Spo18209 (gene)

Overview
NameSpo18209
Typegene
OrganismSpinacia oleracea (Spinach)
Description50S ribosomal protein L12-1, chloroplastic
Locationchr4 : 122841305 .. 122841874 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAACTACAACAATGGCAACCCTCAACCTCCCTTCTCTCACCTCCCACCCAAACTCCTCCACTTTCCCAAAACACCCTCAACCTCTGCAATTCCCTTTCCGTACCACCACAAACCCTATTTCCCTCTCTTCCACTCGCACCACCCGTCTCCGCCCTATCGCCGCTGTCGAAGCCCCGGAGAAAATCGAACAACTCGGAACTCAGCTCTCCGGCCTCACCCTTGAGGAAGCTAGGGTCCTCGTAGACTGGCTTCAAGACAAGCTAGGAGTCTCCGCGGCGTCGTTTGCTCCCGCTGCCGCTGTTGCTGCCCCTGGCGCTCCTGCCGACGCCGCACCCGCTGTTGAAGAGAAGACGGAGTTTGATGTCTCAATTGATGAAGTACCCAGCAATGCAAGGATTTCAGTGATTAAGGCTGTTAGGGCATTGACTAGCCTGGGGCTGAAAGAGGCGAAAGAATTGATTGAGGGTTTGCCTAAGAAATTGAAGGAAGGTGTTTCTAAGGATGATGCTGAAGATGCTAAGAAGCAGCTTGAAGATGCTGGTGCTAAGGTTTCCATTGTTTAA

mRNA sequence

ATGGCAGCAACTACAACAATGGCAACCCTCAACCTCCCTTCTCTCACCTCCCACCCAAACTCCTCCACTTTCCCAAAACACCCTCAACCTCTGCAATTCCCTTTCCGTACCACCACAAACCCTATTTCCCTCTCTTCCACTCGCACCACCCGTCTCCGCCCTATCGCCGCTGTCGAAGCCCCGGAGAAAATCGAACAACTCGGAACTCAGCTCTCCGGCCTCACCCTTGAGGAAGCTAGGGTCCTCGTAGACTGGCTTCAAGACAAGCTAGGAGTCTCCGCGGCGTCGTTTGCTCCCGCTGCCGCTGTTGCTGCCCCTGGCGCTCCTGCCGACGCCGCACCCGCTGTTGAAGAGAAGACGGAGTTTGATGTCTCAATTGATGAAGTACCCAGCAATGCAAGGATTTCAGTGATTAAGGCTGTTAGGGCATTGACTAGCCTGGGGCTGAAAGAGGCGAAAGAATTGATTGAGGGTTTGCCTAAGAAATTGAAGGAAGGTGTTTCTAAGGATGATGCTGAAGATGCTAAGAAGCAGCTTGAAGATGCTGGTGCTAAGGTTTCCATTGTTTAA

Coding sequence (CDS)

ATGGCAGCAACTACAACAATGGCAACCCTCAACCTCCCTTCTCTCACCTCCCACCCAAACTCCTCCACTTTCCCAAAACACCCTCAACCTCTGCAATTCCCTTTCCGTACCACCACAAACCCTATTTCCCTCTCTTCCACTCGCACCACCCGTCTCCGCCCTATCGCCGCTGTCGAAGCCCCGGAGAAAATCGAACAACTCGGAACTCAGCTCTCCGGCCTCACCCTTGAGGAAGCTAGGGTCCTCGTAGACTGGCTTCAAGACAAGCTAGGAGTCTCCGCGGCGTCGTTTGCTCCCGCTGCCGCTGTTGCTGCCCCTGGCGCTCCTGCCGACGCCGCACCCGCTGTTGAAGAGAAGACGGAGTTTGATGTCTCAATTGATGAAGTACCCAGCAATGCAAGGATTTCAGTGATTAAGGCTGTTAGGGCATTGACTAGCCTGGGGCTGAAAGAGGCGAAAGAATTGATTGAGGGTTTGCCTAAGAAATTGAAGGAAGGTGTTTCTAAGGATGATGCTGAAGATGCTAAGAAGCAGCTTGAAGATGCTGGTGCTAAGGTTTCCATTGTTTAA

Protein sequence

MAATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLEDAGAKVSIV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo18209.1Spo18209.1mRNA


Homology
[Close]
BLAST of Spo18209.1 vs. NCBI nr
Match: gi|133085|sp|P02398.2|RK12_SPIOL (RecName: Full=50S ribosomal protein L12, chloroplastic; AltName: Full=CL12; Flags: Precursor)

HSP 1 Score: 343.6 bits (880), Expect = 2.200e-91
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 

		  

Query: 1   MAATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEA 60
           MAATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEA
Sbjct: 1   MAATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEA 60

Query: 61  PEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEEKT 120
           PEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEEKT
Sbjct: 61  PEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEEKT 120

Query: 121 EFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLE 180
           EFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLE
Sbjct: 121 EFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLE 180

Query: 181 DAGAKVSIV 190
           DAGAKVSIV
Sbjct: 181 DAGAKVSIV 189
[Close]
BLAST of Spo18209.1 vs. NCBI nr
Match: gi|731364043|ref|XP_010693759.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 298.9 bits (764), Expect = 6.300e-78
Identity = 169/188 (89.89%), Postives = 176/188 (93.62%), Query Frame = 1 

		  

Query: 3   ATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEAPE 62
           AT T++TLNLPSL+SH   STFPK PQPLQFPFR   NP+SLSSTRTTRLRPI+AVEAPE
Sbjct: 2   ATATLSTLNLPSLSSHSTPSTFPKIPQPLQFPFRNN-NPLSLSSTRTTRLRPISAVEAPE 61

Query: 63  KIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAP-ADAAPAVEEKTE 122
           KIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAA VAAPGAP ADAAP VEEKTE
Sbjct: 62  KIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAVVAAPGAPGADAAPVVEEKTE 121

Query: 123 FDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLED 182
           FDVSIDEVPSNARI+VIKAVR LTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLE+
Sbjct: 122 FDVSIDEVPSNARIAVIKAVRVLTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLEE 181

Query: 183 AGAKVSIV 190
           AGAKVSIV
Sbjct: 182 AGAKVSIV 188
[Close]
BLAST of Spo18209.1 vs. NCBI nr
Match: gi|223560|prf||0812296A (protein,chloroplast ribosomal)

HSP 1 Score: 224.2 bits (570), Expect = 2.000e-55
Identity = 127/130 (97.69%), Postives = 127/130 (97.69%), Query Frame = 1 

		  

Query: 57  AVEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAV 116
           AVEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPAD   AV
Sbjct: 1   AVEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPAD---AV 60

Query: 117 EEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAK 176
           EEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAK
Sbjct: 61  EEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAK 120

Query: 177 KQLEDAGAKV 187
           KQLEDAGAKV
Sbjct: 121 KQLEDAGAKV 127
[Close]
BLAST of Spo18209.1 vs. NCBI nr
Match: gi|729305416|ref|XP_010528249.1| (PREDICTED: 50S ribosomal protein L12-3, chloroplastic-like [Tarenaya hassleriana])

HSP 1 Score: 216.9 bits (551), Expect = 3.100e-53
Identity = 138/197 (70.05%), Postives = 159/197 (80.71%), Query Frame = 1 

		  

Query: 1   MAAT-TTMATLNLPSLTSHPNSSTFPKH-----PQPLQFPFRTTTNPISLSSTRTTRLRP 60
           MAAT +T +T+   S  S P++S +P H     P  ++FPFR    P+  SS R   LRP
Sbjct: 1   MAATLSTSSTIRASSYPSPPSAS-YPTHFFLSRPNSVEFPFR----PLGGSSHRANHLRP 60

Query: 61  IAAVEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAV-AAPGAP--AD 120
           +AAVEAPEKIE+LGT++S LTLEEARVLVD+LQDKLGVSAA+FAPAAAV AAPGA     
Sbjct: 61  VAAVEAPEKIEKLGTEISSLTLEEARVLVDYLQDKLGVSAAAFAPAAAVVAAPGAADGGG 120

Query: 121 AAPAVEEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDD 180
           AA AVEEKTEFDV IDEVPS+ARI+VIKAVRALTSL LKEAK+LIEGLPKK KEGVSKD+
Sbjct: 121 AAAAVEEKTEFDVVIDEVPSSARIAVIKAVRALTSLALKEAKDLIEGLPKKFKEGVSKDE 180

Query: 181 AEDAKKQLEDAGAKVSI 189
           AE+AKKQLE+AGAKVSI
Sbjct: 181 AEEAKKQLEEAGAKVSI 192
[Close]
BLAST of Spo18209.1 vs. NCBI nr
Match: gi|225452430|ref|XP_002277258.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic [Vitis vinifera])

HSP 1 Score: 216.5 bits (550), Expect = 4.100e-53
Identity = 132/191 (69.11%), Postives = 152/191 (79.58%), Query Frame = 1 

		  

Query: 1   MAATTTMATLNLPSLTSHPNSSTFPKHP--QPLQFPFRTTTNPISLSSTRTTRLRPIAAV 60
           MAA+ +  TL  PS  +   SS+FP H   Q L FPFR   NP  +   R T +RPI+AV
Sbjct: 1   MAASLSTLTLRSPSCPTL--SSSFPTHSFKQTLDFPFR---NPKIIH--RATFVRPISAV 60

Query: 61  EAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEE 120
            APEKIE++GT+LS LTLEEAR+LVDWLQDKLGVSAA+FAPAA   APGA ADA   VEE
Sbjct: 61  AAPEKIEKIGTELSNLTLEEARILVDWLQDKLGVSAAAFAPAAVAVAPGAVADAPAVVEE 120

Query: 121 KTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQ 180
           KTEFDV I++VPSNARI+ IKAVRALTSL LKEAKELIEGLPKK KEGVSK++AE+AKKQ
Sbjct: 121 KTEFDVMIEDVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEEAKKQ 180

Query: 181 LEDAGAKVSIV 190
           LE+AGAKV+IV
Sbjct: 181 LEEAGAKVAIV 184
[Close]
BLAST of Spo18209.1 vs. UniProtKB/TrEMBL
Match: Q53WU1_SPIOL (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea GN=Soc rpl12 PE=2 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 1.500e-91
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 

		  

Query: 1   MAATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEA 60
           MAATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEA
Sbjct: 1   MAATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEA 60

Query: 61  PEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEEKT 120
           PEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEEKT
Sbjct: 61  PEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEEKT 120

Query: 121 EFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLE 180
           EFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLE
Sbjct: 121 EFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLE 180

Query: 181 DAGAKVSIV 190
           DAGAKVSIV
Sbjct: 181 DAGAKVSIV 189
[Close]
BLAST of Spo18209.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BD62_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g068170 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 4.400e-78
Identity = 169/188 (89.89%), Postives = 176/188 (93.62%), Query Frame = 1 

		  

Query: 3   ATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEAPE 62
           AT T++TLNLPSL+SH   STFPK PQPLQFPFR   NP+SLSSTRTTRLRPI+AVEAPE
Sbjct: 2   ATATLSTLNLPSLSSHSTPSTFPKIPQPLQFPFRNN-NPLSLSSTRTTRLRPISAVEAPE 61

Query: 63  KIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAP-ADAAPAVEEKTE 122
           KIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAA VAAPGAP ADAAP VEEKTE
Sbjct: 62  KIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAVVAAPGAPGADAAPVVEEKTE 121

Query: 123 FDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLED 182
           FDVSIDEVPSNARI+VIKAVR LTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLE+
Sbjct: 122 FDVSIDEVPSNARIAVIKAVRVLTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLEE 181

Query: 183 AGAKVSIV 190
           AGAKVSIV
Sbjct: 182 AGAKVSIV 188
[Close]
BLAST of Spo18209.1 vs. UniProtKB/TrEMBL
Match: F6HUY7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g01110 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.800e-53
Identity = 132/191 (69.11%), Postives = 152/191 (79.58%), Query Frame = 1 

		  

Query: 1   MAATTTMATLNLPSLTSHPNSSTFPKHP--QPLQFPFRTTTNPISLSSTRTTRLRPIAAV 60
           MAA+ +  TL  PS  +   SS+FP H   Q L FPFR   NP  +   R T +RPI+AV
Sbjct: 1   MAASLSTLTLRSPSCPTL--SSSFPTHSFKQTLDFPFR---NPKIIH--RATFVRPISAV 60

Query: 61  EAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEE 120
            APEKIE++GT+LS LTLEEAR+LVDWLQDKLGVSAA+FAPAA   APGA ADA   VEE
Sbjct: 61  AAPEKIEKIGTELSNLTLEEARILVDWLQDKLGVSAAAFAPAAVAVAPGAVADAPAVVEE 120

Query: 121 KTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQ 180
           KTEFDV I++VPSNARI+ IKAVRALTSL LKEAKELIEGLPKK KEGVSK++AE+AKKQ
Sbjct: 121 KTEFDVMIEDVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEEAKKQ 180

Query: 181 LEDAGAKVSIV 190
           LE+AGAKV+IV
Sbjct: 181 LEEAGAKVAIV 184
[Close]
BLAST of Spo18209.1 vs. UniProtKB/TrEMBL
Match: A0A067L3E5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23894 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.100e-52
Identity = 130/188 (69.15%), Postives = 155/188 (82.45%), Query Frame = 1 

		  

Query: 2   AATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEAP 61
           A+ ++  TL L S +S+P  +T  +    ++FPFR+     +L+  R+T LRPIAAV AP
Sbjct: 3   ASLSSTRTLTLSSPSSYPTLTTTKQFF--VEFPFRSNFASSTLTH-RSTHLRPIAAVSAP 62

Query: 62  EKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAP-AVEEKT 121
           EKIE+LGT++S LTLEEAR LVD+LQDKLGVSAA+FAPAA VAAPGA AD  P AVEEKT
Sbjct: 63  EKIEKLGTEISSLTLEEARTLVDYLQDKLGVSAAAFAPAAVVAAPGAAADTGPAAVEEKT 122

Query: 122 EFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLE 181
           EFDV I+EVPSNARI+VIKAVRALTSL LKEAK+LIEGLPKK KEGVSK++AE+AKKQLE
Sbjct: 123 EFDVVINEVPSNARIAVIKAVRALTSLALKEAKDLIEGLPKKFKEGVSKEEAEEAKKQLE 182

Query: 182 DAGAKVSI 189
           +AGAKVSI
Sbjct: 183 EAGAKVSI 187
[Close]
BLAST of Spo18209.1 vs. UniProtKB/TrEMBL
Match: M5XA31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011994mg PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 9.200e-52
Identity = 129/192 (67.19%), Postives = 152/192 (79.17%), Query Frame = 1 

		  

Query: 1   MAATTTMATLNLPSLTSHPNSSTFPKHPQP--LQFPFRTTTNPISLSST-RTTRLRPIAA 60
           MAA+ +  TL  PS  + P +S+FP +     LQFPF    NP + S T R T LRP+AA
Sbjct: 1   MAASLSTLTLGTPSYLNTPATSSFPPNTPKTTLQFPF----NPQNPSLTHRATHLRPLAA 60

Query: 61  VEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVE 120
           VEAPEKIE+LG  +S LTLEEAR+LVD+LQDKLGVSAA+ APAAAVAA    A+    VE
Sbjct: 61  VEAPEKIEKLGADISSLTLEEARILVDFLQDKLGVSAAALAPAAAVAAAPGAAEGPAVVE 120

Query: 121 EKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKK 180
           EKTEFDV I+EVPSNARI+VIKAVRALTSL LKEAKELIEGLPKK +EG+SKD+A++AKK
Sbjct: 121 EKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFREGISKDEADEAKK 180

Query: 181 QLEDAGAKVSIV 190
           QLE+AGAKV+IV
Sbjct: 181 QLEEAGAKVAIV 188
[Close]
BLAST of Spo18209.1 vs. ExPASy Swiss-Prot
Match: RK12_SPIOL (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea GN=RPL12 PE=1 SV=2)

HSP 1 Score: 343.6 bits (880), Expect = 1.400e-93
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 

		  

Query: 1   MAATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEA 60
           MAATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEA
Sbjct: 1   MAATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEA 60

Query: 61  PEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEEKT 120
           PEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEEKT
Sbjct: 61  PEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEEKT 120

Query: 121 EFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLE 180
           EFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLE
Sbjct: 121 EFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLE 180

Query: 181 DAGAKVSIV 190
           DAGAKVSIV
Sbjct: 181 DAGAKVSIV 189
[Close]
BLAST of Spo18209.1 vs. ExPASy Swiss-Prot
Match: RK12_NICSY (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.100e-53
Identity = 131/191 (68.59%), Postives = 149/191 (78.01%), Query Frame = 1 

		  

Query: 1   MAATTTMATLNLPS---LTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAA 60
           MA+T +  TL  PS    TS   S  FPK  + L+FP RT      L + R T LRP+AA
Sbjct: 1   MASTLSTITLRSPSPSTATSTHASIPFPK--KTLEFPIRTP----KLQNRRATFLRPLAA 60

Query: 61  VEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVE 120
           VEAPEK+ QLG ++S LTL +A+ LV++LQDKLGV+AASFAPAA VAAPGA A+A   VE
Sbjct: 61  VEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAAEAPAVVE 120

Query: 121 EKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKK 180
           EKTEFDV IDEVPSNARI+ IKAVRALTSL LKEAKELIEGLPKK KEGVSKD+AEDAKK
Sbjct: 121 EKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKK 180

Query: 181 QLEDAGAKVSI 189
           QLE+AGAKVSI
Sbjct: 181 QLEEAGAKVSI 185
[Close]
BLAST of Spo18209.1 vs. ExPASy Swiss-Prot
Match: RK12_TOBAC (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum GN=RPL12 PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.600e-52
Identity = 126/189 (66.67%), Postives = 146/189 (77.25%), Query Frame = 1 

		  

Query: 1   MAATTTMATLNLPS-LTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVE 60
           MA+T +  TL  PS  T+    ++ P   + L+FP RT      L   R T LRP+AAVE
Sbjct: 1   MASTLSTITLRSPSPSTASSTHASIPFPKKALEFPIRTP----KLHHRRATFLRPLAAVE 60

Query: 61  APEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEEK 120
           APEK+ QLG ++S LTL +A+ LV++LQDKLGV+AASFAPAA  AAPGA A+A   VEEK
Sbjct: 61  APEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAAEAPAVVEEK 120

Query: 121 TEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQL 180
           TEFDV IDEVPSNARI+ IKAVRALTSL LKEAKELIEGLPKK KEGVSKD+AEDAKKQL
Sbjct: 121 TEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQL 180

Query: 181 EDAGAKVSI 189
           E+AGAKVSI
Sbjct: 181 EEAGAKVSI 185
[Close]
BLAST of Spo18209.1 vs. ExPASy Swiss-Prot
Match: RK121_ARATH (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana GN=RPL12A PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.000e-48
Identity = 115/188 (61.17%), Postives = 142/188 (75.53%), Query Frame = 1 

		  

Query: 1   MAATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEA 60
           ++  TT+ + + P+L S    + FP     ++FP R      S  + R T LRPIAAVEA
Sbjct: 6   LSIATTIRSSSYPTLAS---INHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIAAVEA 65

Query: 61  PEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEEKT 120
           PEKIE++G+++S LTLEEAR+LVD+LQDK GVS  S APAAA  A  A   AA  VEE+T
Sbjct: 66  PEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGGAAAVVEEQT 125

Query: 121 EFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLE 180
           EFDV I+EVPS++RI+VIKAVRALTSL LKEAKELIEGLPKK KEG++KD+AE+AKK LE
Sbjct: 126 EFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLE 185

Query: 181 DAGAKVSI 189
           +AGAKVSI
Sbjct: 186 EAGAKVSI 190
[Close]
BLAST of Spo18209.1 vs. ExPASy Swiss-Prot
Match: RK123_ARATH (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=2)

HSP 1 Score: 192.6 bits (488), Expect = 4.000e-48
Identity = 117/190 (61.58%), Postives = 145/190 (76.32%), Query Frame = 1 

		  

Query: 1   MAATTTMATLNLPSLTSHPNSST--FPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAV 60
           MA+TT      + S +   ++ST  F   P  ++FPFR +++    SS R   LRPI+AV
Sbjct: 1   MASTTLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSS----SSHRAINLRPISAV 60

Query: 61  EAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEE 120
           EAPEKIE++G+++S LTLEEAR+LVD+LQDK GVS  S APAAA  A  A   AA  VEE
Sbjct: 61  EAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGGAAAVVEE 120

Query: 121 KTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQ 180
           +TEFDV I+EVPS++RI+VIKAVRALTSL LKEAKELIEGLPKK KEG++KD+AE+AKK 
Sbjct: 121 QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKT 180

Query: 181 LEDAGAKVSI 189
           LE+AGAKVSI
Sbjct: 181 LEEAGAKVSI 186
[Close]
BLAST of Spo18209.1 vs. TAIR (Arabidopsis)
Match: AT3G27830.1 (ribosomal protein L12-A)

HSP 1 Score: 192.6 bits (488), Expect = 2.200e-49
Identity = 115/188 (61.17%), Postives = 142/188 (75.53%), Query Frame = 1 

		  

Query: 1   MAATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEA 60
           ++  TT+ + + P+L S    + FP     ++FP R      S  + R T LRPIAAVEA
Sbjct: 6   LSIATTIRSSSYPTLAS---INHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIAAVEA 65

Query: 61  PEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEEKT 120
           PEKIE++G+++S LTLEEAR+LVD+LQDK GVS  S APAAA  A  A   AA  VEE+T
Sbjct: 66  PEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGGAAAVVEEQT 125

Query: 121 EFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLE 180
           EFDV I+EVPS++RI+VIKAVRALTSL LKEAKELIEGLPKK KEG++KD+AE+AKK LE
Sbjct: 126 EFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLE 185

Query: 181 DAGAKVSI 189
           +AGAKVSI
Sbjct: 186 EAGAKVSI 190
[Close]
BLAST of Spo18209.1 vs. TAIR (Arabidopsis)
Match: AT3G27850.1 (ribosomal protein L12-C)

HSP 1 Score: 192.6 bits (488), Expect = 2.200e-49
Identity = 117/190 (61.58%), Postives = 145/190 (76.32%), Query Frame = 1 

		  

Query: 1   MAATTTMATLNLPSLTSHPNSST--FPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAV 60
           MA+TT      + S +   ++ST  F   P  ++FPFR +++    SS R   LRPI+AV
Sbjct: 1   MASTTLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSS----SSHRAINLRPISAV 60

Query: 61  EAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEE 120
           EAPEKIE++G+++S LTLEEAR+LVD+LQDK GVS  S APAAA  A  A   AA  VEE
Sbjct: 61  EAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGGAAAVVEE 120

Query: 121 KTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQ 180
           +TEFDV I+EVPS++RI+VIKAVRALTSL LKEAKELIEGLPKK KEG++KD+AE+AKK 
Sbjct: 121 QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKT 180

Query: 181 LEDAGAKVSI 189
           LE+AGAKVSI
Sbjct: 181 LEEAGAKVSI 186
[Close]
BLAST of Spo18209.1 vs. TAIR (Arabidopsis)
Match: AT3G27840.1 (ribosomal protein L12-B)

HSP 1 Score: 155.6 bits (392), Expect = 3.000e-38
Identity = 102/195 (52.31%), Postives = 133/195 (68.21%), Query Frame = 1 

		  

Query: 1   MAATTTM--ATLNLPSLTSHPNSST-FPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAA 60
           MAATT     T+   S +S   S+  FP  P  ++FPF    +  S  S R   L PI+A
Sbjct: 1   MAATTLSIATTIRSSSFSSGLASAHHFPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISA 60

Query: 61  VEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPAD---AAP 120
           V+ P+KI+++G+++S LTLEE+R+LVD++QDK GVS    APAAA   P  P D   A  
Sbjct: 61  VKTPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPP--PLDNGGATA 120

Query: 121 AVEEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAED 180
           +VE +T FDV I++VP   RI+VI A+RA+TSL L E+KELIEG PKK KEGV+KD+AE+
Sbjct: 121 SVERQTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEE 180

Query: 181 AKKQLEDAGAKVSIV 190
            K QLE+AGAKVSIV
Sbjct: 181 DKTQLEEAGAKVSIV 193
[Close]
BLAST of Spo18209.1 vs. TAIR (Arabidopsis)
Match: AT4G36420.1 (Ribosomal protein L12 family protein)

HSP 1 Score: 73.9 bits (180), Expect = 1.200e-13
Identity = 53/136 (38.97%), Postives = 80/136 (58.82%), Query Frame = 1 

		  

Query: 62  EKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSA----ASFAPAAAVAAPGAPADAAPAVE 121
           E + ++  +LS LTL E   L + L+ KL +S     A+  P  ++   GA   A    +
Sbjct: 43  ENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGASKSAGGEGK 102

Query: 122 EK-----TEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDA 181
           EK     T FDV +    + ++I VIK VR +T+LGLKEAK+L+E  P  LK+GVSK++A
Sbjct: 103 EKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKEEA 162

Query: 182 EDAKKQLEDAGAKVSI 189
           E   ++L+  GAKV++
Sbjct: 163 EKIIEKLKAVGAKVAM 178
[Close]
BLAST of Spo18209.1 vs. TAIR (Arabidopsis)
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 65.1 bits (157), Expect = 5.400e-11
Identity = 55/153 (35.95%), Postives = 85/153 (55.56%), Query Frame = 1 

		  

Query: 48  RTTRL----RPIAAVEAPE----KIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAP 107
           RTT L    R + AV +PE    K+E++   L  L   E          K+G++      
Sbjct: 18  RTTPLSSATRHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRYG--- 77

Query: 108 AAAVAAPGAPADAAPAVE----EKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKEL 167
            +AVA  G+  DA+ + E    EKT FDV +++  + ++I VIK +RA T LGLKEAK L
Sbjct: 78  -SAVAVTGSVGDASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKAL 137

Query: 168 IEGLPKKLKEGVSKDDAEDAKKQLEDAGAKVSI 189
           +E  P  +K G++K++AE   ++L+  GA V++
Sbjct: 138 VEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVAL 166
The following BLAST results are available for this feature:
BLAST of Spo18209.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|133085|sp|P02398.2|RK12_SPIOL2.2e-91100.RecName: Full=50S ribosomal pr... [more]
gi|731364043|ref|XP_010693759.1|6.3e-7889.8PREDICTED: 50S ribosomal prote... [more]
gi|223560|prf||0812296A2.0e-5597.6protein,chloroplast ribosomal[more]
gi|729305416|ref|XP_010528249.1|3.1e-5370.0PREDICTED: 50S ribosomal prote... [more]
gi|225452430|ref|XP_002277258.1|4.1e-5369.1PREDICTED: 50S ribosomal prote... [more]
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BLAST of Spo18209.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
Q53WU1_SPIOL1.5e-91100.50S ribosomal protein L12, chl... [more]
A0A0J8BD62_BETVU4.4e-7889.8Uncharacterized protein OS=Bet... [more]
F6HUY7_VITVI2.8e-5369.1Putative uncharacterized prote... [more]
A0A067L3E5_JATCU3.1e-5269.1Uncharacterized protein OS=Jat... [more]
M5XA31_PRUPE9.2e-5267.1Uncharacterized protein OS=Pru... [more]
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BLAST of Spo18209.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RK12_SPIOL1.4e-93100.50S ribosomal protein L12, chl... [more]
RK12_NICSY1.1e-5368.550S ribosomal protein L12, chl... [more]
RK12_TOBAC1.6e-5266.650S ribosomal protein L12, chl... [more]
RK121_ARATH4.0e-4861.150S ribosomal protein L12-1, c... [more]
RK123_ARATH4.0e-4861.550S ribosomal protein L12-3, c... [more]
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BLAST of Spo18209.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G27830.12.2e-4961.1ribosomal protein L12-A[more]
AT3G27850.12.2e-4961.5ribosomal protein L12-C[more]
AT3G27840.13.0e-3852.3ribosomal protein L12-B[more]
AT4G36420.11.2e-1338.9Ribosomal protein L12 family p... [more]
AT4G37660.15.4e-1135.9Ribosomal protein L12/ ATP-dep... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 57..189
score: 22
IPR000206Ribosomal protein L7/L12TIGRFAMsTIGR00855TIGR00855coord: 63..188
score: 1.6
IPR008932Ribosomal protein L7/L12, oligomerisationPFAMPF16320Ribosomal_L12_Ncoord: 63..112
score: 1.3
IPR008932Ribosomal protein L7/L12, oligomerisationunknownSSF48300Ribosomal protein L7/12, oligomerisation (N-terminal) domaincoord: 63..124
score: 6.93
IPR013823Ribosomal protein L7/L12, C-terminalPRODOMPD001326coord: 123..188
score: 5.0
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 122..188
score: 1.1
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 115..188
score: 3.2
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeunknownSSF54736ClpS-likecoord: 117..188
score: 1.46
NoneNo IPR availableGENE3D1.20.5.710coord: 65..110
score: 2.

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042742 defense response to bacterium
biological_process GO:0010468 regulation of gene expression
biological_process GO:0006782 protoporphyrinogen IX biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0010020 chloroplast fission
biological_process GO:0000918 division septum site selection
biological_process GO:0000302 response to reactive oxygen species
biological_process GO:0032880 regulation of protein localization
biological_process GO:0006418 tRNA aminoacylation for protein translation
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0009735 response to cytokinin
biological_process GO:0031347 regulation of defense response
biological_process GO:0006508 proteolysis
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0009853 photorespiration
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0006979 response to oxidative stress
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0009744 response to sucrose
biological_process GO:0010114 response to red light
biological_process GO:0010218 response to far red light
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0019852 L-ascorbic acid metabolic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009637 response to blue light
biological_process GO:0010155 regulation of proton transport
biological_process GO:0045038 protein import into chloroplast thylakoid membrane
biological_process GO:0046777 protein autophosphorylation
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0030154 cell differentiation
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0051788 response to misfolded protein
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005739 mitochondrion
cellular_component GO:0080085 signal recognition particle, chloroplast targeting
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005786 signal recognition particle, endoplasmic reticulum targeting
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0048046 apoplast
cellular_component GO:0005622 intracellular
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0044424 intracellular part
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0000311 plastid large ribosomal subunit
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0005829 cytosol
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0020037 heme binding
molecular_function GO:0016688 L-ascorbate peroxidase activity
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0004109 coproporphyrinogen oxidase activity
molecular_function GO:0042803 protein homodimerization activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0030899 calcium-dependent ATPase activity
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0000049 tRNA binding
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0042802 identical protein binding
RNA-Seq Expression