Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AGCCCATCATACGATAGACCGTAAAGATCGGCAAATTCGCGCCATTCTTCTCCCCCTTCGAGACTTATATAACCTCCCCCCTTTCCTTCATTTCATCCATTTTCTCTCTCCCCAAACTCGAGTGTTTCGACACTCTCTCTCACTCTGAAAACCTCGCCAAAGCGTAACAATGGCGGACCACCTCTTCAACAGCATCTCCCTCGGCGGTCGTGGCGGCACGGTTAGTTTCTCTCTTCATTTGCTGCCTCTTTCTCTCAATTTCTTTTAGCTCAGTGGTTTTCGTTTCATTTGCCCCCTTCTAACCCTAATTTTTCATGCAAAAGCTCGAAATTTCTGCGATTTCTTTTCTAGGGTTTGCTTATAACATATGCTCATCTCTTATTTCTCTTCCTGAGATTAATATTGGTAGCAAAGATGTAATTTTTTTAAAGCTTACTGATAATTTAATGTTTTATAGGGGTTAGGGTTTTTGTCTGCGTGAAATTAGGGTTTGATAAATTGAAACCGGAAGTATTATGAGAAATGGGACGAATTATACCTTCTTGTCCAGTTGATCTGACTTTGCAAATTGCAATTTCAAACCCTAGTAATTGAACCCTAATTTCGCACCATCTAGCTGTAGAAGTTCGAATTTTGTGGTTTCGGATTTATTCGCTTGAACAATAGGATTCCTGTTTTCACTGCTAGTTATAATTTGTAGAACTTACTTGAATACCCAAGAAGGTAGTTTTCAGAGGTGTATATCGAACTTGCACGGGAATAGCTGATACAGATATTGGATGCTATTATAGAAAGTAAATACTAGAGGGCTTGCTGGAGAGAGAACGAAAGGGAAAATAGAAAAGAAAAAATATTCTCTCTTCATTTCGTCTTTAAGGGCCTGTTACTAAGTGACTGAGTGCATAATATTGTACAATATTTTGTGCTCTATCACTTCGATTAAGAAGCTATTGGTTGTCATATGGTATCTGGGATTTACAAGTAACTTTATATTGGTAGATTAGACAACTAGTGAGTAAGTAAATGAAGTTGAGAGTAGATTATATTGAAATGTGTGTGGGAGGTTGCTTTTGTTTTAGCGAATATGGAGTAAGAAAGGAAGGGGAAATTCAGAAGATTAGCTTGCTGGAACACAAAGTAGGATTAGTGAAGAAGCACTTCTACAACGTTTCCGCTTTCTTTCCTGTTTTGTATTTCTCTAGCCTGACCAGGCTAAAGATGACCCCCCCCCTCCCCTNCCCCCCCCCACACCCTTCCTTCCTTTCACTTCTCCCTGCTACCAGTTTGTTGGTGTTTAGAGCATGTAGAATATTTATAGGTAATTACTGAATTTTATGTCTGTATTTATTCTGTCTTTGGTTTGTTATTGTAATTAGTTAATGCTGATCCCTTTTTTGTCCTGTGCGTGTGTTATGCAGAAGCCAGGGCAGATGAGAATCAATTCAGGCGGGATCCTGTGGAAAAAGCAGGGAGGTGGAAAAGCTGTTGAAGTTGATAAGAGTAATATCTCTGTGTTATTCTGGATGAAGGTGCAAAGGTCCACTCAACTTGGAGTTCGAAGCAAAGATGGATTGTACTATAAGTTTATAGGTTTCCGGGATACGGTGTGTTGCTTTTCTCCTGCACATTCTTTATTTCATTTGTCTACATCTGATAAAGTCATTTTGAATGTGTTTAATGTTAGTATTGTCTTGTTTCTTTTTTCTTGCCTATGCAAGTCCAACCTAATCTGCAGTTTTGA AGCCCATCATACGATAGACCGTAAAGATCGGCAAATTCGCGCCATTCTTCTCCCCCTTCGAGACTTATATAACCTCCCCCCTTTCCTTCATTTCATCCATTTTCTCTCTCCCCAAACTCGAGTGTTTCGACACTCTCTCTCACTCTGAAAACCTCGCCAAAGCGTAACAATGGCGGACCACCTCTTCAACAGCATCTCCCTCGGCGGTCGTGGCGGCACGAAGCCAGGGCAGATGAGAATCAATTCAGGCGGGATCCTGTGGAAAAAGCAGGGAGGTGGAAAAGCTGTTGAAGTTGATAAGAGTAATATCTCTGTGTTATTCTGGATGAAGGTGCAAAGGTCCACTCAACTTGGAGTTCGAAGCAAAGATGGATTGTACTATAAGTTTATAGGTTTCCGGGATACGTATTGTCTTGTTTCTTTTTTCTTGCCTATGCAAGTCCAACCTAATCTGCAGTTTTGA ATGGCGGACCACCTCTTCAACAGCATCTCCCTCGGCGGTCGTGGCGGCACGAAGCCAGGGCAGATGAGAATCAATTCAGGCGGGATCCTGTGGAAAAAGCAGGGAGGTGGAAAAGCTGTTGAAGTTGATAAGAGTAATATCTCTGTGTTATTCTGGATGAAGGTGCAAAGGTCCACTCAACTTGGAGTTCGAAGCAAAGATGGATTGTACTATAAGTTTATAGGTTTCCGGGATACGTATTGTCTTGTTTCTTTTTTCTTGCCTATGCAAGTCCAACCTAATCTGCAGTTTTGA MADHLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRSTQLGVRSKDGLYYKFIGFRDTYCLVSFFLPMQVQPNLQF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo17976.1 vs. NCBI nr
Match: gi|731336138|ref|XP_010679095.1| (PREDICTED: FACT complex subunit SSRP1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 141.4 bits (355), Expect = 8.600e-31 Identity = 71/89 (79.78%), Postives = 77/89 (86.52%), Query Frame = 1
BLAST of Spo17976.1 vs. NCBI nr
Match: gi|661893760|emb|CDP02201.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 131.0 bits (328), Expect = 1.200e-27 Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 1
BLAST of Spo17976.1 vs. NCBI nr
Match: gi|747100938|ref|XP_011098577.1| (PREDICTED: FACT complex subunit SSRP1 [Sesamum indicum]) HSP 1 Score: 130.2 bits (326), Expect = 2.000e-27 Identity = 64/89 (71.91%), Postives = 75/89 (84.27%), Query Frame = 1
BLAST of Spo17976.1 vs. NCBI nr
Match: gi|763766450|gb|KJB33665.1| (hypothetical protein B456_006G024900 [Gossypium raimondii]) HSP 1 Score: 129.8 bits (325), Expect = 2.600e-27 Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1
BLAST of Spo17976.1 vs. NCBI nr
Match: gi|823167599|ref|XP_012483714.1| (PREDICTED: FACT complex subunit SSRP1 [Gossypium raimondii]) HSP 1 Score: 129.8 bits (325), Expect = 2.600e-27 Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1
BLAST of Spo17976.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C9E7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g119730 PE=4 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 6.000e-31 Identity = 71/89 (79.78%), Postives = 77/89 (86.52%), Query Frame = 1
BLAST of Spo17976.1 vs. UniProtKB/TrEMBL
Match: A0A068U143_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039520001 PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 8.100e-28 Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 1
BLAST of Spo17976.1 vs. UniProtKB/TrEMBL
Match: A0A0D2RW08_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G024900 PE=4 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 1.800e-27 Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1
BLAST of Spo17976.1 vs. UniProtKB/TrEMBL
Match: A0A0D2SR10_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G024900 PE=4 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 1.800e-27 Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1
BLAST of Spo17976.1 vs. UniProtKB/TrEMBL
Match: A0A0D2Q247_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G024900 PE=4 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 1.800e-27 Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1
BLAST of Spo17976.1 vs. ExPASy Swiss-Prot
Match: SSRP1_CATRO (FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 1.000e-28 Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 1
BLAST of Spo17976.1 vs. ExPASy Swiss-Prot
Match: SSRP1_ARATH (FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1 SV=2) HSP 1 Score: 118.6 bits (296), Expect = 3.700e-26 Identity = 60/89 (67.42%), Postives = 70/89 (78.65%), Query Frame = 1
BLAST of Spo17976.1 vs. ExPASy Swiss-Prot
Match: SSRP1_VICFA (FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 2.000e-24 Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 1
BLAST of Spo17976.1 vs. ExPASy Swiss-Prot
Match: SSP1A_ORYSJ (FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica GN=SSRP1-A PE=2 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 2.700e-24 Identity = 47/75 (62.67%), Postives = 64/75 (85.33%), Query Frame = 1
BLAST of Spo17976.1 vs. ExPASy Swiss-Prot
Match: SSRP1_MAIZE (FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 7.800e-24 Identity = 46/75 (61.33%), Postives = 63/75 (84.00%), Query Frame = 1
BLAST of Spo17976.1 vs. TAIR (Arabidopsis)
Match: AT3G28730.1 (high mobility group) HSP 1 Score: 118.6 bits (296), Expect = 2.100e-27 Identity = 60/89 (67.42%), Postives = 70/89 (78.65%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17976.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo17976.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo17976.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo17976.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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