Spo18250 (gene) | SpinachBase

Overview


Name	Spo18250
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	DUF679 domain membrane protein
Location	chr4 : 122412089 .. 122412763 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGAGCTAAAACAAAGACTTCCATCATCCTCCATCAACCAACCATCTCCCACCTCCGATTTCGACTCTGACTCCGACCACCACCCAACTGCCATCCCCAACAACATACCCGATGATCGTAAACCGTCTATGGCCCAACGGGCCTTGGCAAGCACAGCCAATTTAGCCAACTTGCTACCAACAGGGACCCTCTTAGCCTTCCAAGTACTAACCCCAATCTTCACCAACAACGGGCAGTGCGATATAGCTACTCGGGCCATGACCGGGCTCCTCCTCACGGTCCTTGCCCTGTCCTGCTTCCTAGCATCCTTCACAGACAGCTTTCGAGGCCCGAATGGGCAAGTCTACTATGGTTTCTCCACCATGAAGGGGATGTGGCTATTCGACTACACAGGGCCGGGCCAAGTTGCGGTTGATCTAACTAAGTATAAGCTTAGGTTCATTGATTGGGTTCATGCTGTATTATCTGTGCTTGTGTTTGGAGTTGTGGCTTTAAGAGATAAGAATGTGGTGATCTGCTTTTACCCAAAGCCTAGCCATGAAATTCAGGAGGTTATTAATATATTGCCAATAGGTGTGGGTTTTATTTCTAGTTTGCTCTTTCTTGCTTTTCCTACCAGAAGACATGGTATTGGCTACCCTGTTTCTAATGCCAATCAACTTTCTACCTAG

mRNA sequence

ATGTCAGAGCTAAAACAAAGACTTCCATCATCCTCCATCAACCAACCATCTCCCACCTCCGATTTCGACTCTGACTCCGACCACCACCCAACTGCCATCCCCAACAACATACCCGATGATCGTAAACCGTCTATGGCCCAACGGGCCTTGGCAAGCACAGCCAATTTAGCCAACTTGCTACCAACAGGGACCCTCTTAGCCTTCCAAGTACTAACCCCAATCTTCACCAACAACGGGCAGTGCGATATAGCTACTCGGGCCATGACCGGGCTCCTCCTCACGGTCCTTGCCCTGTCCTGCTTCCTAGCATCCTTCACAGACAGCTTTCGAGGCCCGAATGGGCAAGTCTACTATGGTTTCTCCACCATGAAGGGGATGTGGCTATTCGACTACACAGGGCCGGGCCAAGTTGCGGTTGATCTAACTAAGTATAAGCTTAGGTTCATTGATTGGGTTCATGCTGTATTATCTGTGCTTGTGTTTGGAGTTGTGGCTTTAAGAGATAAGAATGTGGTGATCTGCTTTTACCCAAAGCCTAGCCATGAAATTCAGGAGGTTATTAATATATTGCCAATAGGTGTGGGTTTTATTTCTAGTTTGCTCTTTCTTGCTTTTCCTACCAGAAGACATGGTATTGGCTACCCTGTTTCTAATGCCAATCAACTTTCTACCTAG

Coding sequence (CDS)

ATGTCAGAGCTAAAACAAAGACTTCCATCATCCTCCATCAACCAACCATCTCCCACCTCCGATTTCGACTCTGACTCCGACCACCACCCAACTGCCATCCCCAACAACATACCCGATGATCGTAAACCGTCTATGGCCCAACGGGCCTTGGCAAGCACAGCCAATTTAGCCAACTTGCTACCAACAGGGACCCTCTTAGCCTTCCAAGTACTAACCCCAATCTTCACCAACAACGGGCAGTGCGATATAGCTACTCGGGCCATGACCGGGCTCCTCCTCACGGTCCTTGCCCTGTCCTGCTTCCTAGCATCCTTCACAGACAGCTTTCGAGGCCCGAATGGGCAAGTCTACTATGGTTTCTCCACCATGAAGGGGATGTGGCTATTCGACTACACAGGGCCGGGCCAAGTTGCGGTTGATCTAACTAAGTATAAGCTTAGGTTCATTGATTGGGTTCATGCTGTATTATCTGTGCTTGTGTTTGGAGTTGTGGCTTTAAGAGATAAGAATGTGGTGATCTGCTTTTACCCAAAGCCTAGCCATGAAATTCAGGAGGTTATTAATATATTGCCAATAGGTGTGGGTTTTATTTCTAGTTTGCTCTTTCTTGCTTTTCCTACCAGAAGACATGGTATTGGCTACCCTGTTTCTAATGCCAATCAACTTTCTACCTAG

Protein sequence

MSELKQRLPSSSINQPSPTSDFDSDSDHHPTAIPNNIPDDRKPSMAQRALASTANLANLLPTGTLLAFQVLTPIFTNNGQCDIATRAMTGLLLTVLALSCFLASFTDSFRGPNGQVYYGFSTMKGMWLFDYTGPGQVAVDLTKYKLRFIDWVHAVLSVLVFGVVALRDKNVVICFYPKPSHEIQEVINILPIGVGFISSLLFLAFPTRRHGIGYPVSNANQLST

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo18250.1	Spo18250.1	mRNA

Homology

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BLAST of Spo18250.1 vs. NCBI nr
Match: gi|902235272|gb|KNA23833.1| (hypothetical protein SOVF_020600 [Spinacia oleracea])

HSP 1 Score: 447.2 bits (1149), Expect = 1.700e-122
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1


		  
Query: 1   MSELKQRLPSSSINQPSPTSDFDSDSDHHPTAIPNNIPDDRKPSMAQRALASTANLANLL 60
           MSELKQRLPSSSINQPSPTSDFDSDSDHHPTAIPNNIPDDRKPSMAQRALASTANLANLL
Sbjct: 1   MSELKQRLPSSSINQPSPTSDFDSDSDHHPTAIPNNIPDDRKPSMAQRALASTANLANLL 60

Query: 61  PTGTLLAFQVLTPIFTNNGQCDIATRAMTGLLLTVLALSCFLASFTDSFRGPNGQVYYGF 120
           PTGTLLAFQVLTPIFTNNGQCDIATRAMTGLLLTVLALSCFLASFTDSFRGPNGQVYYGF
Sbjct: 61  PTGTLLAFQVLTPIFTNNGQCDIATRAMTGLLLTVLALSCFLASFTDSFRGPNGQVYYGF 120

Query: 121 STMKGMWLFDYTGPGQVAVDLTKYKLRFIDWVHAVLSVLVFGVVALRDKNVVICFYPKPS 180
           STMKGMWLFDYTGPGQVAVDLTKYKLRFIDWVHAVLSVLVFGVVALRDKNVVICFYPKPS
Sbjct: 121 STMKGMWLFDYTGPGQVAVDLTKYKLRFIDWVHAVLSVLVFGVVALRDKNVVICFYPKPS 180

Query: 181 HEIQEVINILPIGVGFISSLLFLAFPTRRHGIGYPVSNANQLST 225
           HEIQEVINILPIGVGFISSLLFLAFPTRRHGIGYPVSNANQLST
Sbjct: 181 HEIQEVINILPIGVGFISSLLFLAFPTRRHGIGYPVSNANQLST 224

[Close]

BLAST of Spo18250.1 vs. NCBI nr
Match: gi|731326781|ref|XP_010674193.1| (PREDICTED: uncharacterized protein LOC104890412 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 307.4 bits (786), Expect = 2.100e-80
Identity = 161/227 (70.93%), Postives = 188/227 (82.82%), Query Frame = 1


		  
Query: 1   MSELKQRLPSSSINQPSPTSDFDSDSDHHPTAIPNNIPDDRK------PSMAQRALASTA 60
           MS+LKQRLPS+SI QPS T    S+SDH  +   N I DDRK      PS+ QRAL STA
Sbjct: 1   MSQLKQRLPSTSIKQPSST----SNSDHQTS--NNTISDDRKPEPPLQPSITQRALTSTA 60

Query: 61  NLANLLPTGTLLAFQVLTPIFTNNGQCDIATRAMTGLLLTVLALSCFLASFTDSFRGPNG 120
           NLANLLPTGTLLAFQ+LTPIFTN+GQCDI TR++T LLL +L +SCFLASFTDSFR P+G
Sbjct: 61  NLANLLPTGTLLAFQLLTPIFTNHGQCDITTRSLTTLLLALLGISCFLASFTDSFRAPDG 120

Query: 121 QVYYGFSTMKGMWLFDYTGPGQVAVDLTKYKLRFIDWVHAVLSVLVFGVVALRDKNVVIC 180
           +VYYGF+T+KG+WLFDY     V VDL KYKLRFID VHAVLS++VFGVV+LRDKNVV C
Sbjct: 121 RVYYGFATLKGIWLFDYY-TDTVEVDLAKYKLRFIDCVHAVLSIIVFGVVSLRDKNVVNC 180

Query: 181 FYPKPSHEIQEVINILPIGVGFISSLLFLAFPTRRHGIGYPVSNANQ 222
           FYPKP+ E+QEV++ILP+GVG I SLLF+AFPTRRHGIGYPV+NA +
Sbjct: 181 FYPKPTQEVQEVLDILPLGVGVICSLLFVAFPTRRHGIGYPVTNATK 220

[Close]

BLAST of Spo18250.1 vs. NCBI nr
Match: gi|823136158|ref|XP_012467832.1| (PREDICTED: uncharacterized protein LOC105786099 [Gossypium raimondii])

HSP 1 Score: 255.4 bits (651), Expect = 9.400e-65
Identity = 128/185 (69.19%), Postives = 152/185 (82.16%), Query Frame = 1


		  
Query: 38  PDDRKPSMAQRA----LASTANLANLLPTGTLLAFQVLTPIFTNNGQCDIATRAMTGLLL 97
           P  R P+++QRA    LASTANLANLLPTGTLLAFQ+L P FTNNG CD ATR+MT LLL
Sbjct: 35  PQPRPPTLSQRAISQTLASTANLANLLPTGTLLAFQLLVPTFTNNGSCDAATRSMTLLLL 94

Query: 98  TVLALSCFLASFTDSFRGPNGQVYYGFSTMKGMWLFDYTGPGQVAV-DLTKYKLRFIDWV 157
            +LALSCFLASFTDS +  +GQVYYGF+T KGM+LFDY    +  + DL+KY+++F+D V
Sbjct: 95  LLLALSCFLASFTDSVKSSDGQVYYGFATFKGMFLFDYPDSKESDLPDLSKYRIKFMDGV 154

Query: 158 HAVLSVLVFGVVALRDKNVVICFYPKPSHEIQEVINILPIGVGFISSLLFLAFPTRRHGI 217
           HAVLSVLVFGVVALRDKNV+ CFYP P HE +EV+NI P+GVG + SLLF+ FPTRRHGI
Sbjct: 155 HAVLSVLVFGVVALRDKNVLNCFYPTPKHETEEVLNIAPVGVGLVCSLLFVVFPTRRHGI 214

[Close]

BLAST of Spo18250.1 vs. NCBI nr
Match: gi|590682026|ref|XP_007041237.1| (Uncharacterized protein TCM_006175 [Theobroma cacao])

HSP 1 Score: 254.2 bits (648), Expect = 2.100e-64
Identity = 130/199 (65.33%), Postives = 155/199 (77.89%), Query Frame = 1


		  
Query: 24  SDSDHHPTAIPNNIPDDRKPSMAQRA----LASTANLANLLPTGTLLAFQVLTPIFTNNG 83
           S ++H P   P +    R PS++QRA    L STANLANLLPTGTLLAFQ+L PIFTNNG
Sbjct: 22  STNNHEPGETPRS--PSRPPSLSQRAISQTLTSTANLANLLPTGTLLAFQLLMPIFTNNG 81

Query: 84  QCDIATRAMTGLLLTVLALSCFLASFTDSFRGPNGQVYYGFSTMKGMWLFDYTGP-GQVA 143
            CD ATR MT +LL +LALSCFLA FTDS +  +GQVYYGF+T KGM+LFD+  P G   
Sbjct: 82  SCDSATRPMTLVLLLLLALSCFLACFTDSVKSSDGQVYYGFATFKGMFLFDFPDPTGSTL 141

Query: 144 VDLTKYKLRFIDWVHAVLSVLVFGVVALRDKNVVICFYPKPSHEIQEVINILPIGVGFIS 203
            DL+KY+++FID VHAVLSVLVFG VALRDKNV+ CFYP P HE QEV++I P+G+G I 
Sbjct: 142 PDLSKYRIKFIDGVHAVLSVLVFGAVALRDKNVLNCFYPTPKHETQEVLSIAPVGIGLIC 201

Query: 204 SLLFLAFPTRRHGIGYPVS 218
           SLLF+ FPTRRHGIGYP++
Sbjct: 202 SLLFVVFPTRRHGIGYPIT 218

[Close]

BLAST of Spo18250.1 vs. NCBI nr
Match: gi|661899616|emb|CDO97610.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 252.7 bits (644), Expect = 6.100e-64
Identity = 131/206 (63.59%), Postives = 152/206 (73.79%), Query Frame = 1


		  
Query: 32  AIPNNIPDDRKPSMAQR------------ALASTANLANLLPTGTLLAFQVLTPIFTNNG 91
           A   + PD  KP   QR            AL STANLANLLPTGTLLAFQ+LTP+FTNNG
Sbjct: 18  ATTEDAPDTPKPQPPQRSSSPLSQRALSQALTSTANLANLLPTGTLLAFQLLTPVFTNNG 77

Query: 92  QCDIATRAMTGLLLTVLALSCFLASFTDSFRGPNGQVYYGFSTMKGMWLFDYTGP----G 151
            CD ATR MT +LL +LA+SCFLASFTDS +  +GQVYYGF+T +GMWLFD  G      
Sbjct: 78  SCDAATRPMTIILLALLAVSCFLASFTDSVKLSDGQVYYGFATFRGMWLFDARGTIASGS 137

Query: 152 QVAV-DLTKYKLRFIDWVHAVLSVLVFGVVALRDKNVVICFYPKPSHEIQEVINILPIGV 211
           +V V DL+KY+L FIDWVH+VLSV VF  VALRDKNVV C YPKP HE+QEV++I+PIG+
Sbjct: 138 EVGVPDLSKYRLGFIDWVHSVLSVFVFAAVALRDKNVVGCLYPKPDHEVQEVLDIVPIGI 197

Query: 212 GFISSLLFLAFPTRRHGIGYPVSNAN 221
           G +  LLFL FPTRRHGIGYPV+  N
Sbjct: 198 GCLCGLLFLVFPTRRHGIGYPVTPGN 223

[Close]

BLAST of Spo18250.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWK0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_020600 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 1.200e-122
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1


		  
Query: 1   MSELKQRLPSSSINQPSPTSDFDSDSDHHPTAIPNNIPDDRKPSMAQRALASTANLANLL 60
           MSELKQRLPSSSINQPSPTSDFDSDSDHHPTAIPNNIPDDRKPSMAQRALASTANLANLL
Sbjct: 1   MSELKQRLPSSSINQPSPTSDFDSDSDHHPTAIPNNIPDDRKPSMAQRALASTANLANLL 60

Query: 61  PTGTLLAFQVLTPIFTNNGQCDIATRAMTGLLLTVLALSCFLASFTDSFRGPNGQVYYGF 120
           PTGTLLAFQVLTPIFTNNGQCDIATRAMTGLLLTVLALSCFLASFTDSFRGPNGQVYYGF
Sbjct: 61  PTGTLLAFQVLTPIFTNNGQCDIATRAMTGLLLTVLALSCFLASFTDSFRGPNGQVYYGF 120

Query: 121 STMKGMWLFDYTGPGQVAVDLTKYKLRFIDWVHAVLSVLVFGVVALRDKNVVICFYPKPS 180
           STMKGMWLFDYTGPGQVAVDLTKYKLRFIDWVHAVLSVLVFGVVALRDKNVVICFYPKPS
Sbjct: 121 STMKGMWLFDYTGPGQVAVDLTKYKLRFIDWVHAVLSVLVFGVVALRDKNVVICFYPKPS 180

Query: 181 HEIQEVINILPIGVGFISSLLFLAFPTRRHGIGYPVSNANQLST 225
           HEIQEVINILPIGVGFISSLLFLAFPTRRHGIGYPVSNANQLST
Sbjct: 181 HEIQEVINILPIGVGFISSLLFLAFPTRRHGIGYPVSNANQLST 224

[Close]

BLAST of Spo18250.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CJH9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g076890 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.500e-80
Identity = 161/227 (70.93%), Postives = 188/227 (82.82%), Query Frame = 1


		  
Query: 1   MSELKQRLPSSSINQPSPTSDFDSDSDHHPTAIPNNIPDDRK------PSMAQRALASTA 60
           MS+LKQRLPS+SI QPS T    S+SDH  +   N I DDRK      PS+ QRAL STA
Sbjct: 1   MSQLKQRLPSTSIKQPSST----SNSDHQTS--NNTISDDRKPEPPLQPSITQRALTSTA 60

Query: 61  NLANLLPTGTLLAFQVLTPIFTNNGQCDIATRAMTGLLLTVLALSCFLASFTDSFRGPNG 120
           NLANLLPTGTLLAFQ+LTPIFTN+GQCDI TR++T LLL +L +SCFLASFTDSFR P+G
Sbjct: 61  NLANLLPTGTLLAFQLLTPIFTNHGQCDITTRSLTTLLLALLGISCFLASFTDSFRAPDG 120

Query: 121 QVYYGFSTMKGMWLFDYTGPGQVAVDLTKYKLRFIDWVHAVLSVLVFGVVALRDKNVVIC 180
           +VYYGF+T+KG+WLFDY     V VDL KYKLRFID VHAVLS++VFGVV+LRDKNVV C
Sbjct: 121 RVYYGFATLKGIWLFDYY-TDTVEVDLAKYKLRFIDCVHAVLSIIVFGVVSLRDKNVVNC 180

Query: 181 FYPKPSHEIQEVINILPIGVGFISSLLFLAFPTRRHGIGYPVSNANQ 222
           FYPKP+ E+QEV++ILP+GVG I SLLF+AFPTRRHGIGYPV+NA +
Sbjct: 181 FYPKPTQEVQEVLDILPLGVGVICSLLFVAFPTRRHGIGYPVTNATK 220

[Close]

BLAST of Spo18250.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QGV6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G216600 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 6.600e-65
Identity = 128/185 (69.19%), Postives = 152/185 (82.16%), Query Frame = 1


		  
Query: 38  PDDRKPSMAQRA----LASTANLANLLPTGTLLAFQVLTPIFTNNGQCDIATRAMTGLLL 97
           P  R P+++QRA    LASTANLANLLPTGTLLAFQ+L P FTNNG CD ATR+MT LLL
Sbjct: 35  PQPRPPTLSQRAISQTLASTANLANLLPTGTLLAFQLLVPTFTNNGSCDAATRSMTLLLL 94

Query: 98  TVLALSCFLASFTDSFRGPNGQVYYGFSTMKGMWLFDYTGPGQVAV-DLTKYKLRFIDWV 157
            +LALSCFLASFTDS +  +GQVYYGF+T KGM+LFDY    +  + DL+KY+++F+D V
Sbjct: 95  LLLALSCFLASFTDSVKSSDGQVYYGFATFKGMFLFDYPDSKESDLPDLSKYRIKFMDGV 154

Query: 158 HAVLSVLVFGVVALRDKNVVICFYPKPSHEIQEVINILPIGVGFISSLLFLAFPTRRHGI 217
           HAVLSVLVFGVVALRDKNV+ CFYP P HE +EV+NI P+GVG + SLLF+ FPTRRHGI
Sbjct: 155 HAVLSVLVFGVVALRDKNVLNCFYPTPKHETEEVLNIAPVGVGLVCSLLFVVFPTRRHGI 214

[Close]

BLAST of Spo18250.1 vs. UniProtKB/TrEMBL
Match: A0A061E467_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006175 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.500e-64
Identity = 130/199 (65.33%), Postives = 155/199 (77.89%), Query Frame = 1


		  
Query: 24  SDSDHHPTAIPNNIPDDRKPSMAQRA----LASTANLANLLPTGTLLAFQVLTPIFTNNG 83
           S ++H P   P +    R PS++QRA    L STANLANLLPTGTLLAFQ+L PIFTNNG
Sbjct: 22  STNNHEPGETPRS--PSRPPSLSQRAISQTLTSTANLANLLPTGTLLAFQLLMPIFTNNG 81

Query: 84  QCDIATRAMTGLLLTVLALSCFLASFTDSFRGPNGQVYYGFSTMKGMWLFDYTGP-GQVA 143
            CD ATR MT +LL +LALSCFLA FTDS +  +GQVYYGF+T KGM+LFD+  P G   
Sbjct: 82  SCDSATRPMTLVLLLLLALSCFLACFTDSVKSSDGQVYYGFATFKGMFLFDFPDPTGSTL 141

Query: 144 VDLTKYKLRFIDWVHAVLSVLVFGVVALRDKNVVICFYPKPSHEIQEVINILPIGVGFIS 203
            DL+KY+++FID VHAVLSVLVFG VALRDKNV+ CFYP P HE QEV++I P+G+G I 
Sbjct: 142 PDLSKYRIKFIDGVHAVLSVLVFGAVALRDKNVLNCFYPTPKHETQEVLSIAPVGIGLIC 201

Query: 204 SLLFLAFPTRRHGIGYPVS 218
           SLLF+ FPTRRHGIGYP++
Sbjct: 202 SLLFVVFPTRRHGIGYPIT 218

[Close]

BLAST of Spo18250.1 vs. UniProtKB/TrEMBL
Match: A0A068TMN8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014996001 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 4.200e-64
Identity = 131/206 (63.59%), Postives = 152/206 (73.79%), Query Frame = 1


		  
Query: 32  AIPNNIPDDRKPSMAQR------------ALASTANLANLLPTGTLLAFQVLTPIFTNNG 91
           A   + PD  KP   QR            AL STANLANLLPTGTLLAFQ+LTP+FTNNG
Sbjct: 18  ATTEDAPDTPKPQPPQRSSSPLSQRALSQALTSTANLANLLPTGTLLAFQLLTPVFTNNG 77

Query: 92  QCDIATRAMTGLLLTVLALSCFLASFTDSFRGPNGQVYYGFSTMKGMWLFDYTGP----G 151
            CD ATR MT +LL +LA+SCFLASFTDS +  +GQVYYGF+T +GMWLFD  G      
Sbjct: 78  SCDAATRPMTIILLALLAVSCFLASFTDSVKLSDGQVYYGFATFRGMWLFDARGTIASGS 137

Query: 152 QVAV-DLTKYKLRFIDWVHAVLSVLVFGVVALRDKNVVICFYPKPSHEIQEVINILPIGV 211
           +V V DL+KY+L FIDWVH+VLSV VF  VALRDKNVV C YPKP HE+QEV++I+PIG+
Sbjct: 138 EVGVPDLSKYRLGFIDWVHSVLSVFVFAAVALRDKNVVGCLYPKPDHEVQEVLDIVPIGI 197

Query: 212 GFISSLLFLAFPTRRHGIGYPVSNAN 221
           G +  LLFL FPTRRHGIGYPV+  N
Sbjct: 198 GCLCGLLFLVFPTRRHGIGYPVTPGN 223

[Close]

BLAST of Spo18250.1 vs. TAIR (Arabidopsis)
Match: AT4G24310.1 (Protein of unknown function (DUF679))

HSP 1 Score: 233.4 bits (594), Expect = 1.400e-61
Identity = 115/208 (55.29%), Postives = 152/208 (73.08%), Query Frame = 1


		  
Query: 11  SSINQPSPTSDFDSDSDHHPTAIPNNIPDDRKPSMAQRALASTANLANLLPTGTLLAFQV 70
           SS+ Q +PTS     S     ++P       + ++  + L S ANLANLLPTGTLLAF +
Sbjct: 5   SSLTQRNPTS-----SQEQSESVPQLRRQTSQHAVMSQTLTSAANLANLLPTGTLLAFTL 64

Query: 71  LTPIFTNNGQCDIATRAMTGLLLTVLALSCFLASFTDSFRGPNGQVYYGFSTMKGMWLFD 130
           L P+FT+NG CD  T+ +T +LLT+L++SCFL+SFTDS +  +G VYYGF+T KGMW+FD
Sbjct: 65  LIPVFTSNGSCDYPTQVLTIVLLTLLSISCFLSSFTDSVKAEDGNVYYGFATRKGMWVFD 124

Query: 131 YTGPGQVAV-DLTKYKLRFIDWVHAVLSVLVFGVVALRDKNVVICFYPKPSHEIQEVINI 190
           Y  P  + + +L+KY++R IDW+HAVLSVLVFG VALRDKN V CFYP P  E ++V++I
Sbjct: 125 YPDPDGLGLPNLSKYRIRIIDWIHAVLSVLVFGAVALRDKNAVSCFYPAPEQETKKVLDI 184

Query: 191 LPIGVGFISSLLFLAFPTRRHGIGYPVS 218
           +P+GVG I  +LFL FP RRHGIGYPV+
Sbjct: 185 VPMGVGVICGMLFLVFPARRHGIGYPVT 207

[Close]

BLAST of Spo18250.1 vs. TAIR (Arabidopsis)
Match: AT3G02430.1 (Protein of unknown function (DUF679))

HSP 1 Score: 225.3 bits (573), Expect = 3.700e-59
Identity = 115/211 (54.50%), Postives = 151/211 (71.56%), Query Frame = 1


		  
Query: 14  NQPSPTSDFDSDSDHHPTAIPNNIPDDRKPSMAQRA----LASTANLANLLPTGTLLAFQ 73
           N  +P  + D  SD  P+    +    R+ SM+QRA    L S ANL+NLLPTGTLLAFQ
Sbjct: 8   NANTPAPELDELSDQTPS---ESRVLKRQMSMSQRAMSNTLTSAANLSNLLPTGTLLAFQ 67

Query: 74  VLTPIFTNNGQCDIATRAMTGLLLTVLALSCFLASFTDSFRGPNGQVYYGFSTMKGMWLF 133
           +LTP+FT+NG CD ATR +T +LL +LA SCF++SFTDS +  +G +Y+GF T KGMW+ 
Sbjct: 68  LLTPVFTSNGVCDHATRFLTAVLLFLLAASCFVSSFTDSVKADDGTIYFGFVTFKGMWVV 127

Query: 134 DYTGPGQVAV-DLTKYKLRFIDWVHAVLSVLVFGVVALRDKNVVICFYPKPSHEIQEVIN 193
           DY  P  + + DL KY++RF+DW+HA LSVLVFG VALRDK +  CFYP P  E + V++
Sbjct: 128 DYPDPSGLGLPDLAKYRMRFVDWIHATLSVLVFGAVALRDKYITDCFYPSPEAETKHVLD 187

Query: 194 ILPIGVGFISSLLFLAFPTRRHGIGYPVSNA 220
           I+P+GVG + SLLF+ FP RRHGIGY V+ +
Sbjct: 188 IVPVGVGVMCSLLFMVFPARRHGIGYLVTGS 215

[Close]

BLAST of Spo18250.1 vs. TAIR (Arabidopsis)
Match: AT5G46090.1 (Protein of unknown function (DUF679))

HSP 1 Score: 204.1 bits (518), Expect = 8.800e-53
Identity = 100/187 (53.48%), Postives = 138/187 (73.80%), Query Frame = 1


		  
Query: 36  NIPDDRKPSMAQRALA----STANLANLLPTGTLLAFQVLTPIFTNNGQCDIATRAMTGL 95
           ++PD  + +M Q+A+     +TANLANLLPTGT+LAFQ+L+PI TN G+CD+ +R MT L
Sbjct: 28  DLPDIERNTMMQKAIGKTFQTTANLANLLPTGTVLAFQILSPICTNVGRCDLTSRFMTAL 87

Query: 96  LLTVLALSCFLASFTDSFRGPNGQVYYGFSTMKGMWLFDYTGPGQVAVDLTK-YKLRFID 155
           L+++   SCF+ SFTDS++  NG V YGF+T+ G W+ D  G   +  +L+K YKLRFID
Sbjct: 88  LVSICGFSCFILSFTDSYKDLNGSVCYGFATIHGFWIID--GSATLPQELSKSYKLRFID 147

Query: 156 WVHAVLSVLVFGVVALRDKNVVICFYPKPSHEIQEVINILPIGVGFISSLLFLAFPTRRH 215
           +VHA++S LVFG V L D+NVV CFYP+PS E+ E++  LP+ VG   S++F  FPT RH
Sbjct: 148 FVHAIMSFLVFGAVVLFDQNVVNCFYPEPSAEVVELLTTLPVAVGVFCSMVFAKFPTTRH 207

Query: 216 GIGYPVS 218
           GIG+P+S
Sbjct: 208 GIGFPLS 212

[Close]

BLAST of Spo18250.1 vs. TAIR (Arabidopsis)
Match: AT4G18425.1 (Protein of unknown function (DUF679))

HSP 1 Score: 194.5 bits (493), Expect = 7.000e-50
Identity = 95/188 (50.53%), Postives = 133/188 (70.74%), Query Frame = 1


		  
Query: 36  NIPDDRKPSMAQRALA----STANLANLLPTGTLLAFQVLTPIFTNNGQCDIATRAMTGL 95
           + PD  + +  Q+A+     +TA+LANLLPTGT+LAFQ+L+PIF+N GQCD+ ++ MT  
Sbjct: 27  DFPDIERTTWIQKAIGQTFQTTAHLANLLPTGTVLAFQLLSPIFSNGGQCDLVSKIMTST 86

Query: 96  LLTVLALSCFLASFTDSFRGPNGQVYYGFSTMKGMWLFDYTGPGQVAVDLTK-YKLRFID 155
           L+ +   SCF+ SFTDS++  NG + YG +T+ G W+ D  G   +  +L+K YKLRFID
Sbjct: 87  LVAICGFSCFILSFTDSYKDKNGTICYGLATIHGFWIID--GSTTLPQELSKRYKLRFID 146

Query: 156 WVHAVLSVLVFGVVALRDKNVVICFYPKPSHEIQEVINILPIGVGFISSLLFLAFPTRRH 215
           +VHA +S+ VFG V L D+N V CF+P PS E  EV+  LP+GVG  SS+LF  FPT R+
Sbjct: 147 FVHAFMSLFVFGAVVLFDRNAVNCFFPSPSAEALEVLTALPVGVGVFSSMLFATFPTTRN 206

Query: 216 GIGYPVSN 219
           GIG+P+S+
Sbjct: 207 GIGFPLSS 212

[Close]

BLAST of Spo18250.1 vs. TAIR (Arabidopsis)
Match: AT3G21550.1 (DUF679 domain membrane protein 2)

HSP 1 Score: 148.3 bits (373), Expect = 5.700e-36
Identity = 73/172 (42.44%), Postives = 105/172 (61.05%), Query Frame = 1


		  
Query: 44  SMAQRALASTANLANLLPTGTLLAFQVLTPIFTNNGQCDIATRAMTGLLLTVLALSCFLA 103
           ++  R  +   +L  LLPTGT+  FQ L P+ TNNG C +  + +TG+L+ + A SC   
Sbjct: 7   AIRDRTYSGVGDLIKLLPTGTVFLFQFLNPVLTNNGHCLLINKYLTGVLIVICAFSCCFT 66

Query: 104 SFTDSFRGPNGQVYYGFSTMKGMWLFDYTGPGQVAVDLTKYKLRFIDWVHAVLSVLVFGV 163
            FTDS+R  +G V+YG +T+KG+W      P   +VDL+  +LR  D+VHA  S++VF V
Sbjct: 67  CFTDSYRTRDGYVHYGVATVKGLW------PDSSSVDLSSKRLRVGDFVHAFFSLIVFSV 126

Query: 164 VALRDKNVVICFYPKPSHEIQEVINILPIGVGFISSLLFLAFPTRRHGIGYP 216
           ++L D N V CFYP      +  + +LP  +G IS  +F  FP+RRHGIG P
Sbjct: 127 ISLLDANTVNCFYPGFGSAGKIFLMVLPPVIGVISGAVFTVFPSRRHGIGNP 172

The following BLAST results are available for this feature:

BLAST of Spo18250.1 vs. NCBI nr
BLAST of Spo18250.1 vs. UniProtKB/TrEMBL
BLAST of Spo18250.1 vs. ExPASy Swiss-Prot
BLAST of Spo18250.1 vs. TAIR (Arabidopsis)

BLAST of Spo18250.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902235272\|gb\|KNA23833.1\|	1.7e-122	100.	hypothetical protein SOVF_0206...	[more]
gi\|731326781\|ref\|XP_010674193.1\|	2.1e-80	70.9	PREDICTED: uncharacterized pro...	[more]
gi\|823136158\|ref\|XP_012467832.1\|	9.4e-65	69.1	PREDICTED: uncharacterized pro...	[more]
gi\|590682026\|ref\|XP_007041237.1\|	2.1e-64	65.3	Uncharacterized protein TCM_00...	[more]
gi\|661899616\|emb\|CDO97610.1\|	6.1e-64	63.5	unnamed protein product [Coffe...	[more]

BLAST of Spo18250.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RWK0_SPIOL	1.2e-122	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CJH9_BETVU	1.5e-80	70.9	Uncharacterized protein OS=Bet...	[more]
A0A0D2QGV6_GOSRA	6.6e-65	69.1	Uncharacterized protein OS=Gos...	[more]
A0A061E467_THECC	1.5e-64	65.3	Uncharacterized protein OS=The...	[more]
A0A068TMN8_COFCA	4.2e-64	63.5	Uncharacterized protein OS=Cof...	[more]

BLAST of Spo18250.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo18250.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT4G24310.1	1.4e-61	55.2	Protein of unknown function (D...	[more]
AT3G02430.1	3.7e-59	54.5	Protein of unknown function (D...	[more]
AT5G46090.1	8.8e-53	53.4	Protein of unknown function (D...	[more]
AT4G18425.1	7.0e-50	50.5	Protein of unknown function (D...	[more]
AT3G21550.1	5.7e-36	42.4	DUF679 domain membrane protein...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007770	Protein of unknown function DUF679	PFAM	PF05078	DUF679	coord: 52..214 score: 1.0
None	No IPR available	PANTHER	PTHR31621	FAMILY NOT NAMED	coord: 1..218 score: 5.5E
None	No IPR available	PANTHER	PTHR31621:SF10	F16B3.6 PROTEIN	coord: 1..218 score: 5.5E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16587	0.66	Barchart \| Table
Spo08419	0.65	Barchart \| Table
Spo09757	0.65	Barchart \| Table