Spo18044 (gene)

Overview
NameSpo18044
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPhot (Precursor)
LocationSpoScf_00434 : 175495 .. 176497 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGNNNNNNNNNNCGATTTGGACGTATATGTAGAAATATTTCTCATTATTATAGCGGCTCTTCAAGAAAAAAAAGTTTGTATCGAATAAAGTATATACTTCGACTTTCTTGTGCTAGAACTTTGTCTCGTAAACACAAAAGTACTGTACGTGCTTTTTTGAAAAGATTAGGTTCAGAATTTTTAGAAGAATTCTTTACAGAGGAAGAAAAAGCTCTTTCTTTGATCTTACCAAGAGATTCTTCTATCTCACGGGGATTATATAGAGGGCGTATTTGGTATTTGGATATTATTTGTATTCATAATTTGGCCAATGATGAATGATTTATTATGAGAGTGTCTAAATGAAATGGGAATTATCCCGAAATGAATGGAGGGATAAGATAAAAAAAATTCATTCATTTTTATACTGAAATGCTTATGCAATTAAGGGTTGAATATTCAACTTTGTTCGAGTTCCCCCTAGAAAGGGAACTGAGTGTAAAATTTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGAGGTTTTTTCTTTTTTTTTTTAACAGGGAAATTATCTACTCCATCCGATTGGTTCCGGGTTCGAGTCCCGGGCAACCCATTTTTTAA

mRNA sequence

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAGTGGGAAATTATCTACTCCATCCGATTGGTTCCGGGTTCGAGTCCCGGGCAACCCATTTTTTAA

Coding sequence (CDS)

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAGTGGGAAATTATCTACTCCATCCGATTGGTTCCGGGTTCGAGTCCCGGGCAACCCATTTTTTAA

Protein sequence

MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWEIIYSIRLVPGSSPGQPIF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo18044.1Spo18044.1mRNA


Homology
[Close]
BLAST of Spo18044.1 vs. NCBI nr
Match: gi|112030956|gb|ABH88068.1| (photosystem II protein D1 (chloroplast) [Phaseolus vulgaris])

HSP 1 Score: 214.5 bits (545), Expect = 1.000e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 7   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 66

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 67  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 111
[Close]
BLAST of Spo18044.1 vs. NCBI nr
Match: gi|296033663|gb|ADG84709.1| (PsbA, partial (plastid) [Dianthus cretaceus])

HSP 1 Score: 214.5 bits (545), Expect = 1.000e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 7   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 66

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 67  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 111
[Close]
BLAST of Spo18044.1 vs. NCBI nr
Match: gi|663060354|ref|YP_009046894.1| (photosystem II protein D1 (chloroplast) [Raphanus sativus])

HSP 1 Score: 214.5 bits (545), Expect = 1.000e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105
[Close]
BLAST of Spo18044.1 vs. NCBI nr
Match: gi|66840809|emb|CAH57473.1| (PSII 32 kD protein, partial (chloroplast) [Beta vulgaris subsp. maritima])

HSP 1 Score: 214.5 bits (545), Expect = 1.000e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105
[Close]
BLAST of Spo18044.1 vs. NCBI nr
Match: gi|669216557|gb|AII18210.1| (photosystem II protein D1, partial (chloroplast) [Viburnum clemensae])

HSP 1 Score: 214.5 bits (545), Expect = 1.000e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105
[Close]
BLAST of Spo18044.1 vs. UniProtKB/TrEMBL
Match: D6NHU5_9CARY (PsbA (Fragment) OS=Dianthus glacialis GN=psbA PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.100e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 7   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 66

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 67  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 111
[Close]
BLAST of Spo18044.1 vs. UniProtKB/TrEMBL
Match: A0A142DR16_9LAMI (Photosystem II protein D1 OS=Stachys coccinea GN=psbA PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.100e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105
[Close]
BLAST of Spo18044.1 vs. UniProtKB/TrEMBL
Match: A0A0K1ZAL6_NEPCA (Photosystem II protein D1 OS=Nepeta cataria GN=psbA PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.100e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105
[Close]
BLAST of Spo18044.1 vs. UniProtKB/TrEMBL
Match: F1KBY7_CARCG (Photosystem II protein D1 OS=Carpenteria californica GN=psbA PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.100e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105
[Close]
BLAST of Spo18044.1 vs. UniProtKB/TrEMBL
Match: A0A161G3M7_9SOLA (Photosystem II protein D1 OS=Iochroma grandiflorum GN=psbA PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.100e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105
[Close]
BLAST of Spo18044.1 vs. ExPASy Swiss-Prot
Match: PSBA_NASOF (Photosystem II protein D1 OS=Nasturtium officinale GN=psbA PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.400e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105
[Close]
BLAST of Spo18044.1 vs. ExPASy Swiss-Prot
Match: PSBA_MANES (Photosystem II protein D1 OS=Manihot esculenta GN=psbA PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.400e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105
[Close]
BLAST of Spo18044.1 vs. ExPASy Swiss-Prot
Match: PSBA_LACSA (Photosystem II protein D1 OS=Lactuca sativa GN=psbA PE=3 SV=2)

HSP 1 Score: 214.5 bits (545), Expect = 6.400e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105
[Close]
BLAST of Spo18044.1 vs. ExPASy Swiss-Prot
Match: PSBA_JASNU (Photosystem II protein D1 OS=Jasminum nudiflorum GN=psbA PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.400e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105
[Close]
BLAST of Spo18044.1 vs. ExPASy Swiss-Prot
Match: PSBA_VIGUN (Photosystem II protein D1 OS=Vigna unguiculata GN=psbA PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.400e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105
[Close]
BLAST of Spo18044.1 vs. TAIR (Arabidopsis)
Match: ATCG00020.1 (photosystem II reaction center protein A)

HSP 1 Score: 214.5 bits (545), Expect = 3.600e-56
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 106
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEW 105
The following BLAST results are available for this feature:
BLAST of Spo18044.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|112030956|gb|ABH88068.1|1.0e-52100.photosystem II protein D1 (chl... [more]
gi|296033663|gb|ADG84709.1|1.0e-52100.PsbA, partial (plastid) [Diant... [more]
gi|663060354|ref|YP_009046894.1|1.0e-52100.photosystem II protein D1 (chl... [more]
gi|66840809|emb|CAH57473.1|1.0e-52100.PSII 32 kD protein, partial (c... [more]
gi|669216557|gb|AII18210.1|1.0e-52100.photosystem II protein D1, par... [more]
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BLAST of Spo18044.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
D6NHU5_9CARY7.1e-53100.PsbA (Fragment) OS=Dianthus gl... [more]
A0A142DR16_9LAMI7.1e-53100.Photosystem II protein D1 OS=S... [more]
A0A0K1ZAL6_NEPCA7.1e-53100.Photosystem II protein D1 OS=N... [more]
F1KBY7_CARCG7.1e-53100.Photosystem II protein D1 OS=C... [more]
A0A161G3M7_9SOLA7.1e-53100.Photosystem II protein D1 OS=I... [more]
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BLAST of Spo18044.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBA_NASOF6.4e-55100.Photosystem II protein D1 OS=N... [more]
PSBA_MANES6.4e-55100.Photosystem II protein D1 OS=M... [more]
PSBA_LACSA6.4e-55100.Photosystem II protein D1 OS=L... [more]
PSBA_JASNU6.4e-55100.Photosystem II protein D1 OS=J... [more]
PSBA_VIGUN6.4e-55100.Photosystem II protein D1 OS=V... [more]
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BLAST of Spo18044.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
ATCG00020.13.6e-56100.photosystem II reaction center... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000484Photosynthetic reaction centre, L/MGENE3D1.20.85.10coord: 12..99
score: 7.2
IPR000484Photosynthetic reaction centre, L/MPFAMPF00124Photo_RCcoord: 28..98
score: 1.2
IPR000484Photosynthetic reaction centre, L/MunknownSSF81483Bacterial photosystem II reaction centre, L and M subunitscoord: 12..106
score: 1.18
NoneNo IPR availablePANTHERPTHR33149FAMILY NOT NAMEDcoord: 2..105
score: 1.7
NoneNo IPR availablePANTHERPTHR33149:SF6SUBFAMILY NOT NAMEDcoord: 2..105
score: 1.7

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0009635 response to herbicide
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0034968 histone lysine methylation
biological_process GO:0006554 lysine catabolic process
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0015074 DNA integration
biological_process GO:0015979 photosynthesis
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009769 photosynthesis, light harvesting in photosystem II
biological_process GO:0010207 photosystem II assembly
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0009523 photosystem II
cellular_component GO:0005730 nucleolus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0010287 plastoglobule
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0009507 chloroplast
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0030076 light-harvesting complex
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0032549 ribonucleoside binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0010242 oxygen evolving activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0048038 quinone binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045157 electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0003676 nucleic acid binding
RNA-Seq Expression