Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGTGCTTTGTTAATTGTGAACCACTCCACTCCAGAAAACTTAAAGGGCTGTTTGGTTCTTCCTTATTCCTAATTCCTAAACAATGGACACTCTTTCTTCCCTTTCCACCTTCCCTCTTATCCCTCTTAACTTTACTAATTCCTCAAGCAATAACCAAACACGTCTAATCAACCAAAGTGGTAAATCATTAATTAATTATCACCTTAATCCTAAATTAAGAAACTCAACAAAACAATATTATAATTGTATCAAAGTTAGGCAATTGGAGGTGAGGGTGAAAGCAATAGATGATGTTTCAGGAGCAATTGGAGATCCAGCTCAAGCTCAACTTACTTGGCAAATCATTGTTGGCTCTCTAGGTATTTTTATAATTAATTAATTATTGCTTCATGATCAACTTTAGAGGATATACAGTTTGTGGCCGAGAAACTTTTGTATGAGACGGTTGTACACTACTCCTCCCGTCTCTTTTTTGTTTTTTACGTTTGGTATTTTTCACGCGTTTTAACGACTAATTAATGTGCATTGAGATTCTTCTAAGTTTTTCATGTAAACGAGGAAAATTACGTTTATTTATAATATTTTCACTCTTATCAAAATTCTGATATGGGGAAAATGAGAAAAAAGTGTGAGGGATTAAATGACTCAATTGATTTAATTGGTTAATATAATAATTGGGTACTCCCTCCGTCCCGGAATACTCGACCCGGTTTGACCGGTACAGAGTTTAAGGGACTTGAATTGACTTATTTAATTTAATAGGTAGTAGTTGATAGTGGGGTATTATTTTAATGTAGCTAGTGGGAGGTGGGTTAAGAGGTGGGGTTGGGGGAGAGTAGGGGTTGAATTTTTAATTATTTTTTGTATGGAGTAGGGGGTACGTGGGTTAATAGGGGTGGAGTGAGAAATAATATAATATTGTTAGAATATTTCCATTTTTAGAAACAGGTCAAGTATTAAGGGACGGCCCGATAAGAAAAACAGGTCAAGTATTCCGGGACGGAGGGAGTACAAATTTTGATAGAATATTAAATCATTTATGTGATAATATAAATGAAATGTAAAGAACATTTCAAAACACCAAAAAAGGAAAACGTAAAAAATAAAAAGAGACGGAGGGAGTAGTTTTTTAATGGTATTTTAATCTCATCTAAGATTTGCAAAGAAGGCTATCTCGGCAAACAAGGGATGACATAAAAGAATACCAAGCTACTACGTGTTTGGGTTACACTAATTGTATTTTGGTTCTTAATACTTGCGTATATGTTATGCAAGGGTCTCTAAAATCATTGTAGTGTAGTTTGCTTAGGTTATACTCCCTCCGTCCCTTAATACTCGCACCGGTTTGATCGGTGCAGAGTTTAAGATATTTGAATTGACTTAATAATTTAATAGTGTTAGTTGATAGTGGAGTATTTTTTTAATATAGTTAGTGGAAAATGTGTAAGAGATGGAGAGTGGTGGGTGGGGTATATGAATTTTTAAATGATTTTTTGTAGGGAATAGTGGTGTAGGTGGGTTAGTAGGTTAGTGTGAGAAATAATATAATATTGGTAAGAATTTCCATTTATAGAAACGGTGCAAGTATTAAGGGACGGCCCGAAAAAAAAACGGTGCGAGTATTAAGGAACGAAGGGAGTAATAAGTTAACTTTTTTTAATAAAAAAAAAAAAAAAAAAAATGCTAAGTTGGCATCTATTGCTAATGCAGCTGGTGTCATACCTTTTATTGTTGCGGGAATTGAATTCAGCAAAAGAATTGTAAGTCATTTATTTATTTATCTTTAACGTCTTTCACTTGTGAATCTATACTTAGTCTATACTTAATCTCTCCTTCTCTTTTTGTTCTTTACGTTTTTTTTTTGTCTTAAAATATTCTTTACATTTTCTTTTATATTATCACATAAATATTTTAACATTCAATTAAAATTTATGTCCATGATTATTTTAACCAATTAAATTCATTGGGTCATTTAATCTCCTACACTTTTTCATTGGGACATTAATTTTTTCTCATTTTTCCAATATCAGACTTTTGATAAAGGTGAAAACATTATAAATAAACATAATTTGCCTAAAAAATAGAGGATTCTCAATGCACATTAATTAGTCGTTAAAACGCGTGTAAAATAACACACGTAAAAACATAGACGGAGGGCTAGTATTTCATACATTATACGGAGTATATATAATGTTCTCGTGCATTAAACGGATTAAAATGTTAGTCCTGATAAATAAATACTCCATTATTGACATTGAAACTAAAATTATATCTAATGCTTACAGGCAGCACAAAGAAGGTGTGAGGTTTGTGGAGGTTCGGGATTAGTTTTAAGGGACAAAAAATACTATTTCAAGTGCCCTGGTTGTGGTATGTGTTCAACCTTTGAAATCTTCATTATTTTTAATTAACACGTACTATCTTCGTTTTAAAATAATTTTTACGCTTTTCGTATTAGTCCATTTCATAATGTTTTTTAGTTTTTTACATTGTGCTTTATTCTATTTTTGAACATGAAAGTTTTACTATCTTATCTCTCTTACCCCCACAATATTCATCAGTTTTCACTCACTTTCTCTTATTTTATTTATCTTTCATTACATCCATCACTTACTTTAACCATATTTTATTATATCCACCCACCTTTTAACACAATATTCCTTTTTATCTTAATATTTGAGCAAATTGTAACCGTAAAAAACATCATGAAAAGGATGTAGTATACTTATAAAAATTTGAAAGCTTAATATTAGAAAAACTCATGTTGAAACGAATCTAACAAGATTTTGCTTGATAATGTTTTTGTTTATTATAGTAAATTATGAAAGACGGTAAACTTTTTATAAATACGACCACATGAATGTTAAATATGAATAATTTAATGGAAAGGAGCAAGTATAATGTTAGAATATGCCTTGAATCGGTCATTCCTCTTACTGCGACACCCCAACACGAGGTTTATCTATTTTGGGCCTATTTTTTGGGCTTTTCCGCATCTGTTTAGAGAGTACTATATAAATTTTGTAGGTCATAACCTAGTTGTATTCTATAATCTGTACTCCTCAAGATTAATAGAACTTTCCTCTCTTCTGCATGTGGACATAGTTAACACATCGTTAGTGAACCACGTTAAATCTCTGTATTCTTTGTTTACGTTATTTATAATATTTCTTGCTTCTGTTATAACATATAAAGTGGAGTAATAGAGCTCCGTAATATTCATGTATCTCGTGTGCATCATTTTAAGACGACTGTAATGGTGTTTGATTCTTTAATATTTTTCTTTGACAGGGGGTTTTCTACCATGGCAATCTTGGAAAAGATTCTTTTCGGGATGATATAGGGGTTGTTTGGTTATAATATTCGATCGTGAGAAGAAAAAATGTTTTCCAACTACAGAGAAGAGATTAATAGAAATTAAGTGAATTTACTTACCAATGTTTATACAAAAACCCTCTATTATGTACACCTAGTCGACCAGCTTATGTCAAAAACATAGGTTAGCACTATGAAATTACACCTTTTTTTATTTTTTATTTTATCTTATTCCTTCAATATAACTGAAAATAATTAAAAAGTGAATAACGATTGATTATGATATGGTTACTTACTAA AGTGCTTTGTTAATTGTGAACCACTCCACTCCAGAAAACTTAAAGGGCTGTTTGGTTCTTCCTTATTCCTAATTCCTAAACAATGGACACTCTTTCTTCCCTTTCCACCTTCCCTCTTATCCCTCTTAACTTTACTAATTCCTCAAGCAATAACCAAACACGTCTAATCAACCAAAGTGGTAAATCATTAATTAATTATCACCTTAATCCTAAATTAAGAAACTCAACAAAACAATATTATAATTGTATCAAAGTTAGGCAATTGGAGGTGAGGGTGAAAGCAATAGATGATGTTTCAGGAGCAATTGGAGATCCAGCTCAAGCTCAACTTACTTGGCAAATCATTGTTGGCTCTCTAGCTGGTGTCATACCTTTTATTGTTGCGGGAATTGAATTCAGCAAAAGAATTGCAGCACAAAGAAGGTGTGAGGTTTGTGGAGGTTCGGGATTAGTTTTAAGGGACAAAAAATACTATTTCAAGTGCCCTGGTTGTGGGGGTTTTCTACCATGGCAATCTTGGAAAAGATTCTTTTCGGGATGATATAGGGGTTGTTTGGTTATAATATTCGATCGTGAGAAGAAAAAATGTTTTCCAACTACAGAGAAGAGATTAATAGAAATTAAGTGAATTTACTTACCAATGTTTATACAAAAACCCTCTATTATGTACACCTAGTCGACCAGCTTATGTCAAAAACATAGGTTAGCACTATGAAATTACACCTTTTTTTATTTTTTATTTTATCTTATTCCTTCAATATAACTGAAAATAATTAAAAAGTGAATAACGATTGATTATGATATGGTTACTTACTAA ATGGACACTCTTTCTTCCCTTTCCACCTTCCCTCTTATCCCTCTTAACTTTACTAATTCCTCAAGCAATAACCAAACACGTCTAATCAACCAAAGTGGTAAATCATTAATTAATTATCACCTTAATCCTAAATTAAGAAACTCAACAAAACAATATTATAATTGTATCAAAGTTAGGCAATTGGAGGTGAGGGTGAAAGCAATAGATGATGTTTCAGGAGCAATTGGAGATCCAGCTCAAGCTCAACTTACTTGGCAAATCATTGTTGGCTCTCTAGCTGGTGTCATACCTTTTATTGTTGCGGGAATTGAATTCAGCAAAAGAATTGCAGCACAAAGAAGGTGTGAGGTTTGTGGAGGTTCGGGATTAGTTTTAAGGGACAAAAAATACTATTTCAAGTGCCCTGGTTGTGGGGGTTTTCTACCATGGCAATCTTGGAAAAGATTCTTTTCGGGATGA MDTLSSLSTFPLIPLNFTNSSSNNQTRLINQSGKSLINYHLNPKLRNSTKQYYNCIKVRQLEVRVKAIDDVSGAIGDPAQAQLTWQIIVGSLAGVIPFIVAGIEFSKRIAAQRRCEVCGGSGLVLRDKKYYFKCPGCGGFLPWQSWKRFFSG Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo18231.1 vs. NCBI nr
Match: gi|902225344|gb|KNA20038.1| (hypothetical protein SOVF_056140 [Spinacia oleracea]) HSP 1 Score: 308.5 bits (789), Expect = 6.400e-81 Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1
BLAST of Spo18231.1 vs. NCBI nr
Match: gi|731329985|ref|XP_010675883.1| (PREDICTED: uncharacterized protein LOC104891824 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 209.5 bits (532), Expect = 4.000e-51 Identity = 118/152 (77.63%), Postives = 126/152 (82.89%), Query Frame = 1
BLAST of Spo18231.1 vs. NCBI nr
Match: gi|702378735|ref|XP_010063087.1| (PREDICTED: uncharacterized protein LOC104450289 [Eucalyptus grandis]) HSP 1 Score: 153.7 bits (387), Expect = 2.600e-34 Identity = 74/118 (62.71%), Postives = 95/118 (80.51%), Query Frame = 1
BLAST of Spo18231.1 vs. NCBI nr
Match: gi|719989595|ref|XP_010252696.1| (PREDICTED: uncharacterized protein LOC104594204 [Nelumbo nucifera]) HSP 1 Score: 153.3 bits (386), Expect = 3.400e-34 Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 1
BLAST of Spo18231.1 vs. NCBI nr
Match: gi|297737538|emb|CBI26739.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 152.1 bits (383), Expect = 7.600e-34 Identity = 83/148 (56.08%), Postives = 105/148 (70.95%), Query Frame = 1
BLAST of Spo18231.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKL6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056140 PE=4 SV=1) HSP 1 Score: 308.5 bits (789), Expect = 4.400e-81 Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1
BLAST of Spo18231.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CGM8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g089950 PE=4 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 2.800e-51 Identity = 118/152 (77.63%), Postives = 126/152 (82.89%), Query Frame = 1
BLAST of Spo18231.1 vs. UniProtKB/TrEMBL
Match: D7T880_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g01750 PE=4 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 5.300e-34 Identity = 83/148 (56.08%), Postives = 105/148 (70.95%), Query Frame = 1
BLAST of Spo18231.1 vs. UniProtKB/TrEMBL
Match: U5FZL2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s08570g PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 1.100e-31 Identity = 75/117 (64.10%), Postives = 89/117 (76.07%), Query Frame = 1
BLAST of Spo18231.1 vs. UniProtKB/TrEMBL
Match: B9SST3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0047320 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 1.400e-31 Identity = 66/99 (66.67%), Postives = 82/99 (82.83%), Query Frame = 1
BLAST of Spo18231.1 vs. TAIR (Arabidopsis)
Match: AT5G55570.1 (unknown protein) HSP 1 Score: 133.3 bits (334), Expect = 1.300e-31 Identity = 55/86 (63.95%), Postives = 75/86 (87.21%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo18231.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo18231.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo18231.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Spo18231.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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