Spo18171 (gene) | SpinachBase

Overview


Name	Spo18171
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Cytoplasmic tRNA 2-thiolation protein 1
Location	chr4 : 122159102 .. 122163119 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGATGAATTGGGTGTTCAATTATGCCATACCCCACCTCATAACGCAAACAACGATATACTCAAACCACGACGACTATAGAGATTTTAAAAGGTCTACTGAAAGTGAAAAACCTAATAAAAACAACGATGTGGTAACAAAGTATTTTAGGATGCCCCTTCATTATCCGAGGTATACTAAGGAAGATTATTCGAAGATGGAGGAGTGGAAGGTGGATATGCTACTAAAGGAATATGGACTTGAGAATCATATCAAAGGTAGTCTTGAAGAGAAGAGGATGTTTGCTATGGGAGCTTTTTTGTGGCCTGATCAACTTTAATTTCTATTTTTTTTACTCTTTAATTTAGCAATAATATATACAAGTACTATGTACCAACCAACATAAGTTGGTAGAGTTGGTGGGAGTCACAAGTTCGAGCCCCATCAACTGCGATATGCTTGGGAGTGACTCAAACGATGACCTGCGAAGCTGAGCTGGTTTACCTGTGCTAGGTGCTGGTTTAGTTTAGGGTCTATTCTTCTTACCTATTAAAAACAAAAAAAAACCAAGTACTCTGTTGTGTACTAGGTATGTCGAATTTCAATTTCATGTACAGTAGTATGAAGTATAATGAAGTTGTATTTCATGCCATGCATCCTATTGTTTATCTTTTGTTTTAATGAAATTTAGTTCGATTAACTTAATTTTGACAACTTTGACAGTACAAAGAAGTAGGAGGAAACTTTTAAAAAAGAAAAAAATTAAAACAAAATTGAGCTTTGCAAATGAGCCCTTAATTTGATAATTTCTTACTCCGCAGTCCGCACCAAAATTGACAAGTGAACCCTTTCTCGTCTCTCCTCTCTCCTCGTTGGTTTTTTGTTTTGTTTTAGTACCCGGTTCATCCTTAGGGTTAATCCAAATTCGGTGCGAGTTTTGGGTGGATAGGTTTCAGTCCCCTCCCAATTGTGTAGGTTCAGTGGGGCTGAACTTGCCCCCTACGTATGTGTTTGATGGTGGTGAACTATGGACCCGGTCCATGCTATAATTAGCGTGGACCAGGGTGTTTTTGTAAATTAACAATCAGGAATATTTCACGTAACCTAACATACCTCCATTCCCTTCTTTTTCTCCCTTCCCTGCACACCACCCCTTCCATTTTCTCTCTCCTCCCTTTCCCCATGGTTAGTAACTTGTTAGGCTTAATAATAGTAGTTGGGCCATAAAGGTTGGATTATTTAGAAATATCGTATAGGTAGGCTTAATTAAAGAAAATAGGGCAAAGATTGGATTAATAATTACAAATTTTCCTATTTAAAAAAGATATAATTCTAATTCTAGTTAAGCTTCCTTGTAATAAATATATTTATAATTTTAATAAAAATACGGGGTACAAGTATTACCGACAGTTTTCAGTTTTTTCGTTCTGTAAGTTTTTTTTAATTATTTTATTCAAATGAGAAGAAGAGTTTCGAAATAAGGAAAAAAAGAGCAAGACTAAAACCAGACTAAATTTTTATGCACGGGTTCAATTTAAATCATACGGCTAAGCGCGGAAAAGCCACACCCCTAACATCTTCCTTCAATTTTTTTTGGTTTTGTAAGTCTTATGATTTAAATTGATTCATGAACTAAAAAAATAACCTAGTTATAGTAAGATTGATTTTGAAAAAAGACAATTAAATAGGATAAAGACTCCACTTAAGTCTTGGGAAAACTCACACTAATCAGATTAATTTTGAAAACTGACAATAAAAAAGTAAAAATAACTTTTTATGATTTTCATATTTTGTTTATAATCTAGTTATGTAAAAAGCTGAAAATTGAAAAACAAAAAACGATATGAAAGGAGTAGGGGTGTCAAATCGGATCAACGGGTCGGGTTTGGGTCGGACTCATCGGATTCGGGTTGAAACGGATAGGATTGGGACGGATTAATTTGGCTAACGGGTCGGATCGGATCGGATTGAAAACTTAACGGATTGGATCGGATTGAAAACTTAACGGATTGGATCGGATCGGATTTTTTATGCACGGGTTCATATCGGATCGGGTTGTAAACGGGTCGGATTTTAGTCGGGTTGGGTCGGATCGGATCGGATTGGAACATGACGGATTGTTAAAGGATTTATCCGGACTATAACGGGTTCGGATTCATATTGGGTCGGATTAATCGGGTAACGGGCTAACACGGGTCGGATCGGGTTATTGGGTAGCGGGTTGAAATTCGAGCCGGGTACATTTGGTTCCAAATTATATAATTATAATATCGATGACTTAATTAGGAGATGAAAACGATAACTAACTTTTAAAAGTAATAAACATTTAAGATCAGTAATATAAGTTAGTGAGTATATAATATATAACTTAGTTTAATACTACATCCGTTACGGAAAGTTCTTTACGCCTCAAATCTACATCAATTACAAGTTTCATTTGAGTATAGTATATAATTTAAAGGGAGAATGAAGTACAAGTACACCGTATAACTAATAGTCATACACTTAATTGGTAGTGCATCATAATTAATGTTCTCTTATGGGTTCTGAACGATTTGGGTTAAACGGGTTCAGATCGAAGTTGGTTCGGATTAAACGGGTCATGGGTTGAAACGGTTTGAATTAAACAGGTCACGGATTACAAACTGATCGGATTATACAGATTTTCCTCGGGTTCAAACGGATTGGAGCATAAACGGGTTTCGAATCGCTTCGGTTCGGATTAAACGGATTCAGGTTGTCACGGATCAGTCTGTTATCGGATTCAGATCTTAATCGGATCAATATTAACGGGTTGGGTCGGATTCGGGTTGAATATAATCGGACCGGATCGGATTTCGGATCTTAGATTACAGTTCATATTCTAAACGGTCGGACAAACCCATCAGGTTTATTGGGTCGGATTGAGAATTGACACCCTGGAAAGGAACTAACAAAATGTAAGTCTTTTTCTCGTGGCAATTATTTACACCCGGTTACACGTAGTTCTACGTGTAACCAGTTCATTTTATACTTTTAACCCCTCAAAAGCATATTTTTATAGTTTAAAAGCACATATTTACAAATTAAAAGCACTTTTTTACAGTTTTAAAGCACATTATTAAAGATGAAAAACAAAGTTTTGCTGGTAAAAGGAAATGAAAAATATATAAGTATGTGCTTTTAAATCATTAATGTGCTTTTTAAGTACGGAAACTTTTNAATGAAAAATATATAAGTATGTGCTTTTAAATCATTAATGTGCTTTTTAAGTACGGAAACTTTTGTGTAAGACCGCCTTACCGGAAAGACCACTTTAAAATGAATTTTAGTGCTTAACTAATTAGTTTCATTGCTTAACTAATTAGTTTCATTGCTTAACTAATTGATTTTAATGCTTAACTAGTTAGTTCTAGTGCTTAACTAATTGGTTCTAGTGCTTAACTAATTGATTTTAGTGCTTAACTTATATGACACCAAGGTAGTCTTTTGTGTAAGACCGCCTTATAGAAAAGTTTGTATGTAAACGTGCTTTTAAGCCGTAAAAATATATGTTTTTAACCCGGTTACACGTAGAACTACATGTAACCGGAGACCGGGTGTACCTTATAATTTTTGTGTGGTTTGTTCGTCTTACATAAACCAAAGTCGATTTCCCCCCTTTCTTCTCCAAAATAAGAACACTTGAATTCGCTACAGCCGGGGCCTTACACAGTCTATCCACCCTCTTCTCCCCGGCGGCACCGGTAGCCCAGTACTCTGTTTCAGCGTCACGGTATTCAACTCTATCTCTTTCTGTCTCCAAAACTTTTAACCCTTTTGTTTGATTGCAATTTTATCTACTCAATCTTGTACGTCTTTTGAAATTACCAGTACCCTTTTTGTTTCCATTGTAATTTCCTCGTAATAGAACAATCTATGATCTTGTTTCTGTTTTCCGGGTGATAATTTATAGATTCCTGCTTTTCAATTGTTTAATTGTCAAGTTTAATTCTTGTTCCCAGATAACCAAAATAAACCCAAAATTGAAAGTTCCCCAGTTGGGCTTTGTCTAA

mRNA sequence

ATGGCAATGATGAATTGGGTGTTCAATTATGCCATACCCCACCTCATAACGCAAACAACGATATACTCAAACCACGACGACTATAGAGATTTTAAAAGGTCTACTGAAAGTGAAAAACCTAATAAAAACAACGATGTGGTAACAAAGTATTTTAGGATGCCCCTTCATTATCCGAGGTATACTAAGGAAGATTATTCGAAGATGGAGGAGTGGAAGGTGGATATGCTACTAAAGGAATATGGACTTGAGAATCATATCAAAGGTAGTCTTGAAGAGAAGAGGATGTTTGCTATGGGAGCTTTTTTCCGGGGCCTTACACAGTCTATCCACCCTCTTCTCCCCGGCGGCACCGGTAGCCCAGTACTCTGTTTCAGCGTCACGATAACCAAAATAAACCCAAAATTGAAAGTTCCCCAGTTGGGCTTTGTCTAA

Coding sequence (CDS)

ATGGCAATGATGAATTGGGTGTTCAATTATGCCATACCCCACCTCATAACGCAAACAACGATATACTCAAACCACGACGACTATAGAGATTTTAAAAGGTCTACTGAAAGTGAAAAACCTAATAAAAACAACGATGTGGTAACAAAGTATTTTAGGATGCCCCTTCATTATCCGAGGTATACTAAGGAAGATTATTCGAAGATGGAGGAGTGGAAGGTGGATATGCTACTAAAGGAATATGGACTTGAGAATCATATCAAAGGTAGTCTTGAAGAGAAGAGGATGTTTGCTATGGGAGCTTTTTTCCGGGGCCTTACACAGTCTATCCACCCTCTTCTCCCCGGCGGCACCGGTAGCCCAGTACTCTGTTTCAGCGTCACGATAACCAAAATAAACCCAAAATTGAAAGTTCCCCAGTTGGGCTTTGTCTAA

Protein sequence

MAMMNWVFNYAIPHLITQTTIYSNHDDYRDFKRSTESEKPNKNNDVVTKYFRMPLHYPRYTKEDYSKMEEWKVDMLLKEYGLENHIKGSLEEKRMFAMGAFFRGLTQSIHPLLPGGTGSPVLCFSVTITKINPKLKVPQLGFV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo18171.1	Spo18171.1	mRNA

Homology

[Close]

BLAST of Spo18171.1 vs. NCBI nr
Match: gi|870861656|gb|KMT12928.1| (hypothetical protein BVRB_4g090120 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 131.7 bits (330), Expect = 1.000e-27
Identity = 63/99 (63.64%), Postives = 83/99 (83.84%), Query Frame = 1

		  
Query: 4   MNWVFNYAIP-HLITQTTIYSNHDDYRDFKRSTESEKPNKNNDVVTKYFRMPLHYPRYTK 63
           +NWV NY +P +LITQTT Y NH+  +D+K+S E+E PN  N+V+   FR+PLHYPRYTK
Sbjct: 3   LNWVSNYTLPCYLITQTTTYPNHN-LKDYKKS-ETENPNTKNNVLMDDFRVPLHYPRYTK 62

Query: 64  EDYSKMEEWKVDMLLKEYGLENHIKGSLEEKRMFAMGAF 102
           EDY+KMEEWK+DMLL +YGL++H++G+L+EKR FAMGAF
Sbjct: 63  EDYAKMEEWKLDMLLGQYGLDHHVEGNLDEKRKFAMGAF 99

[Close]

BLAST of Spo18171.1 vs. NCBI nr
Match: gi|870861658|gb|KMT12930.1| (hypothetical protein BVRB_4g090140 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 101.7 bits (252), Expect = 1.100e-18
Identity = 54/101 (53.47%), Postives = 67/101 (66.34%), Query Frame = 1

		  
Query: 4   MNWVFNYAIPHLITQTTIYSNHDDYRDFKRSTESEKPN---KNNDVVTKYFRMPLHYPRY 63
           + W FN A  H +        H   ++ K+    +K N   K N V T  F+MPLHYPRY
Sbjct: 3   LKWFFNSAFTHTLV-------HTPDQNIKQHQTIQKVNLQAKQNGVST--FQMPLHYPRY 62

Query: 64  TKEDYSKMEEWKVDMLLKEYGLENHIKGSLEEKRMFAMGAF 102
           TK +Y KMEEWKVDMLLK+YGL++H+KGSL+EKR FAMGAF
Sbjct: 63  TKAEYEKMEEWKVDMLLKQYGLDHHVKGSLDEKRKFAMGAF 94

[Close]

BLAST of Spo18171.1 vs. NCBI nr
Match: gi|1009107321|ref|XP_015879134.1| (PREDICTED: uncharacterized protein LOC107415338 [Ziziphus jujuba])

HSP 1 Score: 93.6 bits (231), Expect = 3.000e-16
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 1

		  
Query: 17  TQTTIYSNHDDYRDFKRSTESEKPNKNNDVVTKYFRMPLHYPRYTKEDYSKMEEWKVDML 76
           T + I+    D +  K ST +    KNN    + F+MPLHYPRYTK DY KMEEWKVDML
Sbjct: 22  TVSQIHHADGDLKSLKVSTSNGVAVKNNINHDEQFQMPLHYPRYTKADYEKMEEWKVDML 81

Query: 77  LKEYGLENHIKGSLEEKRMFAMGAF 102
           LK+YG+ N I+GSL+EKR FAMGAF
Sbjct: 82  LKQYGIAN-IQGSLDEKRAFAMGAF 105

[Close]

BLAST of Spo18171.1 vs. NCBI nr
Match: gi|357447993|ref|XP_003594272.1| (hypothetical protein MTR_2g026420 [Medicago truncatula])

HSP 1 Score: 84.7 bits (208), Expect = 1.400e-13
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1

		  
Query: 51  FRMPLHYPRYTKEDYSKMEEWKVDMLLKEYGLENHIKGSLEEKRMFAMGAF 102
           F+MPLHYPRYTK DY KMEEWKV++LLKEYGL    KGSL+EKR FAMGAF
Sbjct: 54  FQMPLHYPRYTKVDYEKMEEWKVELLLKEYGLS--FKGSLDEKRSFAMGAF 102

[Close]

BLAST of Spo18171.1 vs. NCBI nr
Match: gi|1000957640|ref|XP_015577098.1| (PREDICTED: uncharacterized protein LOC8282528 [Ricinus communis])

HSP 1 Score: 84.3 bits (207), Expect = 1.800e-13
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 1

		  
Query: 51  FRMPLHYPRYTKEDYSKMEEWKVDMLLKEYGLENHIKGSLEEKRMFAMGAF 102
           F++PLHYPRYTK DY KMEEW+VDMLL+EYGL   IKG+LEEKR FAMG F
Sbjct: 63  FQLPLHYPRYTKTDYQKMEEWRVDMLLREYGLS--IKGTLEEKRAFAMGTF 111

[Close]

BLAST of Spo18171.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CLK2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g090120 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.000e-28
Identity = 63/99 (63.64%), Postives = 83/99 (83.84%), Query Frame = 1

		  
Query: 4   MNWVFNYAIP-HLITQTTIYSNHDDYRDFKRSTESEKPNKNNDVVTKYFRMPLHYPRYTK 63
           +NWV NY +P +LITQTT Y NH+  +D+K+S E+E PN  N+V+   FR+PLHYPRYTK
Sbjct: 3   LNWVSNYTLPCYLITQTTTYPNHN-LKDYKKS-ETENPNTKNNVLMDDFRVPLHYPRYTK 62

Query: 64  EDYSKMEEWKVDMLLKEYGLENHIKGSLEEKRMFAMGAF 102
           EDY+KMEEWK+DMLL +YGL++H++G+L+EKR FAMGAF
Sbjct: 63  EDYAKMEEWKLDMLLGQYGLDHHVEGNLDEKRKFAMGAF 99

[Close]

BLAST of Spo18171.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CGQ1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g090140 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.700e-19
Identity = 54/101 (53.47%), Postives = 67/101 (66.34%), Query Frame = 1

		  
Query: 4   MNWVFNYAIPHLITQTTIYSNHDDYRDFKRSTESEKPN---KNNDVVTKYFRMPLHYPRY 63
           + W FN A  H +        H   ++ K+    +K N   K N V T  F+MPLHYPRY
Sbjct: 3   LKWFFNSAFTHTLV-------HTPDQNIKQHQTIQKVNLQAKQNGVST--FQMPLHYPRY 62

Query: 64  TKEDYSKMEEWKVDMLLKEYGLENHIKGSLEEKRMFAMGAF 102
           TK +Y KMEEWKVDMLLK+YGL++H+KGSL+EKR FAMGAF
Sbjct: 63  TKAEYEKMEEWKVDMLLKQYGLDHHVKGSLDEKRKFAMGAF 94

[Close]

BLAST of Spo18171.1 vs. UniProtKB/TrEMBL
Match: F6HCW0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00180 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.400e-14
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 1

		  
Query: 44  NDVVTKY---FRMPLHYPRYTKEDYSKMEEWKVDMLLKEYGLENHIKGSLEEKRMFAMGA 102
           +DVV K    F+MPLHYPRYTK DY KMEEWKVDMLL+EYGL    KG+LEEKR +AMGA
Sbjct: 45  DDVVEKCISGFQMPLHYPRYTKADYGKMEEWKVDMLLREYGLT--FKGTLEEKRAYAMGA 103

[Close]

BLAST of Spo18171.1 vs. UniProtKB/TrEMBL
Match: G7IPB3_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g026420 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.800e-14
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1

		  
Query: 51  FRMPLHYPRYTKEDYSKMEEWKVDMLLKEYGLENHIKGSLEEKRMFAMGAF 102
           F+MPLHYPRYTK DY KMEEWKV++LLKEYGL    KGSL+EKR FAMGAF
Sbjct: 54  FQMPLHYPRYTKVDYEKMEEWKVELLLKEYGLS--FKGSLDEKRSFAMGAF 102

[Close]

BLAST of Spo18171.1 vs. UniProtKB/TrEMBL
Match: B9SA77_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0863040 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.300e-13
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 1

		  
Query: 51  FRMPLHYPRYTKEDYSKMEEWKVDMLLKEYGLENHIKGSLEEKRMFAMGAF 102
           F++PLHYPRYTK DY KMEEW+VDMLL+EYGL   IKG+LEEKR FAMG F
Sbjct: 63  FQLPLHYPRYTKTDYQKMEEWRVDMLLREYGLS--IKGTLEEKRAFAMGTF 111

[Close]

BLAST of Spo18171.1 vs. TAIR (Arabidopsis)
Match: AT3G09950.1 (unknown protein)

HSP 1 Score: 71.6 bits (174), Expect = 4.300e-13
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 1

		  
Query: 32  KRSTESEKPNKNNDVV--TKYFRMPLHYPRYTKEDYSKMEEWKVDMLLKEYGLENHIKGS 91
           K     E  +KN  V   +  F+MPLHYPRYTKEDY +MEEW++D+LL EYGL      +
Sbjct: 15  KNQESVENLDKNGAVKAPSSGFKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNT 74

Query: 92  LEEKRMFAMGAF 102
           L EKR FA+  F
Sbjct: 75  LHEKRAFAIDTF 86

[Close]

BLAST of Spo18171.1 vs. TAIR (Arabidopsis)
Match: AT5G41761.1 (unknown protein)

HSP 1 Score: 70.9 bits (172), Expect = 7.400e-13
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 1

		  
Query: 17  TQTTIYS-NHDDYRDFKRSTESEKPNKNNDVVTKYFRMPLHYPRYTKEDYSKMEEWKVDM 76
           + TTI++ +H D  D +  T ++  +      +  F++PLHYP+YTK DY KM EW++D 
Sbjct: 10  SNTTIHNRSHQDGEDQRNETATKINHDKPQNQSSSFQIPLHYPKYTKSDYEKMPEWQLDR 69

Query: 77  LLKEYGLENHIKGSLEEKRMFAMGAF 102
           LL+EYGL   + G   EKR FA+GAF
Sbjct: 70  LLREYGLP--VIGDSYEKRKFAIGAF 93

[Close]

BLAST of Spo18171.1 vs. TAIR (Arabidopsis)
Match: AT3G55570.1 (unknown protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.200e-12
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1

		  
Query: 51  FRMPLHYPRYTKEDYSKMEEWKVDMLLKEYGLENHIKGSLEEKRMFAMGAF 102
           FRMPLHYPRY+KEDY  M EWK+D +L +YGL  +  G L  KR FA+GAF
Sbjct: 32  FRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTY--GDLAHKRDFAIGAF 80

[Close]

BLAST of Spo18171.1 vs. TAIR (Arabidopsis)
Match: AT5G55620.1 (unknown protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.200e-10
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 1

		  
Query: 17  TQTTIYSNHDDYRDFKRSTESE--KPNKNNDVVTKYFRMPLHYPRYTKEDYSKMEEWKVD 76
           TQ   YSNH D     +ST ++  K  K  +  +  F++PLHYP+Y+K DY  M++ ++D
Sbjct: 12  TQMFGYSNHMDQASNCQSTRNKIIKMMKKEEFPSG-FQVPLHYPKYSKSDYEVMDDLRLD 71

Query: 77  MLLKEYGLENHIKGSLEEKRMFAMGAF 102
           +LLK+YG     +GSLE+KR+FA+ +F
Sbjct: 72  LLLKQYGFS--FEGSLEDKRVFAIESF 95

[Close]

BLAST of Spo18171.1 vs. TAIR (Arabidopsis)
Match: AT3G11405.1 (unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 7.200e-8
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 1

		  
Query: 32  KRSTESEKPNKNNDVVTKY-------FRMPLHYPRYTKEDYSKMEEWKVDMLLKEYGLEN 91
           K+++ S   N+++   + +       F+MPL YP Y KE Y  M E ++D LLK YGL  
Sbjct: 31  KKTSNSSSDNESDQFASLFGSSSPSSFQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPT 90

Query: 92  HIKGSLEEKRMFAMGAFF--RGLTQSI 110
            I G+L  K+ FA+GAF    GL  S+
Sbjct: 91  DI-GNLSCKKEFAVGAFLWETGLNSSL 116

The following BLAST results are available for this feature:

BLAST of Spo18171.1 vs. NCBI nr
BLAST of Spo18171.1 vs. UniProtKB/TrEMBL
BLAST of Spo18171.1 vs. ExPASy Swiss-Prot
BLAST of Spo18171.1 vs. TAIR (Arabidopsis)

BLAST of Spo18171.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|870861656\|gb\|KMT12928.1\|	1.0e-27	63.6	hypothetical protein BVRB_4g09...	[more]
gi\|870861658\|gb\|KMT12930.1\|	1.1e-18	53.4	hypothetical protein BVRB_4g09...	[more]
gi\|1009107321\|ref\|XP_015879134.1\|	3.0e-16	58.8	PREDICTED: uncharacterized pro...	[more]
gi\|357447993\|ref\|XP_003594272.1\|	1.4e-13	78.4	hypothetical protein MTR_2g026...	[more]
gi\|1000957640\|ref\|XP_015577098.1\|	1.8e-13	76.4	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo18171.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0J8CLK2_BETVU	7.0e-28	63.6	Uncharacterized protein OS=Bet...	[more]
A0A0J8CGQ1_BETVU	7.7e-19	53.4	Uncharacterized protein OS=Bet...	[more]
F6HCW0_VITVI	4.4e-14	72.1	Putative uncharacterized prote...	[more]
G7IPB3_MEDTR	9.8e-14	78.4	Uncharacterized protein OS=Med...	[more]
B9SA77_RICCO	1.3e-13	76.4	Putative uncharacterized prote...	[more]

BLAST of Spo18171.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

BLAST of Spo18171.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
AT3G09950.1	4.3e-13	51.3	unknown protein	[more]
AT5G41761.1	7.4e-13	44.1	unknown protein	[more]
AT3G55570.1	2.2e-12	62.7	unknown protein	[more]
AT5G55620.1	1.2e-10	42.5	unknown protein	[more]
AT3G11405.1	7.2e-8	39.0	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33513	FAMILY NOT NAMED	coord: 16..101 score: 3.5
None	No IPR available	PANTHER	PTHR33513:SF2	SUBFAMILY NOT NAMED	coord: 16..101 score: 3.5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0006591	ornithine metabolic process
biological_process	GO:0048481	plant ovule development
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0006164	purine nucleotide biosynthetic process
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0006168	adenine salvage
biological_process	GO:0009116	nucleoside metabolic process
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0019497	hexachlorocyclohexane metabolic process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0010206	photosystem II repair
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0006771	riboflavin metabolic process
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006526	arginine biosynthetic process
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0010114	response to red light
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0042255	ribosome assembly
biological_process	GO:0050896	response to stimulus
biological_process	GO:0010218	response to far red light
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0080005	photosystem stoichiometry adjustment
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009637	response to blue light
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009657	plastid organization
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV
cellular_component	GO:0005746	mitochondrial respiratory chain
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0031977	thylakoid lumen
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0044425	membrane part
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0008287	protein serine/threonine phosphatase complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0009348	ornithine carbamoyltransferase complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0004585	ornithine carbamoyltransferase activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016597	amino acid binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0004129	cytochrome-c oxidase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016746	transferase activity, transferring acyl groups
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0010181	FMN binding
molecular_function	GO:0003999	adenine phosphoribosyltransferase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0003993	acid phosphatase activity
molecular_function	GO:0016491	oxidoreductase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo14678	0.78	Barchart \| Table
Spo21383	0.78	Barchart \| Table
Spo20521	0.76	Barchart \| Table
Spo16213	0.76	Barchart \| Table
Spo10235	0.75	Barchart \| Table
Spo02573	0.73	Barchart \| Table
Spo14416	0.72	Barchart \| Table
Spo18502	0.72	Barchart \| Table
Spo00225	0.71	Barchart \| Table
Spo09202	0.71	Barchart \| Table
Spo10404	0.71	Barchart \| Table
Spo16805	0.71	Barchart \| Table
Spo26117	0.71	Barchart \| Table
Spo04653	0.70	Barchart \| Table
Spo06505	0.70	Barchart \| Table
Spo02932	0.69	Barchart \| Table
Spo24046	0.69	Barchart \| Table
Spo10285	0.69	Barchart \| Table
Spo04383	0.69	Barchart \| Table
Spo13029	0.68	Barchart \| Table
Spo05073	0.68	Barchart \| Table
Spo27081	0.68	Barchart \| Table
Spo28058	0.68	Barchart \| Table
Spo21215	0.68	Barchart \| Table
Spo06293	0.67	Barchart \| Table
Spo11317	0.67	Barchart \| Table
Spo28324	0.67	Barchart \| Table
Spo03390	0.67	Barchart \| Table
Spo21155	0.67	Barchart \| Table
Spo22261	0.67	Barchart \| Table
Spo24857	0.67	Barchart \| Table
Spo25159	0.67	Barchart \| Table
Spo28451	0.67	Barchart \| Table
Spo09554	0.67	Barchart \| Table
Spo12302	0.66	Barchart \| Table
Spo25817	0.66	Barchart \| Table
Spo12122	0.66	Barchart \| Table
Spo02513	0.66	Barchart \| Table
Spo12029	0.66	Barchart \| Table
Spo23112	0.66	Barchart \| Table
Spo17250	0.66	Barchart \| Table
Spo26045	0.65	Barchart \| Table