Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GATGCGGTTTAGACCAAACTGAAGCAATGTTATCCGGCCTAAAGGGGGTGGGCATATTTCCAACCAAGTGCAAAAGAGTTGGAACAAAACAAGAGACAAGAATTCTTTAAGGCTGAAACTTAGGCAAAAGAAAACAAGTAAAGAAAGTAGTGACCCTCACGATCATTCACTCATTTCATTTGTTGTTAGTGCACCTCACGATCTCCCCTTCTCTCTCTCATTCTCTCTCTCCTCGCTCCTTCCGGATCACCACTAGAAACCTTCTCTTCTCCACTCTTCCTCTTTCCCCATCTCTCTCTCTCTCTCATCTCTCTTCTCTCTCTCTCTCTTTCGCTTTCTCTCTCCTCTCCCAATCAGTTAACCAACAACAACAAACAACAAACAACTCCCTAACTTGTCTCATTTGACTTTTGGAACCTTTATCATTTCTGGGTTCCTCTGTAATAGTTTATTGTTGGCAATTGTTTTGTTGTTGGTGTTTGAAGGGGAGAAAGAGAAATGGGGTTCGACGAAAACAAGGAGGTTGGGGAGAAGAGTGGAGCAGAGAAAGATATTGATGAAAATGAAGAAACAGAGAAACTTGGGAGGCAAATGAGCGAGAATTCTCTCTACACCACTGATCATGAGGAAGAAGATTATCAGGGAAAACTTGAATTGGGTCCTCAATTCACCATTAAAGAACAATTAGAAAAAGACAAGGTCTCTTTTTTTTTATTTGGTCTAGAATATGTCAGAATCTCTTTCTCTTTTATAAGAATTTTAACTGGTATGTTTGTGACATTGGGAATGCAGGATGATGAGAGTTTGAGGAAGTGGAAGGAACAACTCCTTGGAAGTGTTGATTTGGATGAAATTGGAGGTACATTATATATTTTTTATTTCATTGAATTTATTTTAGAGATTTCTTCATGATAGTTCTATTATATGTTAAGACAGAAGATTTTTTTGGTGTGATGTCAATGCCATTGGTAAATTTTATAATGCTTGTCTTCCAATTTGCCACATCTTATATCAGTTACGTAGTAGTTAAATCTCTAAATACAATCAATTTGCCTCTTGATCTGTATATGTATATATATAGGGATTAGGGGCACATAATTATTGGGAAAAACATTAACGGTTTTTGATGCTTAATAACTTAATAATAATATTGATGATTTACTACATTTGCGGGTGTAGTACCAATTGTTTGTTGGTTCAGTGGTGATTGGGGATGAACTCGGTAGGGAGGACCATGTTCGATCCCCTGCAACAACAATTGGGACCTAGAATTCGCCTCGAATCCGGATTAGCCCAGGGTGAACCGGGTGCTAACACCAAAAAAAAAAGCTTTATTTTTCGAGACAGCGCTTGAATGTTTTCGGCTTCTTTAAATTATTTGTCAACATGCCATTTAGATGTGTTCCTTTGAATTCTGCTAAGTAAGATAAGGCGCACTCAAGTCCACATACGTATTTTAGGTGTGTTTGCCTGTTGTGTATGTGTTTACAATTTAGCATGGCCACACGGGTAGAGATAGCTGATTGAATTGAAGAGGTTGAGTAAAAAGGGTAAAAGCACACCCATTCTTGTGTAATCTTTACTGCTGGTAGTTAACTTGGCTTGACAAATTATGCGCCGTGTTTGTGAATTTCCTTTATTGAAGAAATTCAGCCACTGTTTGCATAAGACTAAGAGGCGTATAGATGGGAAATTTTATGGCACTTGCCTAATTGATAGGCTGATTCATCCCTTATTGATGATTCTTTGTGTTGAAGGTTCCTGGATTGAATAATGAGAGGATGACATATAGGCTCGGGTCGTTCAAGTTACTGTTCCAATGGATTACTTGACATGTGGTTTATAACATTGTAGCTTATCCTCGAGTTATCATTGAGTTTTTGTTTATTCGGACGGTAGTCCAACTTGATGATTATTTCTTCAACTAATCATTTCAATGCAAGACAATAGCATCTTCATCATTTCTTGCCAAGTACATGAGAAAACTTTAAGCATTATGTTGTTTGGCTAGTTAAATGGGATAATTCATCATTATGTTTTTTTTACTGTAACAAAATCTTTAATTATTCAGTAATGTATGTTATTGCATGGAACTTTTTGAAGGTCCCGTTAAAAGTTCGGTTTTTGTATATTGCAGAAGCCCTTGAACCAGAAGTGAAGATCCTTAGCCTTTCTATTCTCTCACCAGACAGACCTGACATCTTTCTTCCAATTCCGGAGGATGGGAAACCAATATCACCATGGTTTACTTTGAAGGAAGGTAGCCGATACAAATTGAGATTTACTTTCCAGGTTAACAATAATATCGTACTTGGGCTGAAGTACGCTAACACTGTGTGGAAAACTGGCATGAAAGGTATGCTTTTGTTACAGTATTCGTTTAGCTCGTCTGAATATTGAAGATAAAGATGGTAGAAACATTTGGCTTATGTAATATTATTTTCAGTGGATAAAACTAAAGAGATGCTTGGAACTTTTAGTCCTCAACCGGAGTCATACACGCATGAGATGCCAGAAGAGACTACCCCTTCTGGTTACTTTGCCCGAGGATCATACACTGCAAGAACAAAGGTTAGATACATTCAATAAACTTTATTCTCCTTATACATGTGCTCAAAGTTTATCTATTTATTAATATTTTAACTCCTTATGAAATTGAGAAGAAAAGGTTAGGTCTACTTACGAGCTATTGCATTTTTCACTTATCTTTTCCTTCAGAAAATCATCAAGTGTGAAATAACTGAAGAAGCATTATGTTTTAAAACGGGAAATTATTTTAGTTAGAAGGTTTTAACTGATGATAATCTATCTATCATTTGTTACTGTTAAAAGGATATCCTCCTATCTTCGTCCCTCAAGTATGTAACTTTGTAAGTCCATCATAAAATGCTTTTCAGATCATTCAAAGCTTTTAACTAGATATCCTTCTGTACCCTTTCTCCTACCTTTCAATATTCTACTTTCCTGTCAGGCCGTCACAGTTTTCAGAATTTTGAAATTATTAGGGTCTTCAATTCAGGCAATCTGCCATATTCTTTGGACCACATTGGTGGTAACCAACACTCATGTAAAAGATGTGAAATGACTTGTCTTCATTAATAGTTTTGCTTGGGTTGAATGAAGTATACGTTTCTTTGGTTTTTGAACTATGGATTTTTATTTGATCCGTGTTAGGAAAATATCGTGCCTATTTTAAGGCAACAAGCTAGAATCCTTCTTGCTGTGATGACTGTTCTCATTGCTTGTTTGATGATAGACGTGTGAAGAATCCTGATTGCATGCGACAAAATTCAGAGTGTATCGTGAATGGGATGAAAATGTGACATGAAATTTAACTTCTTTTCTATTATTTCGCAGTTTCTTGATGATGATAACAAGTGCTACTTGGAGATCAATTACACATTTGACATTCGTAAAGATTGGTTAAGTACATGAGTATAAGATTCGAGCATGATCAAGTCTATTTAACCAAATATTCTTCAACTCCTAGTCCTAACCCCTGCCCGGTTCTATCCTCCCAAGATGAATATAGGTTCTCAAACTTGTTATGTTCGCTCAATTTGTTTTCTTTTCTATTCTTTTTTCAAATATATCAATGAGAAAAGAACAAAAAAGAGGAAGAAAAAAAAAGAAACTCAGAGATGTTCTTGTGTAATAGGAGTAGCAGACTTTGGCTCAGTTTGCTGTTTTCGCGCTACCTTTGATTCTTGGAGACTCAAATCATTTTCGGCTAATTGAAAATGTAGCAGTTTCTTTTTCCTTTCTCTTTAGCAATTCATTTGGGTTCGAGTTTGTTGTTATGGGTCACCAACTTGAATTTATGTTGTTTACCAAGTTTGAATATGAAGTGCCCAAAGACCGAAGGTCTTCCTACAAATTTAAATCCTATCTTCATTTGCTTTGCAAGTAGAATGAGGCACATACTACCAATTGAGGTTGGCATGAGTGGTTAAGGGCATTTTGCTCCTTAATCAAGGTCTCGGGTTCGAGTCTTGGAAATGAAAAAAATCTCAACTGGGAGGGATGCTGCCTATCGAGGTACCCATGCAAACTCCAGCAGGAGATTAGTCC GATGCGGTTTAGACCAAACTGAAGCAATGTTATCCGGCCTAAAGGGGGTGGGCATATTTCCAACCAAGTGCAAAAGAGTTGGAACAAAACAAGAGACAAGAATTCTTTAAGGCTGAAACTTAGGCAAAAGAAAACAAGTAAAGAAAGTAGTGACCCTCACGATCATTCACTCATTTCATTTGTTGTTAGTGCACCTCACGATCTCCCCTTCTCTCTCTCATTCTCTCTCTCCTCGCTCCTTCCGGATCACCACTAGAAACCTTCTCTTCTCCACTCTTCCTCTTTCCCCATCTCTCTCTCTCTCTCATCTCTCTTCTCTCTCTCTCTCTTTCGCTTTCTCTCTCCTCTCCCAATCAGTTAACCAACAACAACAAACAACAAACAACTCCCTAACTTGTCTCATTTGACTTTTGGAACCTTTATCATTTCTGGGTTCCTCTGTAATAGTTTATTGTTGGCAATTGTTTTGTTGTTGGTGTTTGAAGGGGAGAAAGAGAAATGGGGTTCGACGAAAACAAGGAGGTTGGGGAGAAGAGTGGAGCAGAGAAAGATATTGATGAAAATGAAGAAACAGAGAAACTTGGGAGGCAAATGAGCGAGAATTCTCTCTACACCACTGATCATGAGGAAGAAGATTATCAGGGAAAACTTGAATTGGGTCCTCAATTCACCATTAAAGAACAATTAGAAAAAGACAAGGATGATGAGAGTTTGAGGAAGTGGAAGGAACAACTCCTTGGAAGTGTTGATTTGGATGAAATTGGAGAAGCCCTTGAACCAGAAGTGAAGATCCTTAGCCTTTCTATTCTCTCACCAGACAGACCTGACATCTTTCTTCCAATTCCGGAGGATGGGAAACCAATATCACCATGGTTTACTTTGAAGGAAGGTAGCCGATACAAATTGAGATTTACTTTCCAGGTTAACAATAATATCGTACTTGGGCTGAAGTACGCTAACACTGTGTGGAAAACTGGCATGAAAGTGGATAAAACTAAAGAGATGCTTGGAACTTTTAGTCCTCAACCGGAGTCATACACGCATGAGATGCCAGAAGAGACTACCCCTTCTGGTTACTTTGCCCGAGGATCATACACTGCAAGAACAAAGTTTCTTGATGATGATAACAAGTGCTACTTGGAGATCAATTACACATTTGACATTCGTAAAGATTGGTTAAGTACATGAGTATAAGATTCGAGCATGATCAAGTCTATTTAACCAAATATTCTTCAACTCCTAGTCCTAACCCCTGCCCGGTTCTATCCTCCCAAGATGAATATAGGTTCTCAAACTTGTTATGTTCGCTCAATTTGTTTTCTTTTCTATTCTTTTTTCAAATATATCAATGAGAAAAGAACAAAAAAGAGGAAGAAAAAAAAAGAAACTCAGAGATGTTCTTGTGTAATAGGAGTAGCAGACTTTGGCTCAGTTTGCTGTTTTCGCGCTACCTTTGATTCTTGGAGACTCAAATCATTTTCGGCTAATTGAAAATGTAGCAGTTTCTTTTTCCTTTCTCTTTAGCAATTCATTTGGGTTCGAGTTTGTTGTTATGGGTCACCAACTTGAATTTATGTTGTTTACCAAGTTTGAATATGAAGTGCCCAAAGACCGAAGGTCTTCCTACAAATTTAAATCCTATCTTCATTTGCTTTGCAAGTAGAATGAGGCACATACTACCAATTGAGGTTGGCATGAGTGGTTAAGGGCATTTTGCTCCTTAATCAAGGTCTCGGGTTCGAGTCTTGGAAATGAAAAAAATCTCAACTGGGAGGGATGCTGCCTATCGAGGTACCCATGCAAACTCCAGCAGGAGATTAGTCC ATGGGGTTCGACGAAAACAAGGAGGTTGGGGAGAAGAGTGGAGCAGAGAAAGATATTGATGAAAATGAAGAAACAGAGAAACTTGGGAGGCAAATGAGCGAGAATTCTCTCTACACCACTGATCATGAGGAAGAAGATTATCAGGGAAAACTTGAATTGGGTCCTCAATTCACCATTAAAGAACAATTAGAAAAAGACAAGGATGATGAGAGTTTGAGGAAGTGGAAGGAACAACTCCTTGGAAGTGTTGATTTGGATGAAATTGGAGAAGCCCTTGAACCAGAAGTGAAGATCCTTAGCCTTTCTATTCTCTCACCAGACAGACCTGACATCTTTCTTCCAATTCCGGAGGATGGGAAACCAATATCACCATGGTTTACTTTGAAGGAAGGTAGCCGATACAAATTGAGATTTACTTTCCAGGTTAACAATAATATCGTACTTGGGCTGAAGTACGCTAACACTGTGTGGAAAACTGGCATGAAAGTGGATAAAACTAAAGAGATGCTTGGAACTTTTAGTCCTCAACCGGAGTCATACACGCATGAGATGCCAGAAGAGACTACCCCTTCTGGTTACTTTGCCCGAGGATCATACACTGCAAGAACAAAGTTTCTTGATGATGATAACAAGTGCTACTTGGAGATCAATTACACATTTGACATTCGTAAAGATTGGTTAAGTACATGA MGFDENKEVGEKSGAEKDIDENEETEKLGRQMSENSLYTTDHEEEDYQGKLELGPQFTIKEQLEKDKDDESLRKWKEQLLGSVDLDEIGEALEPEVKILSLSILSPDRPDIFLPIPEDGKPISPWFTLKEGSRYKLRFTFQVNNNIVLGLKYANTVWKTGMKVDKTKEMLGTFSPQPESYTHEMPEETTPSGYFARGSYTARTKFLDDDNKCYLEINYTFDIRKDWLST Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo17986.1 vs. NCBI nr
Match: gi|902161308|gb|KNA06565.1| (hypothetical protein SOVF_179840 [Spinacia oleracea]) HSP 1 Score: 461.5 bits (1186), Expect = 8.800e-127 Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1
BLAST of Spo17986.1 vs. NCBI nr
Match: gi|731363676|ref|XP_010693554.1| (PREDICTED: rho GDP-dissociation inhibitor 1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 427.2 bits (1097), Expect = 1.800e-116 Identity = 212/231 (91.77%), Postives = 223/231 (96.54%), Query Frame = 1
BLAST of Spo17986.1 vs. NCBI nr
Match: gi|870846538|gb|KMS99099.1| (hypothetical protein BVRB_3g066970 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 404.8 bits (1039), Expect = 9.800e-110 Identity = 197/209 (94.26%), Postives = 204/209 (97.61%), Query Frame = 1
BLAST of Spo17986.1 vs. NCBI nr
Match: gi|659110981|ref|XP_008455513.1| (PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis melo]) HSP 1 Score: 341.3 bits (874), Expect = 1.300e-90 Identity = 169/229 (73.80%), Postives = 194/229 (84.72%), Query Frame = 1
BLAST of Spo17986.1 vs. NCBI nr
Match: gi|593567214|ref|XP_007142519.1| (hypothetical protein PHAVU_008G287600g [Phaseolus vulgaris]) HSP 1 Score: 338.6 bits (867), Expect = 8.600e-90 Identity = 165/226 (73.01%), Postives = 189/226 (83.63%), Query Frame = 1
BLAST of Spo17986.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QH55_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_179840 PE=4 SV=1) HSP 1 Score: 461.5 bits (1186), Expect = 6.200e-127 Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1
BLAST of Spo17986.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BCN2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g066970 PE=4 SV=1) HSP 1 Score: 404.8 bits (1039), Expect = 6.800e-110 Identity = 197/209 (94.26%), Postives = 204/209 (97.61%), Query Frame = 1
BLAST of Spo17986.1 vs. UniProtKB/TrEMBL
Match: V7BCB0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G287600g PE=4 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 6.000e-90 Identity = 165/226 (73.01%), Postives = 189/226 (83.63%), Query Frame = 1
BLAST of Spo17986.1 vs. UniProtKB/TrEMBL
Match: W9SJR3_9ROSA (Rho GDP-dissociation inhibitor 1 OS=Morus notabilis GN=L484_020053 PE=4 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 6.000e-90 Identity = 176/237 (74.26%), Postives = 192/237 (81.01%), Query Frame = 1
BLAST of Spo17986.1 vs. UniProtKB/TrEMBL
Match: A0A0A0K6K3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037500 PE=4 SV=1) HSP 1 Score: 335.9 bits (860), Expect = 3.900e-89 Identity = 167/229 (72.93%), Postives = 190/229 (82.97%), Query Frame = 1
BLAST of Spo17986.1 vs. ExPASy Swiss-Prot
Match: GDIR_ARATH (Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1) HSP 1 Score: 308.1 bits (788), Expect = 7.800e-83 Identity = 161/232 (69.40%), Postives = 185/232 (79.74%), Query Frame = 1
BLAST of Spo17986.1 vs. ExPASy Swiss-Prot
Match: GDIR2_MOUSE (Rho GDP-dissociation inhibitor 2 OS=Mus musculus GN=Arhgdib PE=1 SV=3) HSP 1 Score: 124.8 bits (312), Expect = 1.200e-27 Identity = 72/190 (37.89%), Postives = 108/190 (56.84%), Query Frame = 1
BLAST of Spo17986.1 vs. ExPASy Swiss-Prot
Match: GDIR2_BOVIN (Rho GDP-dissociation inhibitor 2 OS=Bos taurus GN=ARHGDIB PE=2 SV=3) HSP 1 Score: 122.9 bits (307), Expect = 4.700e-27 Identity = 71/190 (37.37%), Postives = 108/190 (56.84%), Query Frame = 1
BLAST of Spo17986.1 vs. ExPASy Swiss-Prot
Match: GDIR1_MACFA (Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA PE=2 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 1.800e-26 Identity = 72/205 (35.12%), Postives = 114/205 (55.61%), Query Frame = 1
BLAST of Spo17986.1 vs. ExPASy Swiss-Prot
Match: GDIR1_HUMAN (Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1 SV=3) HSP 1 Score: 120.9 bits (302), Expect = 1.800e-26 Identity = 72/205 (35.12%), Postives = 114/205 (55.61%), Query Frame = 1
BLAST of Spo17986.1 vs. TAIR (Arabidopsis)
Match: AT3G07880.1 (Immunoglobulin E-set superfamily protein) HSP 1 Score: 308.1 bits (788), Expect = 4.400e-84 Identity = 161/232 (69.40%), Postives = 185/232 (79.74%), Query Frame = 1
BLAST of Spo17986.1 vs. TAIR (Arabidopsis)
Match: AT1G62450.1 (Immunoglobulin E-set superfamily protein) HSP 1 Score: 282.7 bits (722), Expect = 2.000e-76 Identity = 147/228 (64.47%), Postives = 171/228 (75.00%), Query Frame = 1
BLAST of Spo17986.1 vs. TAIR (Arabidopsis)
Match: AT1G12070.1 (Immunoglobulin E-set superfamily protein) HSP 1 Score: 276.6 bits (706), Expect = 1.400e-74 Identity = 144/226 (63.72%), Postives = 172/226 (76.11%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17986.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo17986.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo17986.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo17986.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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