Spo17976 (gene)

Overview
NameSpo17976
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionFACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (Recombination signal sequence recognition protein 1)
LocationSpoScf_09592 : 782 .. 2522 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCCATCATACGATAGACCGTAAAGATCGGCAAATTCGCGCCATTCTTCTCCCCCTTCGAGACTTATATAACCTCCCCCCTTTCCTTCATTTCATCCATTTTCTCTCTCCCCAAACTCGAGTGTTTCGACACTCTCTCTCACTCTGAAAACCTCGCCAAAGCGTAACAATGGCGGACCACCTCTTCAACAGCATCTCCCTCGGCGGTCGTGGCGGCACGGTTAGTTTCTCTCTTCATTTGCTGCCTCTTTCTCTCAATTTCTTTTAGCTCAGTGGTTTTCGTTTCATTTGCCCCCTTCTAACCCTAATTTTTCATGCAAAAGCTCGAAATTTCTGCGATTTCTTTTCTAGGGTTTGCTTATAACATATGCTCATCTCTTATTTCTCTTCCTGAGATTAATATTGGTAGCAAAGATGTAATTTTTTTAAAGCTTACTGATAATTTAATGTTTTATAGGGGTTAGGGTTTTTGTCTGCGTGAAATTAGGGTTTGATAAATTGAAACCGGAAGTATTATGAGAAATGGGACGAATTATACCTTCTTGTCCAGTTGATCTGACTTTGCAAATTGCAATTTCAAACCCTAGTAATTGAACCCTAATTTCGCACCATCTAGCTGTAGAAGTTCGAATTTTGTGGTTTCGGATTTATTCGCTTGAACAATAGGATTCCTGTTTTCACTGCTAGTTATAATTTGTAGAACTTACTTGAATACCCAAGAAGGTAGTTTTCAGAGGTGTATATCGAACTTGCACGGGAATAGCTGATACAGATATTGGATGCTATTATAGAAAGTAAATACTAGAGGGCTTGCTGGAGAGAGAACGAAAGGGAAAATAGAAAAGAAAAAATATTCTCTCTTCATTTCGTCTTTAAGGGCCTGTTACTAAGTGACTGAGTGCATAATATTGTACAATATTTTGTGCTCTATCACTTCGATTAAGAAGCTATTGGTTGTCATATGGTATCTGGGATTTACAAGTAACTTTATATTGGTAGATTAGACAACTAGTGAGTAAGTAAATGAAGTTGAGAGTAGATTATATTGAAATGTGTGTGGGAGGTTGCTTTTGTTTTAGCGAATATGGAGTAAGAAAGGAAGGGGAAATTCAGAAGATTAGCTTGCTGGAACACAAAGTAGGATTAGTGAAGAAGCACTTCTACAACGTTTCCGCTTTCTTTCCTGTTTTGTATTTCTCTAGCCTGACCAGGCTAAAGATGACCCCCCCCCTCCCCTNCCCCCCCCCACACCCTTCCTTCCTTTCACTTCTCCCTGCTACCAGTTTGTTGGTGTTTAGAGCATGTAGAATATTTATAGGTAATTACTGAATTTTATGTCTGTATTTATTCTGTCTTTGGTTTGTTATTGTAATTAGTTAATGCTGATCCCTTTTTTGTCCTGTGCGTGTGTTATGCAGAAGCCAGGGCAGATGAGAATCAATTCAGGCGGGATCCTGTGGAAAAAGCAGGGAGGTGGAAAAGCTGTTGAAGTTGATAAGAGTAATATCTCTGTGTTATTCTGGATGAAGGTGCAAAGGTCCACTCAACTTGGAGTTCGAAGCAAAGATGGATTGTACTATAAGTTTATAGGTTTCCGGGATACGGTGTGTTGCTTTTCTCCTGCACATTCTTTATTTCATTTGTCTACATCTGATAAAGTCATTTTGAATGTGTTTAATGTTAGTATTGTCTTGTTTCTTTTTTCTTGCCTATGCAAGTCCAACCTAATCTGCAGTTTTGA

mRNA sequence

AGCCCATCATACGATAGACCGTAAAGATCGGCAAATTCGCGCCATTCTTCTCCCCCTTCGAGACTTATATAACCTCCCCCCTTTCCTTCATTTCATCCATTTTCTCTCTCCCCAAACTCGAGTGTTTCGACACTCTCTCTCACTCTGAAAACCTCGCCAAAGCGTAACAATGGCGGACCACCTCTTCAACAGCATCTCCCTCGGCGGTCGTGGCGGCACGAAGCCAGGGCAGATGAGAATCAATTCAGGCGGGATCCTGTGGAAAAAGCAGGGAGGTGGAAAAGCTGTTGAAGTTGATAAGAGTAATATCTCTGTGTTATTCTGGATGAAGGTGCAAAGGTCCACTCAACTTGGAGTTCGAAGCAAAGATGGATTGTACTATAAGTTTATAGGTTTCCGGGATACGTATTGTCTTGTTTCTTTTTTCTTGCCTATGCAAGTCCAACCTAATCTGCAGTTTTGA

Coding sequence (CDS)

ATGGCGGACCACCTCTTCAACAGCATCTCCCTCGGCGGTCGTGGCGGCACGAAGCCAGGGCAGATGAGAATCAATTCAGGCGGGATCCTGTGGAAAAAGCAGGGAGGTGGAAAAGCTGTTGAAGTTGATAAGAGTAATATCTCTGTGTTATTCTGGATGAAGGTGCAAAGGTCCACTCAACTTGGAGTTCGAAGCAAAGATGGATTGTACTATAAGTTTATAGGTTTCCGGGATACGTATTGTCTTGTTTCTTTTTTCTTGCCTATGCAAGTCCAACCTAATCTGCAGTTTTGA

Protein sequence

MADHLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRSTQLGVRSKDGLYYKFIGFRDTYCLVSFFLPMQVQPNLQF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo17976.1Spo17976.1mRNA


Homology
[Close]
BLAST of Spo17976.1 vs. NCBI nr
Match: gi|731336138|ref|XP_010679095.1| (PREDICTED: FACT complex subunit SSRP1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 141.4 bits (355), Expect = 8.600e-31
Identity = 71/89 (79.78%), Postives = 77/89 (86.52%), Query Frame = 1 

		  

Query: 1  MAD-HLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRST 60
          MAD HLFNS+SLGGRGG K GQ+R++SGGILWKKQGGGKAVEVDKSNIS LFWMKVQR+ 
Sbjct: 1  MADGHLFNSVSLGGRGGNKQGQIRVHSGGILWKKQGGGKAVEVDKSNISGLFWMKVQRTN 60

Query: 61 QLGVRSKDGLYYKFIGFR--DTYCLVSFF 87
          QLGVRSKDG+YYKF GFR  D   L SFF
Sbjct: 61 QLGVRSKDGVYYKFTGFRDQDVATLTSFF 89
[Close]
BLAST of Spo17976.1 vs. NCBI nr
Match: gi|661893760|emb|CDP02201.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 131.0 bits (328), Expect = 1.200e-27
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 1 

		  

Query: 1  MAD-HLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRST 60
          MAD HLFN+ISLGGRGGT PGQ+R++SGGILWKKQGGGKAVEVDKS++  L WMKV RS 
Sbjct: 1  MADGHLFNNISLGGRGGTNPGQLRVHSGGILWKKQGGGKAVEVDKSDLVGLSWMKVPRSN 60

Query: 61 QLGVRSKDGLYYKFIGFRD 79
          QLGVR KDGL+YKF GFRD
Sbjct: 61 QLGVRIKDGLFYKFTGFRD 79
[Close]
BLAST of Spo17976.1 vs. NCBI nr
Match: gi|747100938|ref|XP_011098577.1| (PREDICTED: FACT complex subunit SSRP1 [Sesamum indicum])

HSP 1 Score: 130.2 bits (326), Expect = 2.000e-27
Identity = 64/89 (71.91%), Postives = 75/89 (84.27%), Query Frame = 1 

		  

Query: 1  MAD-HLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRST 60
          MAD HLFNSISLGGRGGT PGQ++++SGG++WKKQGGGKAVEVDKS++  L WMKV RS 
Sbjct: 1  MADGHLFNSISLGGRGGTNPGQLKVHSGGVVWKKQGGGKAVEVDKSDLLGLTWMKVPRSN 60

Query: 61 QLGVRSKDGLYYKFIGFR--DTYCLVSFF 87
          QLGVR+KDGL+YKF GFR  D   L +FF
Sbjct: 61 QLGVRTKDGLHYKFTGFRDQDVATLTAFF 89
[Close]
BLAST of Spo17976.1 vs. NCBI nr
Match: gi|763766450|gb|KJB33665.1| (hypothetical protein B456_006G024900 [Gossypium raimondii])

HSP 1 Score: 129.8 bits (325), Expect = 2.600e-27
Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1 

		  

Query: 4  HLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRSTQLGV 63
          HLFN+ISLGGRGGT PGQ++I+SGGILWKKQGGGKAVEVDKS+I  + WMKV R+ QLGV
Sbjct: 5  HLFNNISLGGRGGTNPGQLKISSGGILWKKQGGGKAVEVDKSDILGVTWMKVPRTNQLGV 64

Query: 64 RSKDGLYYKFIGFR--DTYCLVSFF 87
          R KDGLYYKF GFR  D   L SFF
Sbjct: 65 RIKDGLYYKFTGFRDQDVASLTSFF 89
[Close]
BLAST of Spo17976.1 vs. NCBI nr
Match: gi|823167599|ref|XP_012483714.1| (PREDICTED: FACT complex subunit SSRP1 [Gossypium raimondii])

HSP 1 Score: 129.8 bits (325), Expect = 2.600e-27
Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1 

		  

Query: 4  HLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRSTQLGV 63
          HLFN+ISLGGRGGT PGQ++I+SGGILWKKQGGGKAVEVDKS+I  + WMKV R+ QLGV
Sbjct: 5  HLFNNISLGGRGGTNPGQLKISSGGILWKKQGGGKAVEVDKSDILGVTWMKVPRTNQLGV 64

Query: 64 RSKDGLYYKFIGFR--DTYCLVSFF 87
          R KDGLYYKF GFR  D   L SFF
Sbjct: 65 RIKDGLYYKFTGFRDQDVASLTSFF 89
[Close]
BLAST of Spo17976.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C9E7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g119730 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 6.000e-31
Identity = 71/89 (79.78%), Postives = 77/89 (86.52%), Query Frame = 1 

		  

Query: 1  MAD-HLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRST 60
          MAD HLFNS+SLGGRGG K GQ+R++SGGILWKKQGGGKAVEVDKSNIS LFWMKVQR+ 
Sbjct: 1  MADGHLFNSVSLGGRGGNKQGQIRVHSGGILWKKQGGGKAVEVDKSNISGLFWMKVQRTN 60

Query: 61 QLGVRSKDGLYYKFIGFR--DTYCLVSFF 87
          QLGVRSKDG+YYKF GFR  D   L SFF
Sbjct: 61 QLGVRSKDGVYYKFTGFRDQDVATLTSFF 89
[Close]
BLAST of Spo17976.1 vs. UniProtKB/TrEMBL
Match: A0A068U143_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039520001 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.100e-28
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 1 

		  

Query: 1  MAD-HLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRST 60
          MAD HLFN+ISLGGRGGT PGQ+R++SGGILWKKQGGGKAVEVDKS++  L WMKV RS 
Sbjct: 1  MADGHLFNNISLGGRGGTNPGQLRVHSGGILWKKQGGGKAVEVDKSDLVGLSWMKVPRSN 60

Query: 61 QLGVRSKDGLYYKFIGFRD 79
          QLGVR KDGL+YKF GFRD
Sbjct: 61 QLGVRIKDGLFYKFTGFRD 79
[Close]
BLAST of Spo17976.1 vs. UniProtKB/TrEMBL
Match: A0A0D2RW08_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G024900 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.800e-27
Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1 

		  

Query: 4  HLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRSTQLGV 63
          HLFN+ISLGGRGGT PGQ++I+SGGILWKKQGGGKAVEVDKS+I  + WMKV R+ QLGV
Sbjct: 5  HLFNNISLGGRGGTNPGQLKISSGGILWKKQGGGKAVEVDKSDILGVTWMKVPRTNQLGV 64

Query: 64 RSKDGLYYKFIGFR--DTYCLVSFF 87
          R KDGLYYKF GFR  D   L SFF
Sbjct: 65 RIKDGLYYKFTGFRDQDVASLTSFF 89
[Close]
BLAST of Spo17976.1 vs. UniProtKB/TrEMBL
Match: A0A0D2SR10_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G024900 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.800e-27
Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1 

		  

Query: 4  HLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRSTQLGV 63
          HLFN+ISLGGRGGT PGQ++I+SGGILWKKQGGGKAVEVDKS+I  + WMKV R+ QLGV
Sbjct: 5  HLFNNISLGGRGGTNPGQLKISSGGILWKKQGGGKAVEVDKSDILGVTWMKVPRTNQLGV 64

Query: 64 RSKDGLYYKFIGFR--DTYCLVSFF 87
          R KDGLYYKF GFR  D   L SFF
Sbjct: 65 RIKDGLYYKFTGFRDQDVASLTSFF 89
[Close]
BLAST of Spo17976.1 vs. UniProtKB/TrEMBL
Match: A0A0D2Q247_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G024900 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.800e-27
Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1 

		  

Query: 4  HLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRSTQLGV 63
          HLFN+ISLGGRGGT PGQ++I+SGGILWKKQGGGKAVEVDKS+I  + WMKV R+ QLGV
Sbjct: 5  HLFNNISLGGRGGTNPGQLKISSGGILWKKQGGGKAVEVDKSDILGVTWMKVPRTNQLGV 64

Query: 64 RSKDGLYYKFIGFR--DTYCLVSFF 87
          R KDGLYYKF GFR  D   L SFF
Sbjct: 65 RIKDGLYYKFTGFRDQDVASLTSFF 89
[Close]
BLAST of Spo17976.1 vs. ExPASy Swiss-Prot
Match: SSRP1_CATRO (FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.000e-28
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 1 

		  

Query: 1  MAD-HLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRST 60
          MAD HLFN+I+LGGRGGT PGQ+R++SGGILWKKQGG KAVEVDKS++  L WMKV RS 
Sbjct: 1  MADGHLFNNITLGGRGGTNPGQLRVHSGGILWKKQGGAKAVEVDKSDMVGLTWMKVPRSN 60

Query: 61 QLGVRSKDGLYYKFIGFRD 79
          QLGVR KDGL+YKF GFRD
Sbjct: 61 QLGVRIKDGLFYKFTGFRD 79
[Close]
BLAST of Spo17976.1 vs. ExPASy Swiss-Prot
Match: SSRP1_ARATH (FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 3.700e-26
Identity = 60/89 (67.42%), Postives = 70/89 (78.65%), Query Frame = 1 

		  

Query: 1  MAD-HLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRST 60
          MAD H FN+ISL GRGG  PG ++INSGGI WKKQGGGKAVEVD+S+I  + W KV +S 
Sbjct: 1  MADGHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSN 60

Query: 61 QLGVRSKDGLYYKFIGFR--DTYCLVSFF 87
          QLGV++KDGLYYKF+GFR  D   L SFF
Sbjct: 61 QLGVKTKDGLYYKFVGFRDQDVPSLSSFF 89
[Close]
BLAST of Spo17976.1 vs. ExPASy Swiss-Prot
Match: SSRP1_VICFA (FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.000e-24
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 1 

		  

Query: 4  HLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRSTQLGV 63
          HLFN+I+LG RGGT PGQ++I SGGILWK+QGGGK ++VDK++I  + WMKV ++ QLGV
Sbjct: 5  HLFNNITLGXRGGTNPGQIKIYSGGILWKRQGGGKTIDVDKTDIMGVTWMKVPKTNQLGV 64

Query: 64 RSKDGLYYKFIGFR--DTYCLVSFF 87
          + KDGL YKF GFR  D   L +FF
Sbjct: 65 QIKDGLLYKFTGFRDQDVVSLTNFF 89
[Close]
BLAST of Spo17976.1 vs. ExPASy Swiss-Prot
Match: SSP1A_ORYSJ (FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica GN=SSRP1-A PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.700e-24
Identity = 47/75 (62.67%), Postives = 64/75 (85.33%), Query Frame = 1 

		  

Query: 4  HLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRSTQLGV 63
          HLFN+I LGGR G+ PGQ ++ SGG+ WK+QGGGK +E++KS+++ + WMKV R+ QLGV
Sbjct: 5  HLFNNILLGGRAGSNPGQFKVYSGGLAWKRQGGGKTIEIEKSDLTSVTWMKVPRAYQLGV 64

Query: 64 RSKDGLYYKFIGFRD 79
          R+KDGL+YKFIGFR+
Sbjct: 65 RTKDGLFYKFIGFRE 79
[Close]
BLAST of Spo17976.1 vs. ExPASy Swiss-Prot
Match: SSRP1_MAIZE (FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.800e-24
Identity = 46/75 (61.33%), Postives = 63/75 (84.00%), Query Frame = 1 

		  

Query: 4  HLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRSTQLGV 63
          H FN+I LGGRGGT PGQ +++SGG+ WK+QGGGK +E+DK++++ + WMKV R+ QLGV
Sbjct: 5  HHFNNILLGGRGGTNPGQFKVHSGGLAWKRQGGGKTIEIDKADVTAVTWMKVPRAYQLGV 64

Query: 64 RSKDGLYYKFIGFRD 79
          R K GL+Y+FIGFR+
Sbjct: 65 RIKAGLFYRFIGFRE 79
[Close]
BLAST of Spo17976.1 vs. TAIR (Arabidopsis)
Match: AT3G28730.1 (high mobility group)

HSP 1 Score: 118.6 bits (296), Expect = 2.100e-27
Identity = 60/89 (67.42%), Postives = 70/89 (78.65%), Query Frame = 1 

		  

Query: 1  MAD-HLFNSISLGGRGGTKPGQMRINSGGILWKKQGGGKAVEVDKSNISVLFWMKVQRST 60
          MAD H FN+ISL GRGG  PG ++INSGGI WKKQGGGKAVEVD+S+I  + W KV +S 
Sbjct: 1  MADGHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSN 60

Query: 61 QLGVRSKDGLYYKFIGFR--DTYCLVSFF 87
          QLGV++KDGLYYKF+GFR  D   L SFF
Sbjct: 61 QLGVKTKDGLYYKFVGFRDQDVPSLSSFF 89
The following BLAST results are available for this feature:
BLAST of Spo17976.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731336138|ref|XP_010679095.1|8.6e-3179.7PREDICTED: FACT complex subuni... [more]
gi|661893760|emb|CDP02201.1|1.2e-2779.7unnamed protein product [Coffe... [more]
gi|747100938|ref|XP_011098577.1|2.0e-2771.9PREDICTED: FACT complex subuni... [more]
gi|763766450|gb|KJB33665.1|2.6e-2775.2hypothetical protein B456_006G... [more]
gi|823167599|ref|XP_012483714.1|2.6e-2775.2PREDICTED: FACT complex subuni... [more]
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BLAST of Spo17976.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8C9E7_BETVU6.0e-3179.7Uncharacterized protein OS=Bet... [more]
A0A068U143_COFCA8.1e-2879.7Uncharacterized protein OS=Cof... [more]
A0A0D2RW08_GOSRA1.8e-2775.2Uncharacterized protein OS=Gos... [more]
A0A0D2SR10_GOSRA1.8e-2775.2Uncharacterized protein OS=Gos... [more]
A0A0D2Q247_GOSRA1.8e-2775.2Uncharacterized protein OS=Gos... [more]
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BLAST of Spo17976.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SSRP1_CATRO1.0e-2877.2FACT complex subunit SSRP1 OS=... [more]
SSRP1_ARATH3.7e-2667.4FACT complex subunit SSRP1 OS=... [more]
SSRP1_VICFA2.0e-2462.3FACT complex subunit SSRP1 OS=... [more]
SSP1A_ORYSJ2.7e-2462.6FACT complex subunit SSRP1-A O... [more]
SSRP1_MAIZE7.8e-2461.3FACT complex subunit SSRP1 OS=... [more]
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BLAST of Spo17976.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G28730.12.1e-2767.4high mobility group[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011993PH domain-likeGENE3D2.30.29.30coord: 2..78
score: 3.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009887 animal organ morphogenesis
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0007267 cell-cell signaling
biological_process GO:0010051 xylem and phloem pattern formation
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0009414 response to water deprivation
biological_process GO:0010050 vegetative phase change
biological_process GO:0006366 transcription by RNA polymerase II
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0006260 DNA replication
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0006306 DNA methylation
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0006281 DNA repair
biological_process GO:0048439 flower morphogenesis
biological_process GO:0010014 meristem initiation
biological_process GO:0010073 meristem maintenance
biological_process GO:0006346 methylation-dependent chromatin silencing
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006334 nucleosome assembly
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0009579 thylakoid
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005886 plasma membrane
cellular_component GO:0000786 nucleosome
cellular_component GO:0005730 nucleolus
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005829 cytosol
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005719 nuclear euchromatin
cellular_component GO:0035101 FACT complex
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0032440 2-alkenal reductase [NAD(P)] activity
RNA-Seq Expression