Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCGAGAATTTCTCTCACTAACCTGCGATCGAATCGAGTCTACTTCATAACGCAAATTCTTACCTGGGATTCTATTCAACATGGCCAAAGCACAAACCTCCAACACAAATTCCTTAACAATTTGTTCAATTTCATTATGCAATTCGAATGTTAAAATCTGCACCAAGTCATACCACAAATGAATGGAATAATATATTTTTAACACGTTTCGGTATCAACGTGATAAGGAACAAAAGAATTTTATAAATATAAATGAAGTGGTAGCCCTAGAACTGGAATATCACAAGTAAAACAAACTCCCATTTCATTTATCCATACTCCAAATATCATCTTCAGTTCTTCACCCCTATCATCTGCAAAATCTCCCCTTTTTTACAACTCAAGAAGAAATGGCAGGAGTTGGACCCATGTCTCAGGATTGGGAACCCGTTGTTATCCGCAAGAAGGCCCCCAACGCCGCCGCCAAGAAGGACGAGAAGGCTGTCAACGCCGCCCGCCGTGCTGGCGCCGAAATCGAAACTGTCCGTAAAGGTTGCTTTTTCTCTTCTGCCCTTTTAATTTCTTGATCAAATATTATGACTGATCTTGTCTAATCGGTTGATCAATTCAGTTTTTCTTTTGCTGTTTTCTTAATTTTCCATTTTTCATGCTAGAATATTGTGATTAGGGTTTTGGAGTTTTATTAAGTTGATTTTGAGATTCTTCGAAATTGATTGTAGCGTTTATCTGGGATGCGTGAATTTAACGCTAGGGTTACTTGTACATGTGTCTATGCTAAACATCTGAACTTGTAGTTCTATATTTTGAATTTAACAAATGATCGTTCAATGGCTTTGTATTTAACAAATAATTTAGGATGAATATTTGCAATGGCTTTGTATTTAACAAATAATTTAGGATGAATATTTGCAATGGCTTTGTATTTTGCTAATTAACGTTAGTAGTGACACTGTTGATTGTTGTTGATGGTAGATGAATTTACTACGCATTTCCGTAATCTTTCGTCTTTTGATGAGTTAAGGTACTCAGGTGTGACTTCGTAGTTTGTATTAGTTGGTCATTGACTCAGTGGTATGTCTGGTTGGAGATTGTTGAAGTTTGTGATAAGTTAAAAGAGAATTTTGTGATTCAGCTAGGTGTTATTTTGCCTTGAGAAGTTTATCAGGATTGATCTGTGCTAAGATGATTTGTTAAAATTAAGTTAATGTGGTGTTGGCTTGTGTTATATTTGAAATTAGACTTGTTTATAGTATGTGTCACACGTACTGCAGAAGGCAAACAGATCCTTTGGCAGTGAATTAACCTTAGTTTCAGATGACTTTGCTAATCTTTCCGTGTTTTGGTTGCAGCGGCTGCTGGGTCGAACAAAGCTGCATCCAGTGGCACATCTCTAAACACCCGAAAGCTGGATGATGAAACTGAGAATCTTGCTCGTGAGTGCCTTCTTTTTTACCTCGAATTGACAATTGCAGACACAGTGAAATTGAACTTGAGGCTTTTGCCGGTGTTGTGTTTTTGCAACAACGGATTGAAAATATGTGGATTGACAGTTTCAATACAGTTGTGCTTCACATTTATTCATCTACAAAACAATACTCCTTCCTCTTAATCGTAGGTCTCTTTTGATTGGGGAAAAAATTTCTTCTCTATTTATGGTTTACTTAGAACACCAGCCCTGAGTTATTTAATAATTCATTGGAGCTTTTACTTGACCTAAGACCTCCAAGAGTAACATGGACAAGTAAATAAGTTTGAGCTTTTTATTTTTGGTTGACATAAATTTGGAATTCGGATTATTATAAAGGGATGGAGGGAGTAATTAGGCATTTGAAGACTGTTATAGGTTAAAAAAATGTTTTGTAACTGATTCATTGTTAGATACCTGTGTCTTAGTAGATGGAGACAAGTATACATCTCTCCTCTCTGTCTTTACCTACTGAATGATCTTCCGGTCATGTTCTTGCTGTTGCTTCATGTTAACATTTAACAGACAGACATAAGAACCCTTTTGGTGAGTCCTGGCCTTTTTTTGGTCTTTACTTACTGAGGGATTACGGATCTGTGATTTTTTAGGTCCAGTGAACAAATAACTTTCAAACTTAGGGGCGTTTGGTTCAAATGGGGGGTAAAGGGAATCAACCCAAGAAAGGGATTGGAAGGGAATAGAAAGGAAAACCCATTGAGATAAGATGTTGTTTGGTGATTTTTTGTCACTCAAATTCCCTTCCTTCTCTCACTAGTGCTCCACCACTCTTCCCCTCTCATGGGTCACCTCTTCGCCCCCTCCACATTGCCGTCAAATCACCGTTGCCTTCGCTGTCACTCCCTTTCTTCCCCGTTGCCGCCCCACCGTCCCTAATTCTCTCCTCCTTCATTGTTTCACCACCACCGTATAAAAGGTTGAATTAGAGGTTTTAATGGTCAAATACGACCATAAAAACTCCAGATCTTGAGTTTTCATGGCCGAATTTGACTCTATAAAGCCATAATTGATGATAAAATAAGGTATTTTCCATTTTTACTCTGATTTTGTTTTTCGAATTTAGGGTGGGTTGGTTTTCAGATTAGTTGTGGTGGTTTGTGGGACTCAGATATGGGTGTTTTTTTTTGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGTTGGGTTGGGCTACTTTTTCGTGGGTGGGGTTGTTTCATGGGTGCTGCTTCTGTTTTGCGGGTGGGGCTGGGGTTTTAGTTGGACGGGGTGGGGTTTCAGGTGGGTCGGCGCGAGGTTTCTTTGATGGGGATGGGTTTTCGGAGAGGTAGGGTAGGGGTTTCGTGAGAGGGGTGGTGGTAGGGCGGCAAGGTGGTGCTTCTGGGGGTGGTGATAGGGCGGCAAGGTGGTGTTTGTGAGGATGGTGGTATGGCGGCAAGGCGGTGATGGGATGTTTTGATGATGATAGCATCATGGTGGGGAGGTTTTGGTTGGGCACTGTTGTTGTTGGGTGCGTTGGTGGTGTAGGAAAGGGAATGCAAATGCCATGGGGGTCGGGAATCAGTTTAGAGGAGTTTGAGGGTAAGAAGGGGGTAAAGGGAATGATTAAAAATGAGGTTAAACAACAACGAAGGGAATCAACCCTTCTCATTCTCTTTCCCTTTCCTGAATACCCCGTACCAAATGCCCCCTTACTATAGTAAGCTCATTAAAGGGATCTCATAGGTAGGAAAAGGACAATTTGTAGGTTCACAACGAAGATACGTTCAGGTTCTGTAGACCTGTACACTTTGTTAGAGCTCTGGTGATTGACATGTCTCAGTGGAAAAAACCATTTTCATAAACTTTTAAAGCAAACTATTCTGACTGCTTTTACCAGTATCAGAAAAAACCCTGTCGGTTGTTTTTGAAGCGTAGTACTTCTAAATCTGTCTGAATCAGTTGATTTACGTTCTGATTATAATTTGTTTCTGGAATTCACAAAATTTATTCTTTGTGAAATTGATTTTGTGTTCAGCTCACAGATCACTCTGTCTCCACTCTCCAGTACATATTTTAAATGCTTGAAACTTTATCTTGATTCAATACAAATCTGGCTTATTTTGCGTAATTAACTAAAAAATTGATCCGGCTTTCACCTAACTGAACTTTGTATCAGATGATCGAGTTCCAACTGAACTAAAGAAGGCCATCATGCAAGGGCGTATGGATAAGAAGCTTACCCAGTCTCAACTTGCTCAGGTTTGTCTCCTTTTTCACAATCATTTTTGTCTTCGTGCAATGTATCGCGGTTATCTTACCAAAGCATTCAAACTGGAGGGAATCTAGACAATATGAAGTCCAATTATTGGATTTACTTTGCTAACTTATGTGCACTGTTTGCTAGTTTACTACGGAGTAGTTGCAACATTTCCTAAAGCGGAGTTTGTTGGGGTGATGGTTACTTGTAGAAATATTTCCTAAACAGAGTTTGTTGGGATGATGTTTGACTCCCCACTTCCATACTTGCAGTATTTGGTTGATATTGTGCTTAAAAACCTACGTGCATTGTTGTTGCAGCTGATCAATGAGAAGCCACAAATCATACAGGAATATGAATCAGGAAAGGCCATTCCAAACCAGCAGATCATCGGAAAACTGGAGCGTACTCTTGGTGTGAAACTGCGCGGAAAGAAGTAGAGACTGAAGAACCCCAAATTTCTGAAATCTTGATTTAAAACTGTTGGGGTTTAATATGTGATGGAGTTTGAAACTGGTGTAAAACACTTCCCAGCTGTTGGCTTTTGTATAAATGTGTGGGTTGGACTAAATCTACGGATATGAATAACACTCTGAATGCATGATCTTTAGTTCCATGCCACAATATGTTTGGTTGAATGTTGTTATGAAGTCATTAAACTTCCCTTCACCAATTAATATCCACAGCCTCCAAATTTACGTATCTTCGTGGGTGTTCTTTCCTGTATTGCTGTTTAGATTTGCCGGATAGATTGAAGATGGTGGTGATGGTAATGCCCGTGTGGCAATTCAAGGTGAAAAGACAGTGAGACAACGAAATAGTGTTCATTTCTGATGGAGCCAAAGATTCATTTGTTCTTTTGGTTGTGGGATGAAATGACTAAATCAAAATTGCTCTTCCCTTCCTTTCCATGAAGTAGAAGATGGTCGTCCCGTTGTTGTCCCGTTATCGCTTTTGGGTCAATTGGAAACAACCTCTCTGCAATTGCAGGAGTAAGGTTGCGTACGTCCGACCTAGGGATGGCAATGTGTCGGATCTGGATCGGGTTCGACAGGATCCAGACCCAGACCCGCTTTTTAAGAGGTGGATCCAGATCCGACCCAGTTCCGCTGGGTCCAAAAAAAATCAGATCCAGACCCAGATCCACTGGGTCTAATGGGTCTAGGGTCGGATCTGGATCCTAAATGGGTCTAAGCGTATTTCTTTTCCAAAAAAAACTGTCCCTCATTTTTCTTATATTACATAATTTTTTCGCCCATTTTTTGTATGTAAACGTAACGTTGTTTTAATAAAACCACTAAATATGGAATATTCGTTAATTTTGTTTAGGAAAAAAATCATATTAGCCCT TCGAGAATTTCTCTCACTAACCTGCGATCGAATCGAGTCTACTTCATAACGCAAATTCTTACCTGGGATTCTATTCAACATGGCCAAAGCACAAACCTCCAACACAAATTCCTTAACAATTTGTTCAATTTCATTATGCAATTCGAATGTTAAAATCTGCACCAAGTCATACCACAAATGAATGGAATAATATATTTTTAACACGTTTCGGTATCAACGTGATAAGGAACAAAAGAATTTTATAAATATAAATGAAGTGGTAGCCCTAGAACTGGAATATCACAAGTAAAACAAACTCCCATTTCATTTATCCATACTCCAAATATCATCTTCAGTTCTTCACCCCTATCATCTGCAAAATCTCCCCTTTTTTACAACTCAAGAAGAAATGGCAGGAGTTGGACCCATGTCTCAGGATTGGGAACCCGTTGTTATCCGCAAGAAGGCCCCCAACGCCGCCGCCAAGAAGGACGAGAAGGCTGTCAACGCCGCCCGCCGTGCTGGCGCCGAAATCGAAACTGTCCGTAAAGCGGCTGCTGGGTCGAACAAAGCTGCATCCAGTGGCACATCTCTAAACACCCGAAAGCTGGATGATGAAACTGAGAATCTTGCTCATGATCGAGTTCCAACTGAACTAAAGAAGGCCATCATGCAAGGGCGTATGGATAAGAAGCTTACCCAGTCTCAACTTGCTCAGCTGATCAATGAGAAGCCACAAATCATACAGGAATATGAATCAGGAAAGGCCATTCCAAACCAGCAGATCATCGGAAAACTGGAGCGTACTCTTGGTGTGAAACTGCGCGGAAAGAAGTAGAGACTGAAGAACCCCAAATTTCTGAAATCTTGATTTAAAACTGTTGGGGTTTAATATGTGATGGAGTTTGAAACTGGTGTAAAACACTTCCCAGCTGTTGGCTTTTGTATAAATGTGTGGGTTGGACTAAATCTACGGATATGAATAACACTCTGAATGCATGATCTTTAGTTCCATGCCACAATATGTTTGGTTGAATGTTGTTATGAAGTCATTAAACTTCCCTTCACCAATTAATATCCACAGCCTCCAAATTTACGTATCTTCGTGGGTGTTCTTTCCTGTATTGCTGTTTAGATTTGCCGGATAGATTGAAGATGGTGGTGATGGTAATGCCCGTGTGGCAATTCAAGGTGAAAAGACAGTGAGACAACGAAATAGTGTTCATTTCTGATGGAGCCAAAGATTCATTTGTTCTTTTGGTTGTGGGATGAAATGACTAAATCAAAATTGCTCTTCCCTTCCTTTCCATGAAGTAGAAGATGGTCGTCCCGTTGTTGTCCCGTTATCGCTTTTGGGTCAATTGGAAACAACCTCTCTGCAATTGCAGGAGTAAGGTTGCGTACGTCCGACCTAGGGATGGCAATGTGTCGGATCTGGATCGGGTTCGACAGGATCCAGACCCAGACCCGCTTTTTAAGAGGTGGATCCAGATCCGACCCAGTTCCGCTGGGTCCAAAAAAAATCAGATCCAGACCCAGATCCACTGGGTCTAATGGGTCTAGGGTCGGATCTGGATCCTAAATGGGTCTAAGCGTATTTCTTTTCCAAAAAAAACTGTCCCTCATTTTTCTTATATTACATAATTTTTTCGCCCATTTTTTGTATGTAAACGTAACGTTGTTTTAATAAAACCACTAAATATGGAATATTCGTTAATTTTGTTTAGGAAAAAAATCATATTAGCCCT ATGGCAGGAGTTGGACCCATGTCTCAGGATTGGGAACCCGTTGTTATCCGCAAGAAGGCCCCCAACGCCGCCGCCAAGAAGGACGAGAAGGCTGTCAACGCCGCCCGCCGTGCTGGCGCCGAAATCGAAACTGTCCGTAAAGCGGCTGCTGGGTCGAACAAAGCTGCATCCAGTGGCACATCTCTAAACACCCGAAAGCTGGATGATGAAACTGAGAATCTTGCTCATGATCGAGTTCCAACTGAACTAAAGAAGGCCATCATGCAAGGGCGTATGGATAAGAAGCTTACCCAGTCTCAACTTGCTCAGCTGATCAATGAGAAGCCACAAATCATACAGGAATATGAATCAGGAAAGGCCATTCCAAACCAGCAGATCATCGGAAAACTGGAGCGTACTCTTGGTGTGAAACTGCGCGGAAAGAAGTAG MAGVGPMSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVRKAAAGSNKAASSGTSLNTRKLDDETENLAHDRVPTELKKAIMQGRMDKKLTQSQLAQLINEKPQIIQEYESGKAIPNQQIIGKLERTLGVKLRGKK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo17950.1 vs. NCBI nr
Match: gi|902232182|gb|KNA22526.1| (hypothetical protein SOVF_033080 [Spinacia oleracea]) HSP 1 Score: 263.1 bits (671), Expect = 2.900e-67 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1
BLAST of Spo17950.1 vs. NCBI nr
Match: gi|731365470|ref|XP_010694544.1| (PREDICTED: multiprotein-bridging factor 1b [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 254.2 bits (648), Expect = 1.300e-64 Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 1
BLAST of Spo17950.1 vs. NCBI nr
Match: gi|702365699|ref|XP_010060705.1| (PREDICTED: multiprotein-bridging factor 1b [Eucalyptus grandis]) HSP 1 Score: 245.0 bits (624), Expect = 8.100e-62 Identity = 132/142 (92.96%), Postives = 136/142 (95.77%), Query Frame = 1
BLAST of Spo17950.1 vs. NCBI nr
Match: gi|743901517|ref|XP_011044080.1| (PREDICTED: multiprotein-bridging factor 1b-like [Populus euphratica]) HSP 1 Score: 242.3 bits (617), Expect = 5.200e-61 Identity = 129/142 (90.85%), Postives = 137/142 (96.48%), Query Frame = 1
BLAST of Spo17950.1 vs. NCBI nr
Match: gi|566153776|ref|XP_006370143.1| (putative transcriptional coactivator family protein [Populus trichocarpa]) HSP 1 Score: 241.9 bits (616), Expect = 6.800e-61 Identity = 128/142 (90.14%), Postives = 137/142 (96.48%), Query Frame = 1
BLAST of Spo17950.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSK2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_033080 PE=4 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 2.000e-67 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1
BLAST of Spo17950.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BBL3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g093940 PE=4 SV=1) HSP 1 Score: 254.2 bits (648), Expect = 9.300e-65 Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 1
BLAST of Spo17950.1 vs. UniProtKB/TrEMBL
Match: A0A059BND1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01243 PE=4 SV=1) HSP 1 Score: 245.0 bits (624), Expect = 5.600e-62 Identity = 132/142 (92.96%), Postives = 136/142 (95.77%), Query Frame = 1
BLAST of Spo17950.1 vs. UniProtKB/TrEMBL
Match: A9PIK1_POPTR (Putative transcriptional coactivator family protein OS=Populus trichocarpa GN=POPTR_0001s40090g PE=2 SV=1) HSP 1 Score: 241.9 bits (616), Expect = 4.800e-61 Identity = 128/142 (90.14%), Postives = 137/142 (96.48%), Query Frame = 1
BLAST of Spo17950.1 vs. UniProtKB/TrEMBL
Match: A9PDI3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s11080g PE=2 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 4.000e-60 Identity = 127/138 (92.03%), Postives = 133/138 (96.38%), Query Frame = 1
BLAST of Spo17950.1 vs. ExPASy Swiss-Prot
Match: MBF1B_ARATH (Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1) HSP 1 Score: 229.9 bits (585), Expect = 1.700e-59 Identity = 120/142 (84.51%), Postives = 133/142 (93.66%), Query Frame = 1
BLAST of Spo17950.1 vs. ExPASy Swiss-Prot
Match: MBF1A_ARATH (Multiprotein-bridging factor 1a OS=Arabidopsis thaliana GN=MBF1A PE=2 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 9.200e-58 Identity = 117/142 (82.39%), Postives = 130/142 (91.55%), Query Frame = 1
BLAST of Spo17950.1 vs. ExPASy Swiss-Prot
Match: EDF1_CHICK (Endothelial differentiation-related factor 1 homolog OS=Gallus gallus GN=EDF1 PE=2 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 1.300e-30 Identity = 76/133 (57.14%), Postives = 96/133 (72.18%), Query Frame = 1
BLAST of Spo17950.1 vs. ExPASy Swiss-Prot
Match: EDF1_XENLA (Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis GN=edf1 PE=2 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 1.300e-30 Identity = 75/133 (56.39%), Postives = 95/133 (71.43%), Query Frame = 1
BLAST of Spo17950.1 vs. ExPASy Swiss-Prot
Match: EDF1_HUMAN (Endothelial differentiation-related factor 1 OS=Homo sapiens GN=EDF1 PE=1 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 2.100e-30 Identity = 76/133 (57.14%), Postives = 95/133 (71.43%), Query Frame = 1
BLAST of Spo17950.1 vs. TAIR (Arabidopsis)
Match: AT3G58680.1 (multiprotein bridging factor 1B) HSP 1 Score: 229.9 bits (585), Expect = 9.500e-61 Identity = 120/142 (84.51%), Postives = 133/142 (93.66%), Query Frame = 1
BLAST of Spo17950.1 vs. TAIR (Arabidopsis)
Match: AT2G42680.1 (multiprotein bridging factor 1A) HSP 1 Score: 224.2 bits (570), Expect = 5.200e-59 Identity = 117/142 (82.39%), Postives = 130/142 (91.55%), Query Frame = 1
BLAST of Spo17950.1 vs. TAIR (Arabidopsis)
Match: AT3G24500.1 (multiprotein bridging factor 1C) HSP 1 Score: 131.3 bits (329), Expect = 4.600e-31 Identity = 70/139 (50.36%), Postives = 100/139 (71.94%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17950.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo17950.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo17950.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo17950.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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