None	No IPR available	PANTHER	PTHR12388:SF2	SUBFAMILY NOT NAMED	coord: 2..109 score: 1.9
None	No IPR available	PFAM	PF03656	Pam16	coord: 5..106 score: 3.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009816	defense response to bacterium, incompatible interaction
biological_process	GO:0006457	protein folding
biological_process	GO:0046685	response to arsenic-containing substance
biological_process	GO:0009408	response to heat
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0007165	signal transduction
biological_process	GO:0009069	serine family amino acid metabolic process
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005744	mitochondrial inner membrane presequence translocase complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0004674	protein serine/threonine kinase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo11573	0.69	Barchart \| Table
Spo12666	0.68	Barchart \| Table
Spo04382	0.67	Barchart \| Table
Spo18231	0.67	Barchart \| Table
Spo15949	0.66	Barchart \| Table
Spo18526	0.66	Barchart \| Table