Spo18448 (gene) | SpinachBase

Overview


Name	Spo18448
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Methyl-CpG-binding domain-containing protein 2
Location	chr1 : 32045956 .. 32051743 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGTAAAATATTTCTTCATCCATTTGCATTTCGCCCCTTTTCTCTCTCCTCTTCTCCTTTTCATCATTACCCCACCATCTTCTTCTACAACCTCCCTCCATCCCCCCCTCTCTCTCCCACCCTGTTTCGCGCAGTTTTCCCCCCATCTCCTGCCATCCACATCAACAAATCCCTAAATCGATCAAACATCTTCGACTAAATAAACAGAACACCCATTTCAATTCCCCCAAAAATATTTTATTTAATATATTTTAACCCCTCTTTACTTCTCCATGCTCTACAAACAAAGCAGAAATATTCAAATTATATAAATCAGTAACTTCTCCAGATCTTACAATTCTGCTTTCTGGGTATCTTTGGGTTTATTTAATCTATTTGCTTACATAATTTTTTTTTCAAATTTTTGCAGGAAAATTTCAGCGAAATTTAAATAATGCAACAAGAAGAACCCAGCTCAAACCCAGTAGTTTTATCCTCGGATGATGAAGATGAACAACCCACTCATAACGACTATCAAATAGTCCTATACGACCCAACTGCAAATGGAAACGACCCAAATGCAAATGGAAACGAGCTAGCAATCACCGTAGCTGAACCCGCACACGAACCCAAACACGAAGCCGGTCCGATACACTGGAAACCACCATTGTTCTCAAATTTAGGGGGAGGAGGACCTCAAGCTAATTTAACACAAAGAGTTTTACCAGCAGTGGGTTCATTTACAGTACAATGTGCTGTTTGCTTCAAATGGAGGCTTATACCTTCAAAGGAGAAGTATGAGGAGATCAGGGAACATATTTTGCAGCAACCATTTACATGTGATTTGGCTAAGGAGTGGAGGGGTGAGATTACTTGTGATACACCAACTGATCTTGAGCAAGATAATAGTAGATTGTGGGCCATTGATAAGCCTAATATTTCTCAGCCTCCTCCTGGTTGGGAAAGGGAGCTTAGGATTCGTGGTGAAGGCAGCTCTAAATTTGCTGATGTGTATGTATCTCTCTCCTGTTTTTTTATGGAGTTTTAAAGTTCATTTTTAAAATTATTGGGGGTTTGTGATTAACATATGTATGCTAATTTTAGTTGATGAATAGTGATGTAGACGGGATTTGATCCCGGACTTGGGTATCACCTTCCCGAGACTACTAACCAAGCTAATTAGTATCCGCCATATGTTGTTATGTGCTTTTTTTTTTTGTGTTTAGGTTCTTGGGTTTTCTATATGATGAGGGAATTTGTTTTTGTTCTGATGGGGTTTTTTTAGGGTTTATGATTGAATAAGTGAGTTCATGAACATGTTTGTTGTTCTTGTTCTTTGATTGTTGGTTACAAAAGTTTATTTTTTCTTTGCGTTTGTTTTGTATTAGGTGAATATAATTGTGTCAATAGCAGTTAGTTGGTGTTAAATGATCAATTTCTTATGTTGATTTGCTGTTTGTTTACTTCTATTTTATTATGATCTGATTGCATGTGAGGTGTGGTTATACCTTTTTGGCTATACTGATGACTGGTTACCAAATCTCCAAGACATCTGTGGCTGGTTGCTTTCATTTGTTGTGAAACGTTGCTTGTACTTATGCTTTGATCATTCTCTTGGTTGTTGGTGTCTTGTTGAGCTTGTATCGATTTTGGAGGTTATTATATTTCGTGTTTGTTATCTAGGTTTTCTGTCAATCAGCGGAGGATGTCTGTATCTTACTGCTTAAGAGTCACCCTTAAAACACATGCACAGATTTATAGTTCTGTCATTCAGGAGTTAGAACCGCGTGTTGAAGGCCAGACAATGAGTGCGTAGTATAGCTCTTATTGCTAGTAGATTTATGGAATATGTCGTTGACCACTACCCACGATTCACTTTGGAACATTTTTTATTTTAAAAGGTCTTATGGATTTATTGGCTTCTATACTCAAATTTATCTGGCATGCTTCATTTTCTGATCATTTGATCATGTAGAGGTGACGGCTATGATGAAATCCTACTATTCTGCCGCTACATGATAAGCTCCTATTTCGTATGCTGAGAGCTTCAGGCTTGGTTATTGTCCCCCCTTTCAAGTAGGGGTGTGCCTGAGTGACACAGAAGGGCCTTGTAATGACCGGATTCCTCCCATACAATATCTTGGCATCCCTTCTGTTTGCACCCAATTCTTGATGAGTTCTTAATGATAATTGTCATGTGGTAAAGGAAGTTTTCTGCAGCTATCACCCTAATTTCAGCAAGACACCTGGCTTTTTATGTGAAACACAAACCCATGTCAATGAACAAGAACATCAATAAGAGAGACCAAAGTAGATGATCTGTGGGAAAGGTTCAGAGAGAGAGTTTCGGATTACATCTGTGGCAAATTTCTCTTTTCTCAGCTTCCTTGTCTATAAGTGTTGAATTTTGCCACTTTCCCTAATCTTGCTAACCAGGTACCCATGTTCAAGTCCTTTTTGTTTGAATATAGGTCTGACCTTGCACGATTCTACGTGTATCAGCTTAACTTAGCTTATCTAGTTACTATCACAGTTGATATCTTATATAGAAGTATAACCTTAACACCTTAAGCTGTTGATAGCATGATTCAAGTAACGATTGTTATGGGAACGTGGGAGGGGAGGGTCATTTTAGTAAACATAATTAGCAATTGTTCAATGTATATGCTACACCATACTATGTCTTTCCAGATCACTAACTAGCTTATGCCTGTAACTTCAACTGTTACTTTTTTTCTTTTGAAACCAATCCAGTTTTGCACCCCTTAACCCCAGCTTGTGTTGTTATTTATGTATATCATGACAACAAAATTTGCTTAATATTTTCAGGTACTATATTGCACCATCTGGTAAGAGACTTCGGTCGATGGTGGAGATTCAGAGGTATGTTTTTATTAGCCTCTTCATCTTGAAATTATCTTCTTTGCTAGATCTTTATTTGTAGTGTGTTCTGTACTGATTGCTTGTGTGCAGAAGTTTCATTCTTATGCAATATCCATGACTCCTATGTTTTGTCTGTATGCAGATACCTGATGGAGCATCCCGAATTCATTATGGAAGGAGTGACTATGTCCCAGTTCTCATTTCAAATTCCAAAGCCTCTGCAAGAGGACTATGTCAGAAAGCGCCCTGCTCGTTTACCTATGCCTGATGGCTCTAATTTTGGGATGTCAAGACCCGATCAGACCATCGCTGGTATATTTTATGTTTTATAATTTGGATGCTTGTATTTTATGTTTAATAACTTGGATGCTTATATTCAGACCATAGTACCATATTTTCTAATCAAATGGAACCAGAAAAGCTGCCTTAGCAAGCCTTCTAAAGATAATTTCTGAACACATATGCTTTATGTTTTGAAAGGGGAAATAAGAAAAAACAAAAATTGATACATGGAAGACAAATAACCTGATAGTGATGCTTGATGCCTGTAAATTTTCTAGCAATAGTCAATACTTAACATATTTGTACCATTGATTACATTTATCTGAATATCAAATTGAATATCATGCTTCTGTAATAAATGTTTGTCTCTGATGAAAATTCTATGGATCCGTTACCAACTATGACCATTGAAGATAATGTTGGTATGCTAGGGAACTGCAAATGAGATTACGTTATCCAAATGATATGATTAGGGCAAGCTGGAATTCATTGCTTCTTATCTTAATGGGCTACATTGTGGCATTATTAACTGGAAGCTGTAATCTTTTATTTATCCCCTTTTTTCTTAATCAAGGACTTTATGCTCATAGGTAATAGTCAAGAAATGGTTGATGAGCTCTAACTTGTCGTTTTTTGTTACTCCGTACTAACACAAACACGTGTTGATAACTGTTCCTGATTCCTATTTGACACGTGTGAAAAACTTCATTCTTTGCCAGTTGATATTGTTATGTTTCTATTCTGCATGCAGTCTTGTTGTATATGTTTCAACTGCTTCCTCGTAAATGACTTTCTTGTAATCTCTACTGATATACAGTGTTGCGATAATGCTGATAATAAAATTTTCCGTATTTATGTACTACGGAATATGTGATTAAGAATGAGCAGCTTGAATTATTAATCAATGGAAAAAAATCAACATCAAGATCATGTTAGTTCTGTCATAACGAGTTGAAAAGGCTAAATTATAAAAGAAACCTTGTGCATACCCAAATAGATACTAAAATGTTTGGTTGCGTGATTTTGTACTCCTGCTATTCTGTTTGTCTTTGTGTGTGTACCTGTACTTGGATATGATCTGTATTGACTACTCGAAAACTTAGCAAAACTTGAGATATCCATGCCCACTTATCAAACAAGTCAAGCGTGTGTTTAAGTAACTTGAGCTGCAAGTGATCTTGAATTGTGCTAGGATCCTAGGAGGTTGCTATAGGAATTAGGGCATACTTATTGGCAAGGAGAGAACTGAAAGTATGGTGCACTTTAGTGATTGCCACTATATGTTTCAGTTGATGGAGAAAACTGGTACCATTCTATTATTGTTTGCTGCAAAGGGGTCTTGAACTCTGGATCTTTTGGAGAATGCATAGTAAGAAGTATTTTCCTTTACTGCCTATGTTACCTTTTCTTGCTGTTCTAGTATCGTTAGCTGCAGATAGGAGTCTGGGCAGGCTAGTATAAATGATCTAAATGATGAAAAGTATAGCTTTGTTTGAATGTGTATGCATATTTTTGTGCCTTTTCTAATGGAGTTGGAAAAATTGCTAGGTGGCTTGGCTCATTAAGTTACCTTAGAATATGAAATTCTCGTGTTAGGTTTGTTTCAAAAAATCATGATCATGTTTTGTTGTAAACATTGTCAGATTGTCTTAAACCTCAAAGGGATTTTGGTAGGTTTTGCAGACTTTTGTTTCTTGGATGTTTCTCTTTTAGTTTTGACAAAGGGATTATCTTGCTACGTATACTGTTCTGGTCTATCATTTTATGGTGTTACCCGTGTTTCATAATCGGCATAACGCGCTGCTTTTTTGTACTATACTTGCATACATTGTAAACAATACTTTTCCCGTGTTCTTATTATTTAATGTATCAGTCATTTACAACTCGTGCGCAAGTAATGTATCTTATCCTGTGTTTGCAGCCAGTCCTTTATCATGGGCAGCCCCAGATAAAAGCAGAGCCTTACAGTTATGTCAACCTGAGCCACCAAGCTATTCAGCCAACCTTTTGCCTCCACCAGCAAAAAAAAAGTCTCGGTTATCAACACACAGCAGTATTCCATTGCAGCACAGTCCACATAAATTCAAGATCAAAGGTCCGCGTCTACCTCCAAATGGTTACTATGACTTGTGAGCTAATAGGTAGCTCCACGTTTTGTGTCTCGAATAGCTTAGAAAATGTGTTATATATAGCCTTCCGTATCTGTTATGGCCTACACTAGCTATATGGTCCATGAGAGTGTAATATGAACCCTTTTTTTTTGTGTGAACTTGGTGAAGATTCAGGAAGTTGATAGAGAAAAAGAGGGACGAGGGGCTTTTACAAACTGGCCTTTTGGGGGGTTTCTTTTGTTTGAGGTGTAAGTTACCCTTGGGTTTCAAACAGAGAAACAATGATATACTATATCGTCGTACTATGTTATAATCTATATGTGTTGTTCGATCTAGCTAATGGTTTTGCGACATATCCAACCAGTTATTTGTTGTAGTGCGTTTTTTCTATGAGAATGACAAGTACCTACCGGTAGACAGTAGTAGAGAACAATCTTATTGTATCTCAGGGGAATTAGCTTTCAAATTATGTTTTACGGAGTACTTTGTTTGGTTCTGATATAGAAAATTATAGAGGTAGTGAAGAGGGGAG

mRNA sequence

CTCGTAAAATATTTCTTCATCCATTTGCATTTCGCCCCTTTTCTCTCTCCTCTTCTCCTTTTCATCATTACCCCACCATCTTCTTCTACAACCTCCCTCCATCCCCCCCTCTCTCTCCCACCCTGTTTCGCGCAGTTTTCCCCCCATCTCCTGCCATCCACATCAACAAATCCCTAAATCGATCAAACATCTTCGACTAAATAAACAGAACACCCATTTCAATTCCCCCAAAAATATTTTATTTAATATATTTTAACCCCTCTTTACTTCTCCATGCTCTACAAACAAAGCAGAAATATTCAAATTATATAAATCAGAAAATTTCAGCGAAATTTAAATAATGCAACAAGAAGAACCCAGCTCAAACCCAGTAGTTTTATCCTCGGATGATGAAGATGAACAACCCACTCATAACGACTATCAAATAGTCCTATACGACCCAACTGCAAATGGAAACGACCCAAATGCAAATGGAAACGAGCTAGCAATCACCGTAGCTGAACCCGCACACGAACCCAAACACGAAGCCGGTCCGATACACTGGAAACCACCATTGTTCTCAAATTTAGGGGGAGGAGGACCTCAAGCTAATTTAACACAAAGAGTTTTACCAGCAGTGGGTTCATTTACAGTACAATGTGCTGTTTGCTTCAAATGGAGGCTTATACCTTCAAAGGAGAAGTATGAGGAGATCAGGGAACATATTTTGCAGCAACCATTTACATGTGATTTGGCTAAGGAGTGGAGGGGTGAGATTACTTGTGATACACCAACTGATCTTGAGCAAGATAATAGTAGATTGTGGGCCATTGATAAGCCTAATATTTCTCAGCCTCCTCCTGGTTGGGAAAGGGAGCTTAGGATTCGTGGTGAAGGCAGCTCTAAATTTGCTGATGTGTACTATATTGCACCATCTGGTAAGAGACTTCGGTCGATGGTGGAGATTCAGAGATACCTGATGGAGCATCCCGAATTCATTATGGAAGGAGTGACTATGTCCCAGTTCTCATTTCAAATTCCAAAGCCTCTGCAAGAGGACTATGTCAGAAAGCGCCCTGCTCGTTTACCTATGCCTGATGGCTCTAATTTTGGGATGTCAAGACCCGATCAGACCATCGCTGCCAGTCCTTTATCATGGGCAGCCCCAGATAAAAGCAGAGCCTTACAGTTATGTCAACCTGAGCCACCAAGCTATTCAGCCAACCTTTTGCCTCCACCAGCAAAAAAAAAGTCTCGGTTATCAACACACAGCAGTATTCCATTGCAGCACAGTCCACATAAATTCAAGATCAAAGGTCCGCGTCTACCTCCAAATGGTTACTATGACTTGTGAGCTAATAGGTAGCTCCACGTTTTGTGTCTCGAATAGCTTAGAAAATGTGTTATATATAGCCTTCCGTATCTGTTATGGCCTACACTAGCTATATGGTCCATGAGAGTGTAATATGAACCCTTTTTTTTTGTGTGAACTTGGTGAAGATTCAGGAAGTTGATAGAGAAAAAGAGGGACGAGGGGCTTTTACAAACTGGCCTTTTGGGGGGTTTCTTTTGTTTGAGGTGTAAGTTACCCTTGGGTTTCAAACAGAGAAACAATGATATACTATATCGTCGTACTATGTTATAATCTATATGTGTTGTTCGATCTAGCTAATGGTTTTGCGACATATCCAACCAGTTATTTGTTGTAGTGCGTTTTTTCTATGAGAATGACAAGTACCTACCGGTAGACAGTAGTAGAGAACAATCTTATTGTATCTCAGGGGAATTAGCTTTCAAATTATGTTTTACGGAGTACTTTGTTTGGTTCTGATATAGAAAATTATAGAGGTAGTGAAGAGGGGAG

Coding sequence (CDS)

ATGCAACAAGAAGAACCCAGCTCAAACCCAGTAGTTTTATCCTCGGATGATGAAGATGAACAACCCACTCATAACGACTATCAAATAGTCCTATACGACCCAACTGCAAATGGAAACGACCCAAATGCAAATGGAAACGAGCTAGCAATCACCGTAGCTGAACCCGCACACGAACCCAAACACGAAGCCGGTCCGATACACTGGAAACCACCATTGTTCTCAAATTTAGGGGGAGGAGGACCTCAAGCTAATTTAACACAAAGAGTTTTACCAGCAGTGGGTTCATTTACAGTACAATGTGCTGTTTGCTTCAAATGGAGGCTTATACCTTCAAAGGAGAAGTATGAGGAGATCAGGGAACATATTTTGCAGCAACCATTTACATGTGATTTGGCTAAGGAGTGGAGGGGTGAGATTACTTGTGATACACCAACTGATCTTGAGCAAGATAATAGTAGATTGTGGGCCATTGATAAGCCTAATATTTCTCAGCCTCCTCCTGGTTGGGAAAGGGAGCTTAGGATTCGTGGTGAAGGCAGCTCTAAATTTGCTGATGTGTACTATATTGCACCATCTGGTAAGAGACTTCGGTCGATGGTGGAGATTCAGAGATACCTGATGGAGCATCCCGAATTCATTATGGAAGGAGTGACTATGTCCCAGTTCTCATTTCAAATTCCAAAGCCTCTGCAAGAGGACTATGTCAGAAAGCGCCCTGCTCGTTTACCTATGCCTGATGGCTCTAATTTTGGGATGTCAAGACCCGATCAGACCATCGCTGCCAGTCCTTTATCATGGGCAGCCCCAGATAAAAGCAGAGCCTTACAGTTATGTCAACCTGAGCCACCAAGCTATTCAGCCAACCTTTTGCCTCCACCAGCAAAAAAAAAGTCTCGGTTATCAACACACAGCAGTATTCCATTGCAGCACAGTCCACATAAATTCAAGATCAAAGGTCCGCGTCTACCTCCAAATGGTTACTATGACTTGTGA

Protein sequence

MQQEEPSSNPVVLSSDDEDEQPTHNDYQIVLYDPTANGNDPNANGNELAITVAEPAHEPKHEAGPIHWKPPLFSNLGGGGPQANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIREHILQQPFTCDLAKEWRGEITCDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGSSKFADVYYIAPSGKRLRSMVEIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPARLPMPDGSNFGMSRPDQTIAASPLSWAAPDKSRALQLCQPEPPSYSANLLPPPAKKKSRLSTHSSIPLQHSPHKFKIKGPRLPPNGYYDL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo18448.1	Spo18448.1	mRNA

Homology

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BLAST of Spo18448.1 vs. NCBI nr
Match: gi|902219735|gb|KNA18395.1| (hypothetical protein SOVF_071160 [Spinacia oleracea])

HSP 1 Score: 679.5 bits (1752), Expect = 3.000e-192
Identity = 327/330 (99.09%), Postives = 328/330 (99.39%), Query Frame = 1


		  
Query: 1   MQQEEPSSNPVVLSSDDEDEQPTHNDYQIVLYDPTANGNDPNANGNELAITVAEPAHEPK 60
           MQQEEPSSNPVVLSSDDEDEQPTHNDYQIVLYDPTANGN+PNAN NELAITVAEPAHEPK
Sbjct: 1   MQQEEPSSNPVVLSSDDEDEQPTHNDYQIVLYDPTANGNEPNANANELAITVAEPAHEPK 60

Query: 61  HEAGPIHWKPPLFSNLGGGGPQANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIRE 120
           HEAGPIHWKPPLFSNLGGGG QANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIRE
Sbjct: 61  HEAGPIHWKPPLFSNLGGGGSQANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIRE 120

Query: 121 HILQQPFTCDLAKEWRGEITCDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGS 180
           HILQQPFTCDLAKEWRGEITCDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGS
Sbjct: 121 HILQQPFTCDLAKEWRGEITCDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGS 180

Query: 181 SKFADVYYIAPSGKRLRSMVEIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPA 240
           SKFADVYYIAPSGKRLRSMVEIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPA
Sbjct: 181 SKFADVYYIAPSGKRLRSMVEIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPA 240

Query: 241 RLPMPDGSNFGMSRPDQTIAASPLSWAAPDKSRALQLCQPEPPSYSANLLPPPAKKKSRL 300
           RLPMPDGSNFGMSRPDQTIAASPLSWAAPDKSRALQLCQPEPPSYSANLLPPPAKKKSRL
Sbjct: 241 RLPMPDGSNFGMSRPDQTIAASPLSWAAPDKSRALQLCQPEPPSYSANLLPPPAKKKSRL 300

Query: 301 STHSSIPLQHSPHKFKIKGPRLPPNGYYDL 331
           STHSSIPLQHSPHKFKIKGPRLPPNGYYDL
Sbjct: 301 STHSSIPLQHSPHKFKIKGPRLPPNGYYDL 330

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BLAST of Spo18448.1 vs. NCBI nr
Match: gi|731318180|ref|XP_010669582.1| (PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 421.0 bits (1081), Expect = 1.900e-114
Identity = 227/334 (67.96%), Postives = 253/334 (75.75%), Query Frame = 1


		  
Query: 2   QQEEPSSNPVVLSSDDEDEQPTHNDYQIVLYDPTANGNDPNANGNELAITVAEPAHEPKH 61
           Q E+PS N VVLSSDDE+EQ T ND QIVLYDPT  G+                      
Sbjct: 9   QNEKPSINHVVLSSDDEEEQ-TQNDKQIVLYDPTTIGSV--------------------- 68

Query: 62  EAGPIHWKPPLFSNLGGGGPQANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIREH 121
           EA PI  KPPL  +     P   + QRVLPAVG+FTVQCA CFKWRLIP+KEKYEEIRE+
Sbjct: 69  EADPIQCKPPLTLSRPDSNP---VPQRVLPAVGAFTVQCAKCFKWRLIPTKEKYEEIREN 128

Query: 122 ILQQPFTCDLAKEWRGEITCDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGSS 181
           IL+ PF+CDLAKEWR E++CD   DLEQDNSRLWAIDKPNI+QPPPGWERELRIRGEG S
Sbjct: 129 ILELPFSCDLAKEWRPEVSCDEAGDLEQDNSRLWAIDKPNIAQPPPGWERELRIRGEGCS 188

Query: 182 KFADVYYIAPSGKRLRSMVEIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPAR 241
           KFADVYYIAPSGKRLRSMVE+QRYL+EHPEF M+GVT+SQFSF+IPKPL+E+YVRKR AR
Sbjct: 189 KFADVYYIAPSGKRLRSMVEVQRYLLEHPEFAMQGVTLSQFSFRIPKPLKENYVRKRTAR 248

Query: 242 LPMPDGSNFGMSRPD--QTIAASPLSWAAPDKSRALQLCQPEPPSYSANLLPPPAKKKSR 301
           LPMPD +NFGM  P   QTI ASPLSWAAP     LQL +   P  SA+ + PPAKKK+R
Sbjct: 249 LPMPDETNFGMPGPRHLQTIEASPLSWAAPADPTPLQLSR---PGLSAD-VSPPAKKKAR 308

Query: 302 LS---THSSIPLQHSPHKFKIKGPRLPPNGYYDL 331
            S   THSSIPLQH+PH FKI GP LPPNG YDL
Sbjct: 309 QSTKHTHSSIPLQHTPHTFKINGPSLPPNGVYDL 313

[Close]

BLAST of Spo18448.1 vs. NCBI nr
Match: gi|703139321|ref|XP_010106952.1| (Methyl-CpG-binding domain-containing protein 2 [Morus notabilis])

HSP 1 Score: 312.8 bits (800), Expect = 7.300e-82
Identity = 168/293 (57.34%), Postives = 202/293 (68.94%), Query Frame = 1


		  
Query: 14  SSDDEDEQPTHNDYQIVLYDPTANGNDPNANGNELAITVAEPA----HEPKHEAGPIHWK 73
           SS+DE+ Q      Q+VLYDP ANG           +   EPA      P+ +  PI   
Sbjct: 36  SSEDENNQSGDASKQLVLYDPAANGT---------LVPAPEPATPFQQHPRRQGFPI--- 95

Query: 74  PPLFSNLGGGGPQANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIREHILQQPFTC 133
               SN          + RVLP+VG+FTVQCA CFKWRLIP+KEKYEEIREHIL+QPF C
Sbjct: 96  ----SN--------QQSPRVLPSVGAFTVQCANCFKWRLIPTKEKYEEIREHILEQPFYC 155

Query: 134 DLAKEWRGEITCDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGSSKFADVYYI 193
           + A+EWR +I+CD P D+ QD SRLWAIDKPNI+QPPPGW+R LRIRGEGS+KFADVYY+
Sbjct: 156 ETAREWRPDISCDDPADISQDGSRLWAIDKPNIAQPPPGWQRLLRIRGEGSTKFADVYYV 215

Query: 194 APSGKRLRSMVEIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPARLPMPDGSN 253
           APSGKRLRSMVE+Q+YL+EHPE++  GVTMSQFSFQIPKPLQE+YVRKRPARL      N
Sbjct: 216 APSGKRLRSMVEVQKYLLEHPEYVSNGVTMSQFSFQIPKPLQENYVRKRPARLLASCNGN 275

Query: 254 FGMSRPDQTIAASPLSWAAPDKSRALQLCQPE-PPSYSANLLPPPAKKKSRLS 302
             +  PD      PL+WA PD+S  LQL  P  PP    + +  PAKK+++ S
Sbjct: 276 ERL-EPD---LVRPLAWAGPDESPDLQLGMPRLPPPCVPDPINRPAKKRAKKS 300

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BLAST of Spo18448.1 vs. NCBI nr
Match: gi|225468218|ref|XP_002263085.1| (PREDICTED: methyl-CpG-binding domain-containing protein 2 [Vitis vinifera])

HSP 1 Score: 309.3 bits (791), Expect = 8.100e-81
Identity = 168/339 (49.56%), Postives = 214/339 (63.13%), Query Frame = 1


		  
Query: 1   MQQEEPSSNPVVLSSDDEDEQPTHNDYQIVLYDPTANGNDPNANGNELAITVAEPAHEPK 60
           +   E          DD++    +   Q+V+YDP AN           + T  EP  +P 
Sbjct: 36  LSSSEEEEEDFYAEEDDDNHSYENTSNQLVVYDPVAN-----------SATEVEPVPDP- 95

Query: 61  HEAGPIHWKPPLFSNLGGGGPQANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIRE 120
                I ++ P F+    G    N   RVLP+VG+FTVQCA CFKWRLIP+KEKYEEIRE
Sbjct: 96  -----IQYRLPSFT----GYSTTNAPSRVLPSVGAFTVQCANCFKWRLIPTKEKYEEIRE 155

Query: 121 HILQQPFTCDLAKEWRGEITCDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGS 180
           HIL+QPF C+ A+EWR  ++CD P D+ QD SRLWAIDKPNI+QPP GW+R LRIRGEGS
Sbjct: 156 HILEQPFVCETAREWRPNVSCDDPADISQDGSRLWAIDKPNIAQPPAGWQRLLRIRGEGS 215

Query: 181 SKFADVYYIAPSGKRLRSMVEIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPA 240
           +KFADVYY+APSGKRLRSMVE+Q+YL+EHPE+++ GVT+SQFSFQIPKPLQE+YVRKRPA
Sbjct: 216 TKFADVYYVAPSGKRLRSMVEVQKYLLEHPEYMVHGVTLSQFSFQIPKPLQENYVRKRPA 275

Query: 241 RL---PMPDGSNFGMSRPDQTIAASPLSWAAPDKSRALQLCQP--EPPSYSANLLPP--- 300
           R+      D ++ GMSRP +    +PLSWA P +   LQL  P    P + A +  P   
Sbjct: 276 RVNAGSYDDTTSSGMSRPLEPGEVNPLSWAGPAECIDLQLRTPGLSAPYFEAPVFDPVSR 335

Query: 301 PAKKKSRLSTHSSIP--LQHSPHKFKIKGPRLPPNGYYD 330
           P K+  R          + ++  K K++ P     G YD
Sbjct: 336 PTKQARRTLPRDMYDSNMVYNQQKVKVEEPNQSRAGDYD 353

[Close]

BLAST of Spo18448.1 vs. NCBI nr
Match: gi|590582070|ref|XP_007014522.1| (Methyl-CPG-binding domain protein 02, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 305.1 bits (780), Expect = 1.500e-79
Identity = 171/324 (52.78%), Postives = 208/324 (64.20%), Query Frame = 1


		  
Query: 14  SSDDEDEQPTHND---------YQIVLYDPTANGNDPNANGNELAITVAEPAHEPKHEAG 73
           SS D+D Q T ND          Q+VLYDP ANG            TVA  +  P    G
Sbjct: 43  SSSDDDSQATQNDDDLDNGNASKQLVLYDPAANG------------TVAIDSTPP----G 102

Query: 74  PIHWKPPLFSNLGGGGPQANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIREHILQ 133
           PI  +PP              + RVLP+VG+FTVQCA CFKWRLIP+KEKYEEIREHIL+
Sbjct: 103 PIQCRPPPCPRFS--------SSRVLPSVGAFTVQCANCFKWRLIPTKEKYEEIREHILE 162

Query: 134 QPFTCDLAKEWRGEITCDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGSSKFA 193
            PF C+ A+EWR +I+CD PTD+ QD SRLWAIDKPNI+QPPPGW+R LRIRGEGS+KFA
Sbjct: 163 NPFVCETAREWRPDISCDDPTDISQDGSRLWAIDKPNIAQPPPGWQRLLRIRGEGSTKFA 222

Query: 194 DVYYIAPSGKRLRSMVEIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPARLPM 253
           D+YY APSGKRLRSMVE+Q+YL+EHPE+  EGVT+S+FSFQIPKPLQEDYVRKRPA  P 
Sbjct: 223 DIYYQAPSGKRLRSMVEVQKYLIEHPEYATEGVTLSRFSFQIPKPLQEDYVRKRPA--PA 282

Query: 254 PDGSNFGMSRPDQTIAASPLSWAAPDKSRALQLCQPEPPSYSANLLPPPAKKKSRLSTHS 313
               +   +RP +    +PL+WA PD +  LQL +P         LPPP+ +        
Sbjct: 283 RLTGSHDNARPLEPGEVNPLAWADPDDT-DLQLGRP--------ALPPPSVE-------- 322

Query: 314 SIPLQHSPHKFKIKGPRLPPNGYY 329
             P+  SP++   +  R P    Y
Sbjct: 343 -APVSDSPNRPAKQARRTPSEQMY 322

[Close]

BLAST of Spo18448.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFY9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_071160 PE=4 SV=1)

HSP 1 Score: 679.5 bits (1752), Expect = 2.100e-192
Identity = 327/330 (99.09%), Postives = 328/330 (99.39%), Query Frame = 1


		  
Query: 1   MQQEEPSSNPVVLSSDDEDEQPTHNDYQIVLYDPTANGNDPNANGNELAITVAEPAHEPK 60
           MQQEEPSSNPVVLSSDDEDEQPTHNDYQIVLYDPTANGN+PNAN NELAITVAEPAHEPK
Sbjct: 1   MQQEEPSSNPVVLSSDDEDEQPTHNDYQIVLYDPTANGNEPNANANELAITVAEPAHEPK 60

Query: 61  HEAGPIHWKPPLFSNLGGGGPQANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIRE 120
           HEAGPIHWKPPLFSNLGGGG QANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIRE
Sbjct: 61  HEAGPIHWKPPLFSNLGGGGSQANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIRE 120

Query: 121 HILQQPFTCDLAKEWRGEITCDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGS 180
           HILQQPFTCDLAKEWRGEITCDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGS
Sbjct: 121 HILQQPFTCDLAKEWRGEITCDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGS 180

Query: 181 SKFADVYYIAPSGKRLRSMVEIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPA 240
           SKFADVYYIAPSGKRLRSMVEIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPA
Sbjct: 181 SKFADVYYIAPSGKRLRSMVEIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPA 240

Query: 241 RLPMPDGSNFGMSRPDQTIAASPLSWAAPDKSRALQLCQPEPPSYSANLLPPPAKKKSRL 300
           RLPMPDGSNFGMSRPDQTIAASPLSWAAPDKSRALQLCQPEPPSYSANLLPPPAKKKSRL
Sbjct: 241 RLPMPDGSNFGMSRPDQTIAASPLSWAAPDKSRALQLCQPEPPSYSANLLPPPAKKKSRL 300

Query: 301 STHSSIPLQHSPHKFKIKGPRLPPNGYYDL 331
           STHSSIPLQHSPHKFKIKGPRLPPNGYYDL
Sbjct: 301 STHSSIPLQHSPHKFKIKGPRLPPNGYYDL 330

[Close]

BLAST of Spo18448.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FP83_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g035750 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 1.300e-114
Identity = 227/334 (67.96%), Postives = 253/334 (75.75%), Query Frame = 1


		  
Query: 2   QQEEPSSNPVVLSSDDEDEQPTHNDYQIVLYDPTANGNDPNANGNELAITVAEPAHEPKH 61
           Q E+PS N VVLSSDDE+EQ T ND QIVLYDPT  G+                      
Sbjct: 9   QNEKPSINHVVLSSDDEEEQ-TQNDKQIVLYDPTTIGSV--------------------- 68

Query: 62  EAGPIHWKPPLFSNLGGGGPQANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIREH 121
           EA PI  KPPL  +     P   + QRVLPAVG+FTVQCA CFKWRLIP+KEKYEEIRE+
Sbjct: 69  EADPIQCKPPLTLSRPDSNP---VPQRVLPAVGAFTVQCAKCFKWRLIPTKEKYEEIREN 128

Query: 122 ILQQPFTCDLAKEWRGEITCDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGSS 181
           IL+ PF+CDLAKEWR E++CD   DLEQDNSRLWAIDKPNI+QPPPGWERELRIRGEG S
Sbjct: 129 ILELPFSCDLAKEWRPEVSCDEAGDLEQDNSRLWAIDKPNIAQPPPGWERELRIRGEGCS 188

Query: 182 KFADVYYIAPSGKRLRSMVEIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPAR 241
           KFADVYYIAPSGKRLRSMVE+QRYL+EHPEF M+GVT+SQFSF+IPKPL+E+YVRKR AR
Sbjct: 189 KFADVYYIAPSGKRLRSMVEVQRYLLEHPEFAMQGVTLSQFSFRIPKPLKENYVRKRTAR 248

Query: 242 LPMPDGSNFGMSRPD--QTIAASPLSWAAPDKSRALQLCQPEPPSYSANLLPPPAKKKSR 301
           LPMPD +NFGM  P   QTI ASPLSWAAP     LQL +   P  SA+ + PPAKKK+R
Sbjct: 249 LPMPDETNFGMPGPRHLQTIEASPLSWAAPADPTPLQLSR---PGLSAD-VSPPAKKKAR 308

Query: 302 LS---THSSIPLQHSPHKFKIKGPRLPPNGYYDL 331
            S   THSSIPLQH+PH FKI GP LPPNG YDL
Sbjct: 309 QSTKHTHSSIPLQHTPHTFKINGPSLPPNGVYDL 313

[Close]

BLAST of Spo18448.1 vs. UniProtKB/TrEMBL
Match: W9RVH4_9ROSA (Methyl-CpG-binding domain-containing protein 2 OS=Morus notabilis GN=L484_008228 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 5.100e-82
Identity = 168/293 (57.34%), Postives = 202/293 (68.94%), Query Frame = 1


		  
Query: 14  SSDDEDEQPTHNDYQIVLYDPTANGNDPNANGNELAITVAEPA----HEPKHEAGPIHWK 73
           SS+DE+ Q      Q+VLYDP ANG           +   EPA      P+ +  PI   
Sbjct: 36  SSEDENNQSGDASKQLVLYDPAANGT---------LVPAPEPATPFQQHPRRQGFPI--- 95

Query: 74  PPLFSNLGGGGPQANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIREHILQQPFTC 133
               SN          + RVLP+VG+FTVQCA CFKWRLIP+KEKYEEIREHIL+QPF C
Sbjct: 96  ----SN--------QQSPRVLPSVGAFTVQCANCFKWRLIPTKEKYEEIREHILEQPFYC 155

Query: 134 DLAKEWRGEITCDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGSSKFADVYYI 193
           + A+EWR +I+CD P D+ QD SRLWAIDKPNI+QPPPGW+R LRIRGEGS+KFADVYY+
Sbjct: 156 ETAREWRPDISCDDPADISQDGSRLWAIDKPNIAQPPPGWQRLLRIRGEGSTKFADVYYV 215

Query: 194 APSGKRLRSMVEIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPARLPMPDGSN 253
           APSGKRLRSMVE+Q+YL+EHPE++  GVTMSQFSFQIPKPLQE+YVRKRPARL      N
Sbjct: 216 APSGKRLRSMVEVQKYLLEHPEYVSNGVTMSQFSFQIPKPLQENYVRKRPARLLASCNGN 275

Query: 254 FGMSRPDQTIAASPLSWAAPDKSRALQLCQPE-PPSYSANLLPPPAKKKSRLS 302
             +  PD      PL+WA PD+S  LQL  P  PP    + +  PAKK+++ S
Sbjct: 276 ERL-EPD---LVRPLAWAGPDESPDLQLGMPRLPPPCVPDPINRPAKKRAKKS 300

[Close]

BLAST of Spo18448.1 vs. UniProtKB/TrEMBL
Match: D7T0S0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g01010 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 5.600e-81
Identity = 168/339 (49.56%), Postives = 214/339 (63.13%), Query Frame = 1


		  
Query: 1   MQQEEPSSNPVVLSSDDEDEQPTHNDYQIVLYDPTANGNDPNANGNELAITVAEPAHEPK 60
           +   E          DD++    +   Q+V+YDP AN           + T  EP  +P 
Sbjct: 36  LSSSEEEEEDFYAEEDDDNHSYENTSNQLVVYDPVAN-----------SATEVEPVPDP- 95

Query: 61  HEAGPIHWKPPLFSNLGGGGPQANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIRE 120
                I ++ P F+    G    N   RVLP+VG+FTVQCA CFKWRLIP+KEKYEEIRE
Sbjct: 96  -----IQYRLPSFT----GYSTTNAPSRVLPSVGAFTVQCANCFKWRLIPTKEKYEEIRE 155

Query: 121 HILQQPFTCDLAKEWRGEITCDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGS 180
           HIL+QPF C+ A+EWR  ++CD P D+ QD SRLWAIDKPNI+QPP GW+R LRIRGEGS
Sbjct: 156 HILEQPFVCETAREWRPNVSCDDPADISQDGSRLWAIDKPNIAQPPAGWQRLLRIRGEGS 215

Query: 181 SKFADVYYIAPSGKRLRSMVEIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPA 240
           +KFADVYY+APSGKRLRSMVE+Q+YL+EHPE+++ GVT+SQFSFQIPKPLQE+YVRKRPA
Sbjct: 216 TKFADVYYVAPSGKRLRSMVEVQKYLLEHPEYMVHGVTLSQFSFQIPKPLQENYVRKRPA 275

Query: 241 RL---PMPDGSNFGMSRPDQTIAASPLSWAAPDKSRALQLCQP--EPPSYSANLLPP--- 300
           R+      D ++ GMSRP +    +PLSWA P +   LQL  P    P + A +  P   
Sbjct: 276 RVNAGSYDDTTSSGMSRPLEPGEVNPLSWAGPAECIDLQLRTPGLSAPYFEAPVFDPVSR 335

Query: 301 PAKKKSRLSTHSSIP--LQHSPHKFKIKGPRLPPNGYYD 330
           P K+  R          + ++  K K++ P     G YD
Sbjct: 336 PTKQARRTLPRDMYDSNMVYNQQKVKVEEPNQSRAGDYD 353

[Close]

BLAST of Spo18448.1 vs. UniProtKB/TrEMBL
Match: A0A061GRK9_THECC (Methyl-CPG-binding domain protein 02, putative isoform 1 OS=Theobroma cacao GN=TCM_039691 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.100e-79
Identity = 171/324 (52.78%), Postives = 208/324 (64.20%), Query Frame = 1


		  
Query: 14  SSDDEDEQPTHND---------YQIVLYDPTANGNDPNANGNELAITVAEPAHEPKHEAG 73
           SS D+D Q T ND          Q+VLYDP ANG            TVA  +  P    G
Sbjct: 43  SSSDDDSQATQNDDDLDNGNASKQLVLYDPAANG------------TVAIDSTPP----G 102

Query: 74  PIHWKPPLFSNLGGGGPQANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIREHILQ 133
           PI  +PP              + RVLP+VG+FTVQCA CFKWRLIP+KEKYEEIREHIL+
Sbjct: 103 PIQCRPPPCPRFS--------SSRVLPSVGAFTVQCANCFKWRLIPTKEKYEEIREHILE 162

Query: 134 QPFTCDLAKEWRGEITCDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGSSKFA 193
            PF C+ A+EWR +I+CD PTD+ QD SRLWAIDKPNI+QPPPGW+R LRIRGEGS+KFA
Sbjct: 163 NPFVCETAREWRPDISCDDPTDISQDGSRLWAIDKPNIAQPPPGWQRLLRIRGEGSTKFA 222

Query: 194 DVYYIAPSGKRLRSMVEIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPARLPM 253
           D+YY APSGKRLRSMVE+Q+YL+EHPE+  EGVT+S+FSFQIPKPLQEDYVRKRPA  P 
Sbjct: 223 DIYYQAPSGKRLRSMVEVQKYLIEHPEYATEGVTLSRFSFQIPKPLQEDYVRKRPA--PA 282

Query: 254 PDGSNFGMSRPDQTIAASPLSWAAPDKSRALQLCQPEPPSYSANLLPPPAKKKSRLSTHS 313
               +   +RP +    +PL+WA PD +  LQL +P         LPPP+ +        
Sbjct: 283 RLTGSHDNARPLEPGEVNPLAWADPDDT-DLQLGRP--------ALPPPSVE-------- 322

Query: 314 SIPLQHSPHKFKIKGPRLPPNGYY 329
             P+  SP++   +  R P    Y
Sbjct: 343 -APVSDSPNRPAKQARRTPSEQMY 322

[Close]

BLAST of Spo18448.1 vs. ExPASy Swiss-Prot
Match: MBD2_ARATH (Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 PE=1 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.700e-68
Identity = 126/219 (57.53%), Postives = 165/219 (75.34%), Query Frame = 1


		  
Query: 81  PQANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIREHILQQPFTCDLAKEWRGEIT 140
           P ++ TQ   P++G+FTVQCA CFKWRL+PS +KYEEIRE +L+ PF CD A+EW+ +I+
Sbjct: 46  PLSSRTQ--CPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDIS 105

Query: 141 CDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGSSKFADVYYIAPSGKRLRSMV 200
           CD P D+ QD +RLWAIDKPNIS+PP GW+R LRIRGEG ++FADVYY+APSGK+LRS V
Sbjct: 106 CDVPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTV 165

Query: 201 EIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPAR-LPMPDGSNFGMSRPDQTI 260
           E+Q+YL ++ E+I EGV +SQFSFQIPKPLQ+DYVRKRPAR L   D +N  +++     
Sbjct: 166 EVQKYLNDNSEYIGEGVKLSQFSFQIPKPLQDDYVRKRPARLLDSIDNTNTPVAK----- 225

Query: 261 AASPLSWAAPDKSRALQLCQPEPPSYSANLLPPPAKKKS 299
            A+PL+W +PD   +LQL  P     + +   P  KKK+
Sbjct: 226 EANPLAWISPDDHISLQLGTPTESGLNNSHYQPSKKKKT 257

[Close]

BLAST of Spo18448.1 vs. ExPASy Swiss-Prot
Match: MBD12_ARATH (Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana GN=MBD12 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.200e-33
Identity = 72/141 (51.06%), Postives = 90/141 (63.83%), Query Frame = 1


		  
Query: 98  VQCAVCFKWRLIPSKEKYEEIREHILQQPFTCDLAKEWRGEITCDTPTDLEQDNSRLWAI 157
           VQC  C KWRLIPS + Y  I+E  LQ PF C     W   ++C+ P D    ++  W  
Sbjct: 2   VQCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQDGTTCDT--W-- 61

Query: 158 DKPNISQPPPGWERELRIRGEGSSKFADVYYIAPSGKRLRSMVEIQRYLMEHPEFIMEGV 217
             P+I   P GW R + IR E S+KFADVYY  PSG+RLRS  E+Q +L  HPE++ EGV
Sbjct: 62  --PSIPPIPTGWSRSVHIRSE-STKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGV 121

Query: 218 TMSQFSFQIPKPLQEDYVRKR 239
             SQFSFQIPKPL ++YV+KR
Sbjct: 122 NRSQFSFQIPKPLDDNYVKKR 135

[Close]

BLAST of Spo18448.1 vs. ExPASy Swiss-Prot
Match: MBD4_ARATH (Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=MBD4 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.400e-24
Identity = 52/140 (37.14%), Postives = 86/140 (61.43%), Query Frame = 1


		  
Query: 93  VGSFTVQCAVCFKWRLIPSKEKYEEIREHILQQPFTCDLAKEWRGEITCDTPTDLEQDNS 152
           + ++  QC  C KWR+I S+E+YE+IR  +L+ PF C    + +  ++C+ P D++ D+S
Sbjct: 25  IDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNC----QKKQGMSCEEPADIDYDSS 84

Query: 153 RLWAIDKPNISQPPPGWERELRIRGEGSSKFADVYYIAPSGKRLRSMVEIQRYLMEHPEF 212
           R W IDKP + + P G++R L +R + S    D YY  P+GK+LRS  EI  ++  +PEF
Sbjct: 85  RTWVIDKPGLPKTPKGFKRSLVLRKDYSK--MDTYYFTPTGKKLRSRNEIAAFVEANPEF 144

Query: 213 IMEGVTMSQFSFQIPKPLQE 233
                 +  F+F +PK +++
Sbjct: 145 --RNAPLGDFNFTVPKVMED 156

[Close]

BLAST of Spo18448.1 vs. ExPASy Swiss-Prot
Match: MBD1_ARATH (Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=MBD1 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.200e-21
Identity = 49/141 (34.75%), Postives = 84/141 (59.57%), Query Frame = 1


		  
Query: 92  AVGSFTVQCAVCFKWRLIPSKEKYEEIREHILQQPFTCDLAKEWRGEITCDTPTDLEQDN 151
           ++  F VQC  C KWR I ++++YE+IR  + + PF C    + +  ++C+   DL  D+
Sbjct: 51  SIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFC----KTKEGVSCEDVGDLNYDS 110

Query: 152 SRLWAIDKPNISQPPPGWERELRIRGEGSSKFADVYYIAPSGKRLRSMVEIQRYLMEHPE 211
           SR W IDKP + + P G++R L +R + S    D YYI P+GK+L+S  EI  ++  + +
Sbjct: 111 SRTWVIDKPGLPRTPRGFKRSLILRKDYSK--MDAYYITPTGKKLKSRNEIAAFIDANQD 170

Query: 212 FIMEGVTMSQFSFQIPKPLQE 233
           +  +   +  F+F +PK ++E
Sbjct: 171 Y--KYALLGDFNFTVPKVMEE 183

[Close]

BLAST of Spo18448.1 vs. ExPASy Swiss-Prot
Match: MBD3_ARATH (Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=MBD3 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.000e-11
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 1


		  
Query: 93  VGSFTVQCAVCFKWRLIPSKEKYEEIREHILQQPFTCDLAKEWRGEITCDTPTDLEQDNS 152
           + S+  QC  C K R I S+E YEEIR   L++ F C           C+ P D+  +  
Sbjct: 9   IDSYAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECK---------RCEEPGDMVMNFD 68

Query: 153 RL---WAIDKPNISQPPPGWERELRIRGEGSSKFADVYY--IAPSGKRLRSMVEIQRYLM 212
            L   W  D+ +I + P G +R L +R   +    DVYY  +AP  KR +S+ E+  ++ 
Sbjct: 69  SLTMRWFQDEHSIPKTPQGLKRVLVVR--TNCVKVDVYYESLAPRRKRFKSIKEVATFIE 128

Query: 213 EHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRP 240
           +  EF  + +T+ + SF  PK L+   ++K+P
Sbjct: 129 DKEEF--KDMTLEEVSFAAPKRLK---LKKKP 144

[Close]

BLAST of Spo18448.1 vs. TAIR (Arabidopsis)
Match: AT5G35330.1 (methyl-CPG-binding domain protein 02)

HSP 1 Score: 260.4 bits (664), Expect = 1.500e-69
Identity = 126/219 (57.53%), Postives = 165/219 (75.34%), Query Frame = 1


		  
Query: 81  PQANLTQRVLPAVGSFTVQCAVCFKWRLIPSKEKYEEIREHILQQPFTCDLAKEWRGEIT 140
           P ++ TQ   P++G+FTVQCA CFKWRL+PS +KYEEIRE +L+ PF CD A+EW+ +I+
Sbjct: 46  PLSSRTQ--CPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDIS 105

Query: 141 CDTPTDLEQDNSRLWAIDKPNISQPPPGWERELRIRGEGSSKFADVYYIAPSGKRLRSMV 200
           CD P D+ QD +RLWAIDKPNIS+PP GW+R LRIRGEG ++FADVYY+APSGK+LRS V
Sbjct: 106 CDVPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTV 165

Query: 201 EIQRYLMEHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRPAR-LPMPDGSNFGMSRPDQTI 260
           E+Q+YL ++ E+I EGV +SQFSFQIPKPLQ+DYVRKRPAR L   D +N  +++     
Sbjct: 166 EVQKYLNDNSEYIGEGVKLSQFSFQIPKPLQDDYVRKRPARLLDSIDNTNTPVAK----- 225

Query: 261 AASPLSWAAPDKSRALQLCQPEPPSYSANLLPPPAKKKS 299
            A+PL+W +PD   +LQL  P     + +   P  KKK+
Sbjct: 226 EANPLAWISPDDHISLQLGTPTESGLNNSHYQPSKKKKT 257

[Close]

BLAST of Spo18448.1 vs. TAIR (Arabidopsis)
Match: AT5G35338.2 (methyl-CPG-binding domain 12)

HSP 1 Score: 144.4 bits (363), Expect = 1.200e-34
Identity = 72/141 (51.06%), Postives = 90/141 (63.83%), Query Frame = 1


		  
Query: 98  VQCAVCFKWRLIPSKEKYEEIREHILQQPFTCDLAKEWRGEITCDTPTDLEQDNSRLWAI 157
           VQC  C KWRLIPS + Y  I+E  LQ PF C     W   ++C+ P D    ++  W  
Sbjct: 2   VQCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQDGTTCDT--W-- 61

Query: 158 DKPNISQPPPGWERELRIRGEGSSKFADVYYIAPSGKRLRSMVEIQRYLMEHPEFIMEGV 217
             P+I   P GW R + IR E S+KFADVYY  PSG+RLRS  E+Q +L  HPE++ EGV
Sbjct: 62  --PSIPPIPTGWSRSVHIRSE-STKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGV 121

Query: 218 TMSQFSFQIPKPLQEDYVRKR 239
             SQFSFQIPKPL ++YV+KR
Sbjct: 122 NRSQFSFQIPKPLDDNYVKKR 135

[Close]

BLAST of Spo18448.1 vs. TAIR (Arabidopsis)
Match: AT3G63030.1 (methyl-CPG-binding domain 4)

HSP 1 Score: 114.4 bits (285), Expect = 1.300e-25
Identity = 52/140 (37.14%), Postives = 86/140 (61.43%), Query Frame = 1


		  
Query: 93  VGSFTVQCAVCFKWRLIPSKEKYEEIREHILQQPFTCDLAKEWRGEITCDTPTDLEQDNS 152
           + ++  QC  C KWR+I S+E+YE+IR  +L+ PF C    + +  ++C+ P D++ D+S
Sbjct: 25  IDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNC----QKKQGMSCEEPADIDYDSS 84

Query: 153 RLWAIDKPNISQPPPGWERELRIRGEGSSKFADVYYIAPSGKRLRSMVEIQRYLMEHPEF 212
           R W IDKP + + P G++R L +R + S    D YY  P+GK+LRS  EI  ++  +PEF
Sbjct: 85  RTWVIDKPGLPKTPKGFKRSLVLRKDYSK--MDTYYFTPTGKKLRSRNEIAAFVEANPEF 144

Query: 213 IMEGVTMSQFSFQIPKPLQE 233
                 +  F+F +PK +++
Sbjct: 145 --RNAPLGDFNFTVPKVMED 156

[Close]

BLAST of Spo18448.1 vs. TAIR (Arabidopsis)
Match: AT4G22745.1 (methyl-CPG-binding domain 1)

HSP 1 Score: 103.6 bits (257), Expect = 2.400e-22
Identity = 49/141 (34.75%), Postives = 84/141 (59.57%), Query Frame = 1


		  
Query: 92  AVGSFTVQCAVCFKWRLIPSKEKYEEIREHILQQPFTCDLAKEWRGEITCDTPTDLEQDN 151
           ++  F VQC  C KWR I ++++YE+IR  + + PF C    + +  ++C+   DL  D+
Sbjct: 51  SIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFC----KTKEGVSCEDVGDLNYDS 110

Query: 152 SRLWAIDKPNISQPPPGWERELRIRGEGSSKFADVYYIAPSGKRLRSMVEIQRYLMEHPE 211
           SR W IDKP + + P G++R L +R + S    D YYI P+GK+L+S  EI  ++  + +
Sbjct: 111 SRTWVIDKPGLPRTPRGFKRSLILRKDYSK--MDAYYITPTGKKLKSRNEIAAFIDANQD 170

Query: 212 FIMEGVTMSQFSFQIPKPLQE 233
           +  +   +  F+F +PK ++E
Sbjct: 171 Y--KYALLGDFNFTVPKVMEE 183

[Close]

BLAST of Spo18448.1 vs. TAIR (Arabidopsis)
Match: AT4G00416.1 (methyl-CPG-binding domain 3)

HSP 1 Score: 70.9 bits (172), Expect = 1.700e-12
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 1


		  
Query: 93  VGSFTVQCAVCFKWRLIPSKEKYEEIREHILQQPFTCDLAKEWRGEITCDTPTDLEQDNS 152
           + S+  QC  C K R I S+E YEEIR   L++ F C           C+ P D+  +  
Sbjct: 9   IDSYAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECK---------RCEEPGDMVMNFD 68

Query: 153 RL---WAIDKPNISQPPPGWERELRIRGEGSSKFADVYY--IAPSGKRLRSMVEIQRYLM 212
            L   W  D+ +I + P G +R L +R   +    DVYY  +AP  KR +S+ E+  ++ 
Sbjct: 69  SLTMRWFQDEHSIPKTPQGLKRVLVVR--TNCVKVDVYYESLAPRRKRFKSIKEVATFIE 128

Query: 213 EHPEFIMEGVTMSQFSFQIPKPLQEDYVRKRP 240
           +  EF  + +T+ + SF  PK L+   ++K+P
Sbjct: 129 DKEEF--KDMTLEEVSFAAPKRLK---LKKKP 144

The following BLAST results are available for this feature:

BLAST of Spo18448.1 vs. NCBI nr
BLAST of Spo18448.1 vs. UniProtKB/TrEMBL
BLAST of Spo18448.1 vs. ExPASy Swiss-Prot
BLAST of Spo18448.1 vs. TAIR (Arabidopsis)

BLAST of Spo18448.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902219735\|gb\|KNA18395.1\|	3.0e-192	99.0	hypothetical protein SOVF_0711...	[more]
gi\|731318180\|ref\|XP_010669582.1\|	1.9e-114	67.9	PREDICTED: methyl-CpG-binding ...	[more]
gi\|703139321\|ref\|XP_010106952.1\|	7.3e-82	57.3	Methyl-CpG-binding domain-cont...	[more]
gi\|225468218\|ref\|XP_002263085.1\|	8.1e-81	49.5	PREDICTED: methyl-CpG-binding ...	[more]
gi\|590582070\|ref\|XP_007014522.1\|	1.5e-79	52.7	Methyl-CPG-binding domain prot...	[more]

BLAST of Spo18448.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RFY9_SPIOL	2.1e-192	99.0	Uncharacterized protein OS=Spi...	[more]
A0A0J8FP83_BETVU	1.3e-114	67.9	Uncharacterized protein OS=Bet...	[more]
W9RVH4_9ROSA	5.1e-82	57.3	Methyl-CpG-binding domain-cont...	[more]
D7T0S0_VITVI	5.6e-81	49.5	Putative uncharacterized prote...	[more]
A0A061GRK9_THECC	1.1e-79	52.7	Methyl-CPG-binding domain prot...	[more]

BLAST of Spo18448.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
MBD2_ARATH	2.7e-68	57.5	Methyl-CpG-binding domain-cont...	[more]
MBD12_ARATH	2.2e-33	51.0	Putative methyl-CpG-binding do...	[more]
MBD4_ARATH	2.4e-24	37.1	Methyl-CpG-binding domain-cont...	[more]
MBD1_ARATH	4.2e-21	34.7	Methyl-CpG-binding domain-cont...	[more]
MBD3_ARATH	3.0e-11	32.2	Methyl-CpG-binding domain-cont...	[more]

BLAST of Spo18448.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT5G35330.1	1.5e-69	57.5	methyl-CPG-binding domain prot...	[more]
AT5G35338.2	1.2e-34	51.0	methyl-CPG-binding domain 12	[more]
AT3G63030.1	1.3e-25	37.1	methyl-CPG-binding domain 4	[more]
AT4G22745.1	2.4e-22	34.7	methyl-CPG-binding domain 1	[more]
AT4G00416.1	1.7e-12	32.2	methyl-CPG-binding domain 3	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	GENE3D	3.30.890.10		coord: 128..241 score: 5.1
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 166..225 score: 8.2
IPR001739	Methyl-CpG DNA binding	SMART	SM00391	TAM_2	coord: 159..236 score: 3.
IPR001739	Methyl-CpG DNA binding	PROFILE	PS50982	MBD	coord: 155..229 score: 1
IPR011124	Zinc finger, CW-type	PFAM	PF07496	zf-CW	coord: 96..146 score: 4.7
IPR011124	Zinc finger, CW-type	PROFILE	PS51050	ZF_CW	coord: 90..149 score: 11
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 134..242 score: 4.9
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 11..249 score: 2.4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo20676	0.66	Barchart \| Table