Spo18361 (gene)

Overview
NameSpo18361
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionProtein LHCP TRANSLOCATION DEFECT (Precursor)
Locationchr4 : 76789575 .. 76791214 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAATCTCATGTTCTATCCAATTTGCAATAAATTCAAGAGCTTCAACCTCTCATTCAACTTGTCGTGTGTTGAACTTGCGAAATGGGTTCCTGTGCATCCCCAGAACCGTAAATGGGACCACCACTAGAAGCACCACCAAGCTTGGTCCCAGTAACGGTGGCAGAGCCAAATGTTGGTTTAGCTTTAATGCTAAAGGTGCTGGTATTTATGGCAGCCAATCTCGTGATGATTTTGATAGAGATGACGTTGAACAGGCATGTTTTTTGGGTTTTGATAATTTTCTCATAATTCTCTGTTAATTGTTGAAATGCTGGTTCTGCTGCTGTTTTTATGTTTCAAGAAATTAAATTTCCTGTATTGGATTTTGATTTTTCGTGAGTTTTGGACTTTGAGTAGGACATGTTTGCAGGTGTAGTTTTGTGCATATGTCAATGCCTGGATGGTACTACCCTGGTACCCTTCAATCCGGAATTAGTTATCACGATGAACCAATGTTTAGCGTAATTTGAATGAGTAATGTGACAACTAAAGCTTGCCAGAAGTAGTATTTTTTTCTTAGTCTTGGTTATTCTGTGTGGCCGTGTGTAATCAGGTCTAGTACAATTTTGCAAGTAATAGAGGAAAATATGTGAATAAATCATGTCTGGTTGAGTTTGAAGGTTACTTCATCGAGTTAGAAAACTAGTACTCAGTGTCACTTCCCATCACAGACCTATGGACCTTAAAGCGTACAGATACGAGTAATCATGGTAATGTAGATAGGACATTGCGTGATCTTGAACGAACAAGGGAGACATGGTAGGATGAGGAATATGATGAAGCTAATAATCTAGTTGCCTATATCTCACTTTTTGTTGGTGAGCGAGCTACTAATGTGTATTCCGCTTACAACTAAGTTTTTGTTAGCCTTTTGAATCGGACATCATTTCCGTCTTTCAAGGTCATCCCTTAAATCTACTTCAATATCACCAAACACATATTTTGGATAAAGGGACTAGTATATTTCCAACTCATGTATGGTAAAACCGGTTGTACCTTGCAGTGCTGAATAAAAGATGAATAACTAACCAAGTAGGTATTGCAGAGAAAATAACCGGTAAACAAGGAGTGTATGGAGTATCAATCTTTTAGCTGCAAATCAATGAGTGGAAGATGTCCAAATCAGAATTTGGCAGATTAAGTGAACTCATCCCTCATCTGCATCAAAGCAGTATAACTGTATTAAGCAAAAAAAATACAAAACTTTATTCATTATAGAAGTAGAAATTATGATGTTTTTTTCTCAAATATCTGTGATTGTTCACACTTTTGTTTACATGTATGCATATAGTAGAGACTTATCTAGAAAATTTTGTTGCGTTGTTCATTGATGTTGCAGTACTTCAACTACATGGGAATGCTTGCGGTGGAGGGTACATATGATAAGATGGAAGCATTGTTGAGCCAGAACATCCACCCTGTAGATATCCTACTGTTAATGGCTGCTTCAGAGGGTGACAAACCCAAAATTGAAGAACTGTTAGGTGCCGGAGCTAATTATGACGTACTGGATGCTGACGGCAGAACTGCCCTTGATAGAGCTAACGATGAGATTAGAGATTTCATTCTCAATTTCAAACCTCAAAAGGCTTAA

mRNA sequence

ATGGCTTCAATCTCATGTTCTATCCAATTTGCAATAAATTCAAGAGCTTCAACCTCTCATTCAACTTGTCGTGTGTTGAACTTGCGAAATGGGTTCCTGTGCATCCCCAGAACCGTAAATGGGACCACCACTAGAAGCACCACCAAGCTTGGTCCCAGTAACGGTGGCAGAGCCAAATGTTGGTTTAGCTTTAATGCTAAAGGTGCTGGTATTTATGGCAGCCAATCTCGTGATGATTTTGATAGAGATGACGTTGAACAGTACTTCAACTACATGGGAATGCTTGCGGTGGAGGGTACATATGATAAGATGGAAGCATTGTTGAGCCAGAACATCCACCCTGTAGATATCCTACTGTTAATGGCTGCTTCAGAGGGTGACAAACCCAAAATTGAAGAACTGTTAGGTGCCGGAGCTAATTATGACGTACTGGATGCTGACGGCAGAACTGCCCTTGATAGAGCTAACGATGAGATTAGAGATTTCATTCTCAATTTCAAACCTCAAAAGGCTTAA

Coding sequence (CDS)

ATGGCTTCAATCTCATGTTCTATCCAATTTGCAATAAATTCAAGAGCTTCAACCTCTCATTCAACTTGTCGTGTGTTGAACTTGCGAAATGGGTTCCTGTGCATCCCCAGAACCGTAAATGGGACCACCACTAGAAGCACCACCAAGCTTGGTCCCAGTAACGGTGGCAGAGCCAAATGTTGGTTTAGCTTTAATGCTAAAGGTGCTGGTATTTATGGCAGCCAATCTCGTGATGATTTTGATAGAGATGACGTTGAACAGTACTTCAACTACATGGGAATGCTTGCGGTGGAGGGTACATATGATAAGATGGAAGCATTGTTGAGCCAGAACATCCACCCTGTAGATATCCTACTGTTAATGGCTGCTTCAGAGGGTGACAAACCCAAAATTGAAGAACTGTTAGGTGCCGGAGCTAATTATGACGTACTGGATGCTGACGGCAGAACTGCCCTTGATAGAGCTAACGATGAGATTAGAGATTTCATTCTCAATTTCAAACCTCAAAAGGCTTAA

Protein sequence

MASISCSIQFAINSRASTSHSTCRVLNLRNGFLCIPRTVNGTTTRSTTKLGPSNGGRAKCWFSFNAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLLMAASEGDKPKIEELLGAGANYDVLDADGRTALDRANDEIRDFILNFKPQKA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo18361.1Spo18361.1mRNA


Homology
[Close]
BLAST of Spo18361.1 vs. NCBI nr
Match: gi|902189171|gb|KNA11301.1| (hypothetical protein SOVF_136470 [Spinacia oleracea])

HSP 1 Score: 343.2 bits (879), Expect = 2.600e-91
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1 

		  

Query: 1   MASISCSIQFAINSRASTSHSTCRVLNLRNGFLCIPRTVNGTTTRSTTKLGPSNGGRAKC 60
           MASISCSIQFAINSRASTSHSTCRVLNLRNGFLCIPRTVNGTTTRSTTKLGPSNGGRAKC
Sbjct: 1   MASISCSIQFAINSRASTSHSTCRVLNLRNGFLCIPRTVNGTTTRSTTKLGPSNGGRAKC 60

Query: 61  WFSFNAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLL 120
           WFSFNAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLL
Sbjct: 61  WFSFNAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLL 120

Query: 121 MAASEGDKPKIEELLGAGANYDVLDADGRTALDRANDEIRDFILNFKPQKA 172
           MAASEGDKPKIEELLGAGANYDVLDADGRTALDRANDEIRDFILNFKPQKA
Sbjct: 121 MAASEGDKPKIEELLGAGANYDVLDADGRTALDRANDEIRDFILNFKPQKA 171
[Close]
BLAST of Spo18361.1 vs. NCBI nr
Match: gi|731364843|ref|XP_010694198.1| (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 246.5 bits (628), Expect = 3.300e-62
Identity = 131/174 (75.29%), Postives = 146/174 (83.91%), Query Frame = 1 

		  

Query: 1   MASISCS--IQFAINSRAST-SHSTCRVLNLRNGFLCIPRTVNGTTTRSTTKLGPSNGGR 60
           MAS+SCS  IQ  INSR S+ SHS      LRNGF+ +P+ +N    + T KLGPSNG R
Sbjct: 1   MASLSCSTSIQLTINSRTSSCSHSAS---TLRNGFVGLPKNINFKPIK-TAKLGPSNGSR 60

Query: 61  AKCWFSFNAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDI 120
            KCWF FNA+ AG+YGSQSRDDFDRDDVEQYFNYMGMLAVEG+YDKMEALL+Q+IHPVDI
Sbjct: 61  VKCWFRFNAETAGVYGSQSRDDFDRDDVEQYFNYMGMLAVEGSYDKMEALLNQDIHPVDI 120

Query: 121 LLLMAASEGDKPKIEELLGAGANYDVLDADGRTALDRANDEIRDFILNFKPQKA 172
           LLLMA+SEGDKPKIEELL AGANYDV DADGRTALDRA+DEI+DFILN K QKA
Sbjct: 121 LLLMASSEGDKPKIEELLKAGANYDVKDADGRTALDRASDEIKDFILNCKSQKA 170
[Close]
BLAST of Spo18361.1 vs. NCBI nr
Match: gi|388517805|gb|AFK46964.1| (unknown [Lotus japonicus])

HSP 1 Score: 226.1 bits (575), Expect = 4.700e-56
Identity = 121/175 (69.14%), Postives = 135/175 (77.14%), Query Frame = 1 

		  

Query: 2   ASISCSIQFAINSRASTSHSTCRVLNLRNGFLCIPRTVNGTTTRSTTKLGPSNGGRAKCW 61
           +SI+C     I SR ++  S    LNL +GFL I R V     R T+ +GPSNG +A CW
Sbjct: 3   SSIACITHQPITSRLNSLPSPVSSLNLASGFLGIRRRVG--CLRLTSSIGPSNGSKATCW 62

Query: 62  FSF-----NAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVD 121
           F F     +A+GAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQ IHPVD
Sbjct: 63  FRFGKNGVDAEGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQKIHPVD 122

Query: 122 ILLLMAASEGDKPKIEELLGAGANYDVLDADGRTALDRANDEIRDFILNFKPQKA 172
           ILLL+AASEGD PKIEELL AGA YDV D DGRTALDRANDE++DFILNF  Q+A
Sbjct: 123 ILLLLAASEGDMPKIEELLRAGAKYDVRDGDGRTALDRANDEVKDFILNFSVQRA 175
[Close]
BLAST of Spo18361.1 vs. NCBI nr
Match: gi|351723883|ref|NP_001238318.1| (uncharacterized protein LOC100499940 [Glycine max])

HSP 1 Score: 219.5 bits (558), Expect = 4.400e-54
Identity = 121/178 (67.98%), Postives = 136/178 (76.40%), Query Frame = 1 

		  

Query: 1   MASISCSIQFAINSRASTSHSTCRVL--NLRNGFLCIPRTVNGTTTRSTTKLGPSNGGRA 60
           MASISC     I S+ + + S+  V   NL + FL   + V G  + ++  +GPSNG +A
Sbjct: 1   MASISCITHHPITSKLNNAFSSPHVSASNLASRFLGTRKRV-GLHSLTSRIIGPSNGSKA 60

Query: 61  KCWFSF-----NAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIH 120
            CWF F     +AKGAGIYGSQ RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIH
Sbjct: 61  TCWFRFGKNGVDAKGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIH 120

Query: 121 PVDILLLMAASEGDKPKIEELLGAGANYDVLDADGRTALDRANDEIRDFILNFKPQKA 172
           PVDILLL+AASE DKPKIEELL AGA YDV DADGRTALDRA DEI+DFILNF  Q+A
Sbjct: 121 PVDILLLLAASESDKPKIEELLRAGAKYDVKDADGRTALDRATDEIKDFILNFSVQRA 177
[Close]
BLAST of Spo18361.1 vs. NCBI nr
Match: gi|225461044|ref|XP_002281441.1| (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Vitis vinifera])

HSP 1 Score: 215.3 bits (547), Expect = 8.200e-53
Identity = 119/177 (67.23%), Postives = 135/177 (76.27%), Query Frame = 1 

		  

Query: 1   MASISCSIQFAINSRASTSHSTCRVLNLRNGFLCIPRTVNGTTTRSTTKLGPSNGGRAKC 60
           MASI C+      S+   S S   +   +   L IPR ++ +T    T+LGPSNG RA C
Sbjct: 1   MASIPCTTHLLFTSKPQISPSNPPIFTSQ--LLGIPRKLSWSTP---TRLGPSNGSRATC 60

Query: 61  WFSF-----NAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPV 120
           WF F     +A+GAGIYGSQ+RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPV
Sbjct: 61  WFRFGNRGVDAEGAGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPV 120

Query: 121 DILLLMAASEGDKPKIEELLGAGANYDVLDADGRTALDR-ANDEIRDFILNFKPQKA 172
           DILL+MAASEGD+PKIEELL AGA+Y V DADGRTAL+R ANDEI+D ILNF  QKA
Sbjct: 121 DILLMMAASEGDQPKIEELLRAGASYTVKDADGRTALERAANDEIKDLILNFSTQKA 172
[Close]
BLAST of Spo18361.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXQ6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_136470 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 1.800e-91
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1 

		  

Query: 1   MASISCSIQFAINSRASTSHSTCRVLNLRNGFLCIPRTVNGTTTRSTTKLGPSNGGRAKC 60
           MASISCSIQFAINSRASTSHSTCRVLNLRNGFLCIPRTVNGTTTRSTTKLGPSNGGRAKC
Sbjct: 1   MASISCSIQFAINSRASTSHSTCRVLNLRNGFLCIPRTVNGTTTRSTTKLGPSNGGRAKC 60

Query: 61  WFSFNAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLL 120
           WFSFNAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLL
Sbjct: 61  WFSFNAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLL 120

Query: 121 MAASEGDKPKIEELLGAGANYDVLDADGRTALDRANDEIRDFILNFKPQKA 172
           MAASEGDKPKIEELLGAGANYDVLDADGRTALDRANDEIRDFILNFKPQKA
Sbjct: 121 MAASEGDKPKIEELLGAGANYDVLDADGRTALDRANDEIRDFILNFKPQKA 171
[Close]
BLAST of Spo18361.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEH1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g091580 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.300e-62
Identity = 131/174 (75.29%), Postives = 146/174 (83.91%), Query Frame = 1 

		  

Query: 1   MASISCS--IQFAINSRAST-SHSTCRVLNLRNGFLCIPRTVNGTTTRSTTKLGPSNGGR 60
           MAS+SCS  IQ  INSR S+ SHS      LRNGF+ +P+ +N    + T KLGPSNG R
Sbjct: 1   MASLSCSTSIQLTINSRTSSCSHSAS---TLRNGFVGLPKNINFKPIK-TAKLGPSNGSR 60

Query: 61  AKCWFSFNAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDI 120
            KCWF FNA+ AG+YGSQSRDDFDRDDVEQYFNYMGMLAVEG+YDKMEALL+Q+IHPVDI
Sbjct: 61  VKCWFRFNAETAGVYGSQSRDDFDRDDVEQYFNYMGMLAVEGSYDKMEALLNQDIHPVDI 120

Query: 121 LLLMAASEGDKPKIEELLGAGANYDVLDADGRTALDRANDEIRDFILNFKPQKA 172
           LLLMA+SEGDKPKIEELL AGANYDV DADGRTALDRA+DEI+DFILN K QKA
Sbjct: 121 LLLMASSEGDKPKIEELLKAGANYDVKDADGRTALDRASDEIKDFILNCKSQKA 170
[Close]
BLAST of Spo18361.1 vs. UniProtKB/TrEMBL
Match: I3T372_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.300e-56
Identity = 121/175 (69.14%), Postives = 135/175 (77.14%), Query Frame = 1 

		  

Query: 2   ASISCSIQFAINSRASTSHSTCRVLNLRNGFLCIPRTVNGTTTRSTTKLGPSNGGRAKCW 61
           +SI+C     I SR ++  S    LNL +GFL I R V     R T+ +GPSNG +A CW
Sbjct: 3   SSIACITHQPITSRLNSLPSPVSSLNLASGFLGIRRRVG--CLRLTSSIGPSNGSKATCW 62

Query: 62  FSF-----NAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVD 121
           F F     +A+GAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQ IHPVD
Sbjct: 63  FRFGKNGVDAEGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQKIHPVD 122

Query: 122 ILLLMAASEGDKPKIEELLGAGANYDVLDADGRTALDRANDEIRDFILNFKPQKA 172
           ILLL+AASEGD PKIEELL AGA YDV D DGRTALDRANDE++DFILNF  Q+A
Sbjct: 123 ILLLLAASEGDMPKIEELLRAGAKYDVRDGDGRTALDRANDEVKDFILNFSVQRA 175
[Close]
BLAST of Spo18361.1 vs. UniProtKB/TrEMBL
Match: A0A0B2QED9_GLYSO (Protein LHCP TRANSLOCATION DEFECT OS=Glycine soja GN=glysoja_042552 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.000e-54
Identity = 121/178 (67.98%), Postives = 136/178 (76.40%), Query Frame = 1 

		  

Query: 1   MASISCSIQFAINSRASTSHSTCRVL--NLRNGFLCIPRTVNGTTTRSTTKLGPSNGGRA 60
           MASISC     I S+ + + S+  V   NL + FL   + V G  + ++  +GPSNG +A
Sbjct: 1   MASISCITHHPITSKLNNAFSSPHVSASNLASRFLGTRKRV-GLHSLTSRIIGPSNGSKA 60

Query: 61  KCWFSF-----NAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIH 120
            CWF F     +AKGAGIYGSQ RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIH
Sbjct: 61  TCWFRFGKNGVDAKGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIH 120

Query: 121 PVDILLLMAASEGDKPKIEELLGAGANYDVLDADGRTALDRANDEIRDFILNFKPQKA 172
           PVDILLL+AASE DKPKIEELL AGA YDV DADGRTALDRA DEI+DFILNF  Q+A
Sbjct: 121 PVDILLLLAASESDKPKIEELLRAGAKYDVKDADGRTALDRATDEIKDFILNFSVQRA 177
[Close]
BLAST of Spo18361.1 vs. UniProtKB/TrEMBL
Match: C6SYF4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G102100 PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.000e-54
Identity = 121/178 (67.98%), Postives = 136/178 (76.40%), Query Frame = 1 

		  

Query: 1   MASISCSIQFAINSRASTSHSTCRVL--NLRNGFLCIPRTVNGTTTRSTTKLGPSNGGRA 60
           MASISC     I S+ + + S+  V   NL + FL   + V G  + ++  +GPSNG +A
Sbjct: 1   MASISCITHHPITSKLNNAFSSPHVSASNLASRFLGTRKRV-GLHSLTSRIIGPSNGSKA 60

Query: 61  KCWFSF-----NAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIH 120
            CWF F     +AKGAGIYGSQ RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIH
Sbjct: 61  TCWFRFGKNGVDAKGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIH 120

Query: 121 PVDILLLMAASEGDKPKIEELLGAGANYDVLDADGRTALDRANDEIRDFILNFKPQKA 172
           PVDILLL+AASE DKPKIEELL AGA YDV DADGRTALDRA DEI+DFILNF  Q+A
Sbjct: 121 PVDILLLLAASESDKPKIEELLRAGAKYDVKDADGRTALDRATDEIKDFILNFSVQRA 177
[Close]
BLAST of Spo18361.1 vs. ExPASy Swiss-Prot
Match: LTD_ARATH (Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana GN=LTD PE=1 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.200e-48
Identity = 112/175 (64.00%), Postives = 129/175 (73.71%), Query Frame = 1 

		  

Query: 3   SISCSIQFAINSRASTSHSTCRVLNLRNGFLCIPRTVNGTTTRSTTKLGPSNGGRAKCWF 62
           S SC+   A  S  ST+ S+ R+L+ R  FL    T N        +LGPSNG R  CWF
Sbjct: 7   SFSCAPSLA-TSLFSTTSSSPRLLSSR--FL---GTRNLKLRIRPARLGPSNGSRTTCWF 66

Query: 63  SF-----NAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDI 122
            F     +A+ AGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTY KMEALL+ NIHPVDI
Sbjct: 67  KFGKNGVDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDI 126

Query: 123 LLLMAASEGDKPKIEELLGAGANYDVLDADGRTALDRAN-DEIRDFILNFKPQKA 172
           LL++AA+EGD+PKIEELL AGA+Y V DADGRTA+DRAN +EIRD IL +  QKA
Sbjct: 127 LLMLAATEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175
[Close]
BLAST of Spo18361.1 vs. ExPASy Swiss-Prot
Match: LTD_ORYSI (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica GN=LTD PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.200e-45
Identity = 101/172 (58.72%), Postives = 124/172 (72.09%), Query Frame = 1 

		  

Query: 1   MASISCSIQFAINSRASTSHSTCRV---LNLRNGFLCIPRTVNGTTTRSTTKLGPSNGGR 60
           MASI C+ Q +  + ++++ +  R       R G+L   R         + ++GP+    
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPRAAARLGWLRPSRLSAVVPASESGRVGPT---- 60

Query: 61  AKCWFSF---NAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHP 120
             C+F F   +A+GAGIYGSQ RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALL+Q+IHP
Sbjct: 61  --CFFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHP 120

Query: 121 VDILLLMAASEGDKPKIEELLGAGANYDVLDADGRTALDRANDEIRDFILNF 167
           VDILL++AASEGDKPK+EELL AGA YDV D DGRTALDRA D+ R+FIL F
Sbjct: 121 VDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAADDTREFILGF 166
[Close]
BLAST of Spo18361.1 vs. ExPASy Swiss-Prot
Match: LTD_ORYSJ (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica GN=LTD PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.200e-45
Identity = 101/172 (58.72%), Postives = 124/172 (72.09%), Query Frame = 1 

		  

Query: 1   MASISCSIQFAINSRASTSHSTCRV---LNLRNGFLCIPRTVNGTTTRSTTKLGPSNGGR 60
           MASI C+ Q +  + ++++ +  R       R G+L   R         + ++GP+    
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPRAAARLGWLRPSRLSAVVPASESGRVGPT---- 60

Query: 61  AKCWFSF---NAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHP 120
             C+F F   +A+GAGIYGSQ RDDFDRDDVEQYFNYMGMLAVEGTYDKMEALL+Q+IHP
Sbjct: 61  --CFFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHP 120

Query: 121 VDILLLMAASEGDKPKIEELLGAGANYDVLDADGRTALDRANDEIRDFILNF 167
           VDILL++AASEGDKPK+EELL AGA YDV D DGRTALDRA D+ R+FIL F
Sbjct: 121 VDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAADDTREFILGF 166
[Close]
BLAST of Spo18361.1 vs. TAIR (Arabidopsis)
Match: AT1G50900.1 (Ankyrin repeat family protein)

HSP 1 Score: 194.1 bits (492), Expect = 6.900e-50
Identity = 112/175 (64.00%), Postives = 129/175 (73.71%), Query Frame = 1 

		  

Query: 3   SISCSIQFAINSRASTSHSTCRVLNLRNGFLCIPRTVNGTTTRSTTKLGPSNGGRAKCWF 62
           S SC+   A  S  ST+ S+ R+L+ R  FL    T N        +LGPSNG R  CWF
Sbjct: 7   SFSCAPSLA-TSLFSTTSSSPRLLSSR--FL---GTRNLKLRIRPARLGPSNGSRTTCWF 66

Query: 63  SF-----NAKGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDI 122
            F     +A+ AGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTY KMEALL+ NIHPVDI
Sbjct: 67  KFGKNGVDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDI 126

Query: 123 LLLMAASEGDKPKIEELLGAGANYDVLDADGRTALDRAN-DEIRDFILNFKPQKA 172
           LL++AA+EGD+PKIEELL AGA+Y V DADGRTA+DRAN +EIRD IL +  QKA
Sbjct: 127 LLMLAATEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175
The following BLAST results are available for this feature:
BLAST of Spo18361.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902189171|gb|KNA11301.1|2.6e-91100.hypothetical protein SOVF_1364... [more]
gi|731364843|ref|XP_010694198.1|3.3e-6275.2PREDICTED: protein LHCP TRANSL... [more]
gi|388517805|gb|AFK46964.1|4.7e-5669.1unknown [Lotus japonicus][more]
gi|351723883|ref|NP_001238318.1|4.4e-5467.9uncharacterized protein LOC100... [more]
gi|225461044|ref|XP_002281441.1|8.2e-5367.2PREDICTED: protein LHCP TRANSL... [more]
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BLAST of Spo18361.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QXQ6_SPIOL1.8e-91100.Uncharacterized protein OS=Spi... [more]
A0A0J8BEH1_BETVU2.3e-6275.2Uncharacterized protein OS=Bet... [more]
I3T372_LOTJA3.3e-5669.1Uncharacterized protein OS=Lot... [more]
A0A0B2QED9_GLYSO3.0e-5467.9Protein LHCP TRANSLOCATION DEF... [more]
C6SYF4_SOYBN3.0e-5467.9Uncharacterized protein OS=Gly... [more]
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BLAST of Spo18361.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LTD_ARATH1.2e-4864.0Protein LHCP TRANSLOCATION DEF... [more]
LTD_ORYSI2.2e-4558.7Protein LHCP TRANSLOCATION DEF... [more]
LTD_ORYSJ2.2e-4558.7Protein LHCP TRANSLOCATION DEF... [more]
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BLAST of Spo18361.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G50900.16.9e-5064.0Ankyrin repeat family protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 101..158
score: 1.
IPR020683Ankyrin repeat-containing domainPROFILEPS50297ANK_REP_REGIONcoord: 119..155
score: 10
IPR020683Ankyrin repeat-containing domainunknownSSF48403Ankyrin repeatcoord: 94..164
score: 1.0
NoneNo IPR availablePANTHERPTHR24151FAMILY NOT NAMEDcoord: 50..171
score: 6.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019682 glyceraldehyde-3-phosphate metabolic process
biological_process GO:0007049 cell cycle
biological_process GO:0009637 response to blue light
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0051258 protein polymerization
biological_process GO:0007017 microtubule-based process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0008654 phospholipid biosynthetic process
biological_process GO:0051301 cell division
biological_process GO:0010020 chloroplast fission
biological_process GO:0008152 metabolic process
biological_process GO:0044281 small molecule metabolic process
biological_process GO:0015031 protein transport
cellular_component GO:0009579 thylakoid
cellular_component GO:0016020 membrane
cellular_component GO:0044434 chloroplast part
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005874 microtubule
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0042802 identical protein binding
molecular_function GO:0043621 protein self-association
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo107020.66Barchart | Table
Spo089980.65Barchart | Table
Spo170810.65Barchart | Table