Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTAATTTCATACACATATTTCATAAAGCAAATAAGAAATATATAATTAATATCCTTAATTTTCGAAAAATGGGAGGTTTAAAACGTAAGCTAGAAGGTGAGATAGAGATAAGAGTTGCTGGAGGTGATGCCTTCCATGACATATTCCAAGAGAAGCCTCATCACATCGCCAACATCCATCCTGAGTTAGTGCATGACTGTGAGTTGCATGATGGTGCTTTTGGTAAACCTGGCTCCAAAATTTGCTGGAAATATAAGCTAGGTAACTAATTAATGTTCCAAACCACTTTTTATTTATCTCATATGAGATCTTGTCAAATTAAAGATATTAATAATAACTGTCAAAAAAATACAATGACAAACATGATGAAGAAGTAAAATATATATGCCATGTTTGGTTAGGACTTAGGAGTTGTTAGTTGTTAGCTGATAGCTGGTTTGACTAGCTGTTAGCGGTTAGCTGTTTGCATTAGATGTTTTGACTAGCTGGTTGCATCAGCTGTTTGTGTAAAAGTGTTTGGTAAATTAGCTGATAGATGTTAGCTGTTTAATATGTAAAATGACAATTAAGGACATTGTTTGAATGAATATTGAATAACGTTATTGTTATAATAATGATATATATGTTGACATGTTGTAGATGGAAAGAGTCAATCTGGAAAGCAAATACTTGATGTGGTAGACGAGAAGAACAAAATAATAAAATTCAGAATGTTGGAAGGAGATTTGATGGAGGATTATAACACCTTTGTTCTAACATATCAAGTGATACCTAAAGGTGAGCATAAAAGCCTGGTAACTTGGACATTTGAATACGAGAAGAAGCATCCTGGCGTTCCTGAGCCTTCTTCTTTGATGGACGAATTGCTCCGACTGGCCGAAAAAATTGATGATCATCACCACGCCGGCCAACCCAAATAGACTAATTAATTAAGTACTAAGCCATCTGTTATCATCGATCTTATGCTTTGTTTTTTACTACATAATATGATCGTATGTGTTTATTACTGCAAAATAAGGCATGTTTGCTGTTTGCACATGCCCCATAAGCATCTATGTATGTGAAACAATCGACTGGATCAACATGGTCTATGTATCATGTATGTTGGATTGTTGGGGTGCTATATATGTATAATGTATTTTTTTTTGGGTTCTACTACGAGGAGTTCCCACCGCCTTCGGTGAGTGGACTAATCTCCCGTGGATGTATAATGTATTATATATATCATAATATGTTTTTGTTGATTTAATGCTTTCTTAAAGAATAATGTACATTATTGTGCCTTTTTCTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTACCGACACTAGCATTAGCTAAAATAGTCCGTATTTATTATGCAAAATGACGTTTTCACCCTATCACCTCACCTCCTAAACCCCCTCCCCGCCCTCTCTAAATTTGCAGCAGCC CTAATTTCATACACATATTTCATAAAGCAAATAAGAAATATATAATTAATATCCTTAATTTTCGAAAAATGGGAGGTTTAAAACGTAAGCTAGAAGGTGAGATAGAGATAAGAGTTGCTGGAGGTGATGCCTTCCATGACATATTCCAAGAGAAGCCTCATCACATCGCCAACATCCATCCTGAGTTAGTGCATGACTGTGAGTTGCATGATGGTGCTTTTGGTAAACCTGGCTCCAAAATTTGCTGGAAATATAAGCTAGATGGAAAGAGTCAATCTGGAAAGCAAATACTTGATGTGGTAGACGAGAAGAACAAAATAATAAAATTCAGAATGTTGGAAGGAGATTTGATGGAGGATTATAACACCTTTGTTCTAACATATCAAGTGATACCTAAAGGTGAGCATAAAAGCCTGGTAACTTGGACATTTGAATACGAGAAGAAGCATCCTGGCGTTCCTGAGCCTTCTTCTTTGATGGACGAATTGCTCCGACTGGCCGAAAAAATTGATGATCATCACCACGCCGGCCAACCCAAATAGACTAATTAATTAAGTACTAAGCCATCTGTTATCATCGATCTTATGCTTTGTTTTTTACTACATAATATGATCGTATGTGTTTATTACTGCAAAATAAGGCATGTTTGCTGTTTGCACATGCCCCATAAGCATCTATGTATGTGAAACAATCGACTGGATCAACATGGTCTATGTATCATGTATGTTGGATTGTTGGGGTGCTATATATGTATAATGTATTTTTTTTTGGGTTCTACTACGAGGAGTTCCCACCGCCTTCGGTGAGTGGACTAATCTCCCGTGGATGTATAATGTATTATATATATCATAATATGTTTTTGTTGATTTAATGCTTTCTTAAAGAATAATGTACATTATTGTGCCTTTTTCTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTACCGACACTAGCATTAGCTAAAATAGTCCGTATTTATTATGCAAAATGACGTTTTCACCCTATCACCTCACCTCCTAAACCCCCTCCCCGCCCTCTCTAAATTTGCAGCAGCC ATGGGAGGTTTAAAACGTAAGCTAGAAGGTGAGATAGAGATAAGAGTTGCTGGAGGTGATGCCTTCCATGACATATTCCAAGAGAAGCCTCATCACATCGCCAACATCCATCCTGAGTTAGTGCATGACTGTGAGTTGCATGATGGTGCTTTTGGTAAACCTGGCTCCAAAATTTGCTGGAAATATAAGCTAGATGGAAAGAGTCAATCTGGAAAGCAAATACTTGATGTGGTAGACGAGAAGAACAAAATAATAAAATTCAGAATGTTGGAAGGAGATTTGATGGAGGATTATAACACCTTTGTTCTAACATATCAAGTGATACCTAAAGGTGAGCATAAAAGCCTGGTAACTTGGACATTTGAATACGAGAAGAAGCATCCTGGCGTTCCTGAGCCTTCTTCTTTGATGGACGAATTGCTCCGACTGGCCGAAAAAATTGATGATCATCACCACGCCGGCCAACCCAAATAG MGGLKRKLEGEIEIRVAGGDAFHDIFQEKPHHIANIHPELVHDCELHDGAFGKPGSKICWKYKLDGKSQSGKQILDVVDEKNKIIKFRMLEGDLMEDYNTFVLTYQVIPKGEHKSLVTWTFEYEKKHPGVPEPSSLMDELLRLAEKIDDHHHAGQPK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo17956.1 vs. NCBI nr
Match: gi|902238644|gb|KNA25270.1| (hypothetical protein SOVF_008000 [Spinacia oleracea]) HSP 1 Score: 334.0 bits (855), Expect = 1.500e-88 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1
BLAST of Spo17956.1 vs. NCBI nr
Match: gi|731345803|ref|XP_010684109.1| (PREDICTED: MLP-like protein 43 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 266.2 bits (679), Expect = 3.700e-68 Identity = 121/152 (79.61%), Postives = 135/152 (88.82%), Query Frame = 1
BLAST of Spo17956.1 vs. NCBI nr
Match: gi|870854534|gb|KMT06303.1| (hypothetical protein BVRB_7g162260 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 265.8 bits (678), Expect = 4.900e-68 Identity = 121/152 (79.61%), Postives = 135/152 (88.82%), Query Frame = 1
BLAST of Spo17956.1 vs. NCBI nr
Match: gi|902158107|gb|KNA06194.1| (hypothetical protein SOVF_183330 [Spinacia oleracea]) HSP 1 Score: 264.6 bits (675), Expect = 1.100e-67 Identity = 119/153 (77.78%), Postives = 134/153 (87.58%), Query Frame = 1
BLAST of Spo17956.1 vs. NCBI nr
Match: gi|731345888|ref|XP_010684158.1| (PREDICTED: MLP-like protein 43 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 233.8 bits (595), Expect = 2.100e-58 Identity = 111/150 (74.00%), Postives = 125/150 (83.33%), Query Frame = 1
BLAST of Spo17956.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0I6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_008000 PE=4 SV=1) HSP 1 Score: 334.0 bits (855), Expect = 1.000e-88 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1
BLAST of Spo17956.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BYF4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g162250 PE=4 SV=1) HSP 1 Score: 266.2 bits (679), Expect = 2.600e-68 Identity = 121/152 (79.61%), Postives = 135/152 (88.82%), Query Frame = 1
BLAST of Spo17956.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C2F2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g162260 PE=4 SV=1) HSP 1 Score: 265.8 bits (678), Expect = 3.400e-68 Identity = 121/152 (79.61%), Postives = 135/152 (88.82%), Query Frame = 1
BLAST of Spo17956.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QG00_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_183330 PE=4 SV=1) HSP 1 Score: 264.6 bits (675), Expect = 7.600e-68 Identity = 119/153 (77.78%), Postives = 134/153 (87.58%), Query Frame = 1
BLAST of Spo17956.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R979_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_099260 PE=4 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 2.100e-41 Identity = 77/152 (50.66%), Postives = 105/152 (69.08%), Query Frame = 1
BLAST of Spo17956.1 vs. ExPASy Swiss-Prot
Match: MLP43_ARATH (MLP-like protein 43 OS=Arabidopsis thaliana GN=MLP43 PE=1 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 3.600e-31 Identity = 64/145 (44.14%), Postives = 92/145 (63.45%), Query Frame = 1
BLAST of Spo17956.1 vs. ExPASy Swiss-Prot
Match: MLP34_ARATH (MLP-like protein 34 OS=Arabidopsis thaliana GN=MLP34 PE=2 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 3.800e-28 Identity = 59/144 (40.97%), Postives = 94/144 (65.28%), Query Frame = 1
BLAST of Spo17956.1 vs. ExPASy Swiss-Prot
Match: MLP31_ARATH (MLP-like protein 31 OS=Arabidopsis thaliana GN=MLP31 PE=2 SV=2) HSP 1 Score: 124.4 bits (311), Expect = 1.100e-27 Identity = 58/145 (40.00%), Postives = 94/145 (64.83%), Query Frame = 1
BLAST of Spo17956.1 vs. ExPASy Swiss-Prot
Match: MLP28_ARATH (MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28 PE=1 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 3.200e-27 Identity = 58/145 (40.00%), Postives = 92/145 (63.45%), Query Frame = 1
BLAST of Spo17956.1 vs. ExPASy Swiss-Prot
Match: KIRO_ACTDE (Kirola OS=Actinidia deliciosa PE=1 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 2.300e-25 Identity = 58/148 (39.19%), Postives = 96/148 (64.86%), Query Frame = 1
BLAST of Spo17956.1 vs. TAIR (Arabidopsis)
Match: AT1G70890.1 (MLP-like protein 43) HSP 1 Score: 136.0 bits (341), Expect = 2.100e-32 Identity = 64/145 (44.14%), Postives = 92/145 (63.45%), Query Frame = 1
BLAST of Spo17956.1 vs. TAIR (Arabidopsis)
Match: AT1G70850.1 (MLP-like protein 34) HSP 1 Score: 125.9 bits (315), Expect = 2.100e-29 Identity = 59/144 (40.97%), Postives = 94/144 (65.28%), Query Frame = 1
BLAST of Spo17956.1 vs. TAIR (Arabidopsis)
Match: AT5G28010.1 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) HSP 1 Score: 124.8 bits (312), Expect = 4.700e-29 Identity = 59/145 (40.69%), Postives = 93/145 (64.14%), Query Frame = 1
BLAST of Spo17956.1 vs. TAIR (Arabidopsis)
Match: AT1G70840.1 (MLP-like protein 31) HSP 1 Score: 124.4 bits (311), Expect = 6.200e-29 Identity = 58/145 (40.00%), Postives = 94/145 (64.83%), Query Frame = 1
BLAST of Spo17956.1 vs. TAIR (Arabidopsis)
Match: AT1G70830.1 (MLP-like protein 28) HSP 1 Score: 122.9 bits (307), Expect = 1.800e-28 Identity = 58/145 (40.00%), Postives = 92/145 (63.45%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17956.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo17956.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo17956.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo17956.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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