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Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTTGCTCCTCTCATAAAAAAAAACAAGAAAAACACAGCCATATATTTAGATTCATTGGATTTCAATCATATCATTATTTTTCATTGTTGGTTTATAAATAAGCCTGAAAATCAAGTTCAAGTTGAAGAATTAAAAAAAATGGAGATAATTGCGAATAATAAGCGATGGTCGCTCCAAGGAATGACAGCCCTTGTTACGGGTGGTACAAAAGGCATCGGGTACCAACTATTCAACTAAGTTACTAAACTCGTCTTATTTTACTTTTTATTCCTCTTGTAATTCCCGCTCCTTGTTTAACTTCGTTGTTAGATCGAGCATCTACATTGTTGTCTGTTGAGCTAGCAGATTCCGTGAAAACATCTGTCTCGTGTTTGAAATTGTTATCTTCATATCTTATTTACAATTGTTTTCGGAATTTAACTTAACAAGTTGTTCATATTTGATAGAGTATAAAACTAAATTTGGGGCTTCAACTATCAGTTTAAACTTTGGTTGAATTTTGATTGAGTACTTGAGTTAATTATTTGACATGGTATCAAAGCCAACGTGACACAAAGGTCACGAGTTCAAATCTCATCCACCCCCTTCATTCAAAGTGGAGTATGTAGCGTTGGGATGGGTAAGTCCATGCTGCAACCATACATTAAGCCCAAAAGGTTGGGCTTTCACGTGAGGGGGTGTGATAGAATCTATTACTATATACTAAAAGAGACACCAGGAATGACACGTGTCAATTCCTGGTGCGATTTTTTCCCGCAAAAAACCACTTTCCCAAAAGAGAGTATCTGTTTTATTTTATTTTTATTTTCCACTTTTTTTATAACTATTTATGTATGGAAATAAATTCTATTTTGTAAATTATGGAAATAATAGATACGACGTAATAATAATTATTCTAAATTTGTAATATTTTAGTCAAATCGCTATATTAATAATGGAAAATATATCACTCAATATTTTGGTCAAATTGTTATATTAGCCTTTCAAATATGCATATTAGATGAATAAATTTAAACGAGTATGTTAAAAATGTTATAACTATACAGTAGTTTGAAAAATATTCAGTTAAATATTTAGTGAAAAAAATATCAAAATCCGTGCGTGCACGGGATTTAATCTAGTTTAAAACTAATTTTGGCCTCTTGGGACTTCAACTAATAGCTTAACTTTTTGATTGAGTTGGTCCTTGGGTAATTAATTTTTGAGATTTAATTTTTTGAGTGGAAATTTGTTAAGAAGAGGTAAAGTAAATTTATTTGCAGGCATGCTATTGTTGAGGAACTAGTAGGACTAGGAGCAATAGTGCATACATGTGCTAGAAACGAAGCCGAACTTGATGCTTGCATGCTAGCTTGGAAAGCTAAAGGGTTGCCTATTACTGGCTCCATTTGTGATGTTTCGTCTCGACCTCAAAGAGAGAAGTTAATGGATACACTCAAATCTATCTTTAATGGAAAATTAGATATACTTGTAAGCCCCCGTTCTCTACCTCACCTCGAAATTTTTTTACTTGCAATACTTTAACTTTTGCATTATTTTATATTCACATATCACATACTCTTTTTATGGATGATTAATGATTGATGTTATGCATTGATAAATCTTAGGAGTAAGGACTATTTACACCACTTGGTGATAGACAAAAAAGAAATATCTTGTATGACCTCTAGTGAACACCCAAGTGACAATATATTGAGCAATCCGACCTCTAAACTTAATTACAATCAGTAGCGAATTTTCCTTGTGAATAGGGTGGGCCCGGCCCCCGGAAGAAAAATTACGTAGTGTATTACTTAATTTTTTTAATAGTCTTCTGATAAAATTGTTCAAGATCCGTCACTAGTTACAACACTTATATGTGTCTTTGACCTCAGGTGAACAATGCAGGTGGTGCTACAAAAGCCGAAACCGTGGATGCAACGCCGGAATATTACTCGTTGTTAATGGCCACAAATTTTGAGTCAGTATATCATCTATCTCAACTCGCATATCCACTGTTCAAGGCCTCAGGACAAGGCAACATCGTCTTTATTTCATCTGTGGCTAGTATCGTGGCAGTTGATGTTGGATCTGTTTATGGGCCAGCAAAAGGTACGCAAATTCTTAAACTCTTGGGACTCTTTTTTTTGGGGGGGCCAAGGAGAAGTCATTCCAGGAGGTGGATTAAGGGAAACCAATTGTTTCTCCCTTCCGGATATGAGTTTGGTGAGATTTGACCCTTGACCTTATAGCTTAGAAGTCCGATAGTTAGTCAACTACTTTAACCTTATATAAACATGATAGAGATAGAATCTCTTAGGATATTTTATGTATAATAGAATGCTACTAGCATTAGGTTTCGTAATACAATTAGGACTAATGTTGTAACCTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATNGAGTTTCACAATATCTATTCGAACAAATAAATTTGATCCAATTTTTAGTTGCATTTTGTTTATCATTTTGCAGGAGCAATGAACCAACTGGCAAAGAATTTGGCATGTGAGTGGGCAAAAGATAATATCCGGGTTAATTCTGTTGCTCCCGGAGTAATTTGGTCTTCTATGACCGAGGTATTCATTTCATTTCCCGCTCCCTATCACAAAATATCTATTGATAGAGTTACGAGAAAGCTTAATTGTATTGATGTTTGCAATGAAGTATTTATACAAGCCTAAGAATATTACAAAGTCAACAATAATATCAATTGCTAAAATAACAAAGATATTGTACATAATTAGAAGATATTATAAAATCAAATCTATCACTAATATGTTAAGTATATTTACATAATCAGTAATAATATAAAGGATATATTATCCTTTACATTATGATATTATCTCAATACGCCCCCGCAAGATGGACGTCCGAGAAGGGAAAGTCCAATCTTGAGAAATGGTAAGTGGTGATTGATTGCTTGAATGGCAGTTGCTTGACTTGCTTCGAGGAGACAAAATGATGTGGATGATGATGATTGATGACCATACATGATTTGCTCCTCTCATAAAAAAAAACAAGAAAAACACAGCCATATATTTAGATTCATTGGATTTCAATCATATCATTATTTTTCATTGTTGGTTTATAAATAAGCCTGAAAATCAAGTTCAAGTTGAAGAATTAAAAAAAATGGAGATAATTGCGAATAATAAGCGATGGTCGCTCCAAGGAATGACAGCCCTTGTTACGGGTGGTACAAAAGGCATCGGGCATGCTATTGTTGAGGAACTAGTAGGACTAGGAGCAATAGTGCATACATGTGCTAGAAACGAAGCCGAACTTGATGCTTGCATGCTAGCTTGGAAAGCTAAAGGGTTGCCTATTACTGGCTCCATTTGTGATGTTTCGTCTCGACCTCAAAGAGAGAAGTTAATGGATACACTCAAATCTATCTTTAATGGAAAATTAGATATACTTGTGAACAATGCAGGTGGTGCTACAAAAGCCGAAACCGTGGATGCAACGCCGGAATATTACTCGTTGTTAATGGCCACAAATTTTGAGTCAGTATATCATCTATCTCAACTCGCATATCCACTGTTCAAGGCCTCAGGACAAGGCAACATCGTCTTTATTTCATCTGTGGCTAGTATCGTGGCAGTTGATGTTGGATCTGTTTATGGGCCAGCAAAAGGAGCAATGAACCAACTGGCAAAGAATTTGGCATGTGAGTGGGCAAAAGATAATATCCGGGTTAATTCTGTTGCTCCCGGAGTAATTTGGTCTTCTATGACCGAGTTGCTTGACTTGCTTCGAGGAGACAAAATGATGTGGATGATGATGATTGATGACCATACATGA ATGGAGATAATTGCGAATAATAAGCGATGGTCGCTCCAAGGAATGACAGCCCTTGTTACGGGTGGTACAAAAGGCATCGGGCATGCTATTGTTGAGGAACTAGTAGGACTAGGAGCAATAGTGCATACATGTGCTAGAAACGAAGCCGAACTTGATGCTTGCATGCTAGCTTGGAAAGCTAAAGGGTTGCCTATTACTGGCTCCATTTGTGATGTTTCGTCTCGACCTCAAAGAGAGAAGTTAATGGATACACTCAAATCTATCTTTAATGGAAAATTAGATATACTTGTGAACAATGCAGGTGGTGCTACAAAAGCCGAAACCGTGGATGCAACGCCGGAATATTACTCGTTGTTAATGGCCACAAATTTTGAGTCAGTATATCATCTATCTCAACTCGCATATCCACTGTTCAAGGCCTCAGGACAAGGCAACATCGTCTTTATTTCATCTGTGGCTAGTATCGTGGCAGTTGATGTTGGATCTGTTTATGGGCCAGCAAAAGGAGCAATGAACCAACTGGCAAAGAATTTGGCATGTGAGTGGGCAAAAGATAATATCCGGGTTAATTCTGTTGCTCCCGGAGTAATTTGGTCTTCTATGACCGAGTTGCTTGACTTGCTTCGAGGAGACAAAATGATGTGGATGATGATGATTGATGACCATACATGA MEIIANNKRWSLQGMTALVTGGTKGIGHAIVEELVGLGAIVHTCARNEAELDACMLAWKAKGLPITGSICDVSSRPQREKLMDTLKSIFNGKLDILVNNAGGATKAETVDATPEYYSLLMATNFESVYHLSQLAYPLFKASGQGNIVFISSVASIVAVDVGSVYGPAKGAMNQLAKNLACEWAKDNIRVNSVAPGVIWSSMTELLDLLRGDKMMWMMMIDDHT Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo18290.1 vs. NCBI nr
Match: gi|902239283|gb|KNA25545.1| (hypothetical protein SOVF_004770 [Spinacia oleracea]) HSP 1 Score: 359.4 bits (921), Expect = 4.600e-96 Identity = 186/203 (91.63%), Postives = 187/203 (92.12%), Query Frame = 1
BLAST of Spo18290.1 vs. NCBI nr
Match: gi|731329639|ref|XP_010675701.1| (PREDICTED: tropinone reductase homolog At1g07440-like isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 330.9 bits (847), Expect = 1.800e-87 Identity = 163/203 (80.30%), Postives = 179/203 (88.18%), Query Frame = 1
BLAST of Spo18290.1 vs. NCBI nr
Match: gi|731329641|ref|XP_010675702.1| (PREDICTED: tropinone reductase homolog At1g07440-like isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 276.2 bits (705), Expect = 5.100e-71 Identity = 142/203 (69.95%), Postives = 154/203 (75.86%), Query Frame = 1
BLAST of Spo18290.1 vs. NCBI nr
Match: gi|702480646|ref|XP_010033096.1| (PREDICTED: tropinone reductase homolog At1g07440-like [Eucalyptus grandis]) HSP 1 Score: 275.0 bits (702), Expect = 1.100e-70 Identity = 135/207 (65.22%), Postives = 161/207 (77.78%), Query Frame = 1
BLAST of Spo18290.1 vs. NCBI nr
Match: gi|870853297|gb|KMT05178.1| (hypothetical protein BVRB_7g173250 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 273.1 bits (697), Expect = 4.300e-70 Identity = 134/199 (67.34%), Postives = 156/199 (78.39%), Query Frame = 1
BLAST of Spo18290.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S1C2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_004770 PE=4 SV=1) HSP 1 Score: 359.4 bits (921), Expect = 3.200e-96 Identity = 186/203 (91.63%), Postives = 187/203 (92.12%), Query Frame = 1
BLAST of Spo18290.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CKX4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g088200 PE=4 SV=1) HSP 1 Score: 330.9 bits (847), Expect = 1.200e-87 Identity = 163/203 (80.30%), Postives = 179/203 (88.18%), Query Frame = 1
BLAST of Spo18290.1 vs. UniProtKB/TrEMBL
Match: A0A059AFL7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02011 PE=4 SV=1) HSP 1 Score: 275.0 bits (702), Expect = 8.000e-71 Identity = 135/207 (65.22%), Postives = 161/207 (77.78%), Query Frame = 1
BLAST of Spo18290.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BYZ8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g173250 PE=4 SV=1) HSP 1 Score: 273.1 bits (697), Expect = 3.000e-70 Identity = 134/199 (67.34%), Postives = 156/199 (78.39%), Query Frame = 1
BLAST of Spo18290.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BVM7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g173240 PE=4 SV=1) HSP 1 Score: 272.3 bits (695), Expect = 5.200e-70 Identity = 135/199 (67.84%), Postives = 156/199 (78.39%), Query Frame = 1
BLAST of Spo18290.1 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1) HSP 1 Score: 258.5 bits (659), Expect = 6.900e-68 Identity = 120/197 (60.91%), Postives = 150/197 (76.14%), Query Frame = 1
BLAST of Spo18290.1 vs. ExPASy Swiss-Prot
Match: TRN1_COCOF (Tropinone reductase OS=Cochlearia officinalis GN=TR PE=1 SV=1) HSP 1 Score: 256.9 bits (655), Expect = 2.000e-67 Identity = 126/192 (65.62%), Postives = 153/192 (79.69%), Query Frame = 1
BLAST of Spo18290.1 vs. ExPASy Swiss-Prot
Match: TRNH4_ARATH (Tropinone reductase homolog At2g29170 OS=Arabidopsis thaliana GN=At2g29170 PE=3 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 2.600e-67 Identity = 126/196 (64.29%), Postives = 151/196 (77.04%), Query Frame = 1
BLAST of Spo18290.1 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 5.000e-66 Identity = 120/198 (60.61%), Postives = 154/198 (77.78%), Query Frame = 1
BLAST of Spo18290.1 vs. ExPASy Swiss-Prot
Match: SAG13_ARATH (Senescence-associated protein 13 OS=Arabidopsis thaliana GN=SAG13 PE=1 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 1.600e-64 Identity = 122/199 (61.31%), Postives = 150/199 (75.38%), Query Frame = 1
BLAST of Spo18290.1 vs. TAIR (Arabidopsis)
Match: AT1G07440.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 258.5 bits (659), Expect = 3.900e-69 Identity = 120/197 (60.91%), Postives = 150/197 (76.14%), Query Frame = 1
BLAST of Spo18290.1 vs. TAIR (Arabidopsis)
Match: AT2G29350.1 (senescence-associated gene 13) HSP 1 Score: 247.3 bits (630), Expect = 9.000e-66 Identity = 122/199 (61.31%), Postives = 150/199 (75.38%), Query Frame = 1
BLAST of Spo18290.1 vs. TAIR (Arabidopsis)
Match: AT2G29290.2 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 246.9 bits (629), Expect = 1.200e-65 Identity = 124/207 (59.90%), Postives = 155/207 (74.88%), Query Frame = 1
BLAST of Spo18290.1 vs. TAIR (Arabidopsis)
Match: AT5G06060.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 245.7 bits (626), Expect = 2.600e-65 Identity = 119/199 (59.80%), Postives = 150/199 (75.38%), Query Frame = 1
BLAST of Spo18290.1 vs. TAIR (Arabidopsis)
Match: AT2G29150.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 245.4 bits (625), Expect = 3.400e-65 Identity = 122/200 (61.00%), Postives = 152/200 (76.00%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo18290.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo18290.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo18290.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo18290.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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