Spo18185 (gene)

Overview
NameSpo18185
Typegene
OrganismSpinacia oleracea (Spinach)
Description6.7 kDa chloroplast outer envelope membrane protein (E 6.7)
Locationchr4 : 122326515 .. 122326703 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGCGTAGCGAAGCCGGCGACGACGAAGGAGGGATCCGCGAAGCAAGCAGCCATTGTGGTGGGTGTGCTTGCTTTAGGGTGGTTTGCCATCCAGGTTGCTTTTATACCTTTGTTCAACAAGGTTCGAGGTGGCGGTTCCGACAAAAAGGACGATGATGTCAACGCCTTTACACCGGATACTTAA

mRNA sequence

ATGGAGAGCGTAGCGAAGCCGGCGACGACGAAGGAGGGATCCGCGAAGCAAGCAGCCATTGTGGTGGGTGTGCTTGCTTTAGGGTGGTTTGCCATCCAGGTTGCTTTTATACCTTTGTTCAACAAGGTTCGAGGTGGCGGTTCCGACAAAAAGGACGATGATGTCAACGCCTTTACACCGGATACTTAA

Coding sequence (CDS)

ATGGAGAGCGTAGCGAAGCCGGCGACGACGAAGGAGGGATCCGCGAAGCAAGCAGCCATTGTGGTGGGTGTGCTTGCTTTAGGGTGGTTTGCCATCCAGGTTGCTTTTATACCTTTGTTCAACAAGGTTCGAGGTGGCGGTTCCGACAAAAAGGACGATGATGTCAACGCCTTTACACCGGATACTTAA

Protein sequence

MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTPDT
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo18185.1Spo18185.1mRNA


Homology
[Close]
BLAST of Spo18185.1 vs. NCBI nr
Match: gi|129073|sp|P19407.1|OEC6_SPIOL (RecName: Full=6.7 kDa chloroplast outer envelope membrane protein; AltName: Full=E 6.7 [Spinacia oleracea])

HSP 1 Score: 123.6 bits (309), Expect = 1.200e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

		  

Query: 1  MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP 60
          MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP
Sbjct: 1  MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62
[Close]
BLAST of Spo18185.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWD8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_020720 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.200e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

		  

Query: 1  MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP 60
          MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP
Sbjct: 1  MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62
[Close]
BLAST of Spo18185.1 vs. ExPASy Swiss-Prot
Match: OEC6_SPIOL (6.7 kDa chloroplast outer envelope membrane protein OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 7.400e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

		  

Query: 1  MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP 60
          MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP
Sbjct: 1  MESVAKPATTKEGSAKQAAIVVGVLALGWFAIQVAFIPLFNKVRGGGSDKKDDDVNAFTP 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62
The following BLAST results are available for this feature:
BLAST of Spo18185.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|129073|sp|P19407.1|OEC6_SPIOL1.2e-25100.RecName: Full=6.7 kDa chloropl... [more]
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BLAST of Spo18185.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RWD8_SPIOL8.2e-26100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo18185.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
OEC6_SPIOL7.4e-28100.6.7 kDa chloroplast outer enve... [more]
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BLAST of Spo18185.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010218 response to far red light
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0051186 cofactor metabolic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0010207 photosystem II assembly
biological_process GO:0042793 plastid transcription
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010304 PSII associated light-harvesting complex II catabolic process
biological_process GO:0009637 response to blue light
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0016043 cellular component organization
biological_process GO:0010114 response to red light
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0044085 cellular component biogenesis
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0042545 cell wall modification
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0001510 RNA methylation
biological_process GO:0009058 biosynthetic process
biological_process GO:0006457 protein folding
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0019682 glyceraldehyde-3-phosphate metabolic process
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:1901564 organonitrogen compound metabolic process
biological_process GO:0009768 photosynthesis, light harvesting in photosystem I
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0010155 regulation of proton transport
biological_process GO:0009644 response to high light intensity
biological_process GO:0009744 response to sucrose
biological_process GO:0006364 rRNA processing
biological_process GO:0006771 riboflavin metabolic process
biological_process GO:0019497 hexachlorocyclohexane metabolic process
biological_process GO:0016311 dephosphorylation
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006506 GPI anchor biosynthetic process
biological_process GO:0006414 translational elongation
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0044281 small molecule metabolic process
biological_process GO:0009639 response to red or far red light
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0008152 metabolic process
cellular_component GO:0005840 ribosome
cellular_component GO:0034357 photosynthetic membrane
cellular_component GO:0044425 membrane part
cellular_component GO:0005737 cytoplasm
cellular_component GO:0009707 chloroplast outer membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0010287 plastoglobule
cellular_component GO:0009523 photosystem II
cellular_component GO:0009507 chloroplast
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0016020 membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0005622 intracellular
cellular_component GO:0009533 chloroplast stromal thylakoid
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0005618 cell wall
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0009506 plasmodesma
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005730 nucleolus
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0031177 phosphopantetheine binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016772 transferase activity, transferring phosphorus-containing groups
molecular_function GO:0005524 ATP binding
molecular_function GO:0003993 acid phosphatase activity
RNA-Seq Expression