Spo18468 (gene) | SpinachBase

Overview


Name	Spo18468
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr1 : 32940838 .. 32941800 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAATTTTTATTTTATTAAAAATTTAAAAAAATGGAAAAATTCCAAAGTCCTAGGCCTATATCAATGGTTCTACCATCTTACCTCTTTCCCCTTTTCCCTCCCTGTCCTCTCACACCCCCTTACAAATTTTTCTCTCTCTAACTCTTTCTCTCTCCTCCCCCCTTAATTGAAAAAACAAGCTTCTTCCTTAAGTTAAGTTTACCCTTAACCCTTAACCCTTAACCCTTAACCCACCCACCATGAATCACCAGAAACCAACACTATATGCGGGTAATCACCACATGAAACGCAGTCCATCTGAGCTTGCCCTGCACGCACTCGTCAATAATAATCCAACGGTTGTGGATCATCCTCATCATTCCCTCTTTTATGATCATGATCATACCGCCGGTTTTGTTGATCCAACGGCTGCCGTTGTTTCCGATCATCATCATCTTGATACTTTTGGATTTAAGAATAATAATAATCAGGTTTATTTCTCTCTCATCTCATCTCTTTTTTATTTTCTCTCTCCAAAAATCTTTCTCTTTCTCTCTCTCTCTCTCACTTTAGCTTTTGTTTTTGTTAATGTTCTCTAACGTTTTTTTGTTAGGCGTTTACGAGATATTTATAGTAGGTTTAGTAAGGTGTATGGGATATATGGTAGGTTGGCGGTGTACTCAATCATTTGCTACTCTAGTCCCGAGTGCTGTACTTTCTGCTTACTTCTTACACGTGCGTCTCACGTGTTCTTTTTTGTTTTTATTTTTTATATTTTTTATTTTTTTTGTCTTCTTTTTGCCTTTTACCGTTTTACGTTGTTGTTTTTTTTTTTTTTTTTTCTTCTTTTTTTTCTCTCTCTTGCTGTGGAATATAATAAATTACAGTACGATGTAATTTTAGCGGTCAAATTTTTACAACCTCGTAAATAGCATCTGTTTTTTTTTTTTTTTTGAAGGTATGTAGCATCTGTTTAATTTAA

mRNA sequence

TATAATTTTTATTTTATTAAAAATTTAAAAAAATGGAAAAATTCCAAAGTCCTAGGCCTATATCAATGGTTCTACCATCTTACCTCTTTCCCCTTTTCCCTCCCTGTCCTCTCACACCCCCTTACAAATTTTTCTCTCTCTAACTCTTTCTCTCTCCTCCCCCCTTAATTGAAAAAACAAGCTTCTTCCTTAAGTTAAGTTTACCCTTAACCCTTAACCCTTAACCCTTAACCCACCCACCATGAATCACCAGAAACCAACACTATATGCGGGTAATCACCACATGAAACGCAGTCCATCTGAGCTTGCCCTGCACGCACTCGTCAATAATAATCCAACGGTTGTGGATCATCCTCATCATTCCCTCTTTTATGATCATGATCATACCGCCGGTTTTGTTGATCCAACGGCTGCCGTTGTTTCCGATCATCATCATCTTGATACTTTTGGATTTAAGAATAATAATAATCAGGTATGTAGCATCTGTTTAATTTAA

Coding sequence (CDS)

ATGAATCACCAGAAACCAACACTATATGCGGGTAATCACCACATGAAACGCAGTCCATCTGAGCTTGCCCTGCACGCACTCGTCAATAATAATCCAACGGTTGTGGATCATCCTCATCATTCCCTCTTTTATGATCATGATCATACCGCCGGTTTTGTTGATCCAACGGCTGCCGTTGTTTCCGATCATCATCATCTTGATACTTTTGGATTTAAGAATAATAATAATCAGGTATGTAGCATCTGTTTAATTTAA

Protein sequence

MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVVSDHHHLDTFGFKNNNNQVCSICLI

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo18468.1	Spo18468.1	mRNA

Homology

[Close]

BLAST of Spo18468.1 vs. NCBI nr
Match: gi|902233324|gb|KNA22998.1| (hypothetical protein SOVF_028880 isoform A [Spinacia oleracea])

HSP 1 Score: 169.1 bits (427), Expect = 3.300e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


		  
Query: 1  MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV 60
          MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV
Sbjct: 1  MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV 60

Query: 61 SDHHHLDTFGFKNNNNQ 78
          SDHHHLDTFGFKNNNNQ
Sbjct: 61 SDHHHLDTFGFKNNNNQ 77

[Close]

BLAST of Spo18468.1 vs. NCBI nr
Match: gi|902233325|gb|KNA22999.1| (hypothetical protein SOVF_028880 isoform B [Spinacia oleracea])

HSP 1 Score: 169.1 bits (427), Expect = 3.300e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


		  
Query: 1  MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV 60
          MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV
Sbjct: 1  MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV 60

Query: 61 SDHHHLDTFGFKNNNNQ 78
          SDHHHLDTFGFKNNNNQ
Sbjct: 61 SDHHHLDTFGFKNNNNQ 77

[Close]

BLAST of Spo18468.1 vs. NCBI nr
Match: gi|731317993|ref|XP_010669482.1| (PREDICTED: basic leucine zipper 9 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 68.9 bits (167), Expect = 4.700e-9
Identity = 47/98 (47.96%), Postives = 55/98 (56.12%), Query Frame = 1


		  
Query: 1   MNHQKPTLYA----GNHHMKRSPSELALHALVNNNPTVV-----------DHPHH-SLF- 60
           MNHQKP ++     GN+ MKRSPSEL L ALVNNNPT             DH HH +LF 
Sbjct: 5   MNHQKPAVFGPGPDGNNPMKRSPSELVLQALVNNNPTATIKSFHHDHDHDDHHHHPALFA 64

Query: 61  -YDHDHTAGFVDPTAAVVSDHHHLDTFGFKNNNNQVCS 81
            Y   H    + PTAAVVSD  H+   GFKN  + + S
Sbjct: 65  NYHDHHQQHLLHPTAAVVSD-DHIAFDGFKNQQDIINS 101

[Close]

BLAST of Spo18468.1 vs. NCBI nr
Match: gi|870866845|gb|KMT17764.1| (hypothetical protein BVRB_2g035120 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 68.6 bits (166), Expect = 6.100e-9
Identity = 46/93 (49.46%), Postives = 53/93 (56.99%), Query Frame = 1


		  
Query: 1  MNHQKPTLYA----GNHHMKRSPSELALHALVNNNPTVV-----------DHPHH-SLF- 60
          MNHQKP ++     GN+ MKRSPSEL L ALVNNNPT             DH HH +LF 
Sbjct: 1  MNHQKPAVFGPGPDGNNPMKRSPSELVLQALVNNNPTATIKSFHHDHDHDDHHHHPALFA 60

Query: 61 -YDHDHTAGFVDPTAAVVSDHHHLDTFGFKNNN 76
           Y   H    + PTAAVVSD  H+   GFKN +
Sbjct: 61 NYHDHHQQHLLHPTAAVVSD-DHIAFDGFKNQD 92

[Close]

BLAST of Spo18468.1 vs. NCBI nr
Match: gi|731317995|ref|XP_010669483.1| (PREDICTED: basic leucine zipper 9 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 68.6 bits (166), Expect = 6.100e-9
Identity = 46/93 (49.46%), Postives = 53/93 (56.99%), Query Frame = 1


		  
Query: 1  MNHQKPTLYA----GNHHMKRSPSELALHALVNNNPTVV-----------DHPHH-SLF- 60
          MNHQKP ++     GN+ MKRSPSEL L ALVNNNPT             DH HH +LF 
Sbjct: 5  MNHQKPAVFGPGPDGNNPMKRSPSELVLQALVNNNPTATIKSFHHDHDHDDHHHHPALFA 64

Query: 61 -YDHDHTAGFVDPTAAVVSDHHHLDTFGFKNNN 76
           Y   H    + PTAAVVSD  H+   GFKN +
Sbjct: 65 NYHDHHQQHLLHPTAAVVSD-DHIAFDGFKNQD 96

[Close]

BLAST of Spo18468.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVQ1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_028880 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.300e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


		  
Query: 1  MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV 60
          MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV
Sbjct: 1  MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV 60

Query: 61 SDHHHLDTFGFKNNNNQ 78
          SDHHHLDTFGFKNNNNQ
Sbjct: 61 SDHHHLDTFGFKNNNNQ 77

[Close]

BLAST of Spo18468.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RU60_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_028880 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.300e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


		  
Query: 1  MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV 60
          MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV
Sbjct: 1  MNHQKPTLYAGNHHMKRSPSELALHALVNNNPTVVDHPHHSLFYDHDHTAGFVDPTAAVV 60

Query: 61 SDHHHLDTFGFKNNNNQ 78
          SDHHHLDTFGFKNNNNQ
Sbjct: 61 SDHHHLDTFGFKNNNNQ 77

[Close]

BLAST of Spo18468.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D084_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g035120 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.300e-9
Identity = 46/93 (49.46%), Postives = 53/93 (56.99%), Query Frame = 1


		  
Query: 1  MNHQKPTLYA----GNHHMKRSPSELALHALVNNNPTVV-----------DHPHH-SLF- 60
          MNHQKP ++     GN+ MKRSPSEL L ALVNNNPT             DH HH +LF 
Sbjct: 1  MNHQKPAVFGPGPDGNNPMKRSPSELVLQALVNNNPTATIKSFHHDHDHDDHHHHPALFA 60

Query: 61 -YDHDHTAGFVDPTAAVVSDHHHLDTFGFKNNN 76
           Y   H    + PTAAVVSD  H+   GFKN +
Sbjct: 61 NYHDHHQQHLLHPTAAVVSD-DHIAFDGFKNQD 92

The following BLAST results are available for this feature:

BLAST of Spo18468.1 vs. NCBI nr
BLAST of Spo18468.1 vs. UniProtKB/TrEMBL
BLAST of Spo18468.1 vs. ExPASy Swiss-Prot
BLAST of Spo18468.1 vs. TAIR (Arabidopsis)

BLAST of Spo18468.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902233324\|gb\|KNA22998.1\|	3.3e-39	100.	hypothetical protein SOVF_0288...	[more]
gi\|902233325\|gb\|KNA22999.1\|	3.3e-39	100.	hypothetical protein SOVF_0288...	[more]
gi\|731317993\|ref\|XP_010669482.1\|	4.7e-9	47.9	PREDICTED: basic leucine zippe...	[more]
gi\|870866845\|gb\|KMT17764.1\|	6.1e-9	49.4	hypothetical protein BVRB_2g03...	[more]
gi\|731317995\|ref\|XP_010669483.1\|	6.1e-9	49.4	PREDICTED: basic leucine zippe...	[more]

BLAST of Spo18468.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3


Match Name	E-value	Identity	Description
A0A0K9RVQ1_SPIOL	2.3e-39	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9RU60_SPIOL	2.3e-39	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8D084_BETVU	4.3e-9	49.4	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo18468.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo18468.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0043087	regulation of GTPase activity
biological_process	GO:0008152	metabolic process
biological_process	GO:0051013	microtubule severing
biological_process	GO:0009451	RNA modification
biological_process	GO:0006457	protein folding
biological_process	GO:0009408	response to heat
biological_process	GO:0043622	cortical microtubule organization
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0010091	trichome branching
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006810	transport
biological_process	GO:0006952	defense response
biological_process	GO:0006972	hyperosmotic response
biological_process	GO:0010951	negative regulation of endopeptidase activity
biological_process	GO:0009409	response to cold
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0006508	proteolysis
biological_process	GO:0009825	multidimensional cell growth
biological_process	GO:0043547	positive regulation of GTPase activity
biological_process	GO:0033512	L-lysine catabolic process to acetyl-CoA via saccharopine
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0018108	peptidyl-tyrosine phosphorylation
biological_process	GO:0009816	defense response to bacterium, incompatible interaction
biological_process	GO:0034220	ion transmembrane transport
biological_process	GO:0050665	hydrogen peroxide biosynthetic process
biological_process	GO:0009085	lysine biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0016926	protein desumoylation
biological_process	GO:0009750	response to fructose
biological_process	GO:0009744	response to sucrose
biological_process	GO:0044070	regulation of anion transport
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0006821	chloride transport
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005874	microtubule
cellular_component	GO:0005773	vacuole
cellular_component	GO:0032588	trans-Golgi network membrane
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0045298	tubulin complex
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008017	microtubule binding
molecular_function	GO:0008430	selenium binding
molecular_function	GO:0005488	binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005096	GTPase activator activity
molecular_function	GO:0008568	microtubule-severing ATPase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0047130	saccharopine dehydrogenase (NADP+, L-lysine-forming) activity
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004715	non-membrane spanning protein tyrosine kinase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0047131	saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity
molecular_function	GO:0004755	saccharopine dehydrogenase (NADP+, L-glutamate-forming) activity
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0050897	cobalt ion binding
molecular_function	GO:0005247	voltage-gated chloride channel activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo24607	0.75	Barchart \| Table
Spo02893	0.75	Barchart \| Table
Spo11339	0.75	Barchart \| Table
Spo14968	0.74	Barchart \| Table
Spo04907	0.72	Barchart \| Table
Spo01578	0.71	Barchart \| Table
Spo00236	0.70	Barchart \| Table
Spo18997	0.70	Barchart \| Table
Spo19687	0.70	Barchart \| Table
Spo04116	0.69	Barchart \| Table
Spo21214	0.69	Barchart \| Table
Spo24364	0.69	Barchart \| Table
Spo10042	0.69	Barchart \| Table
Spo25614	0.68	Barchart \| Table
Spo17936	0.68	Barchart \| Table
Spo22112	0.68	Barchart \| Table
Spo05602	0.67	Barchart \| Table
Spo06838	0.67	Barchart \| Table
Spo10156	0.67	Barchart \| Table
Spo04413	0.67	Barchart \| Table
Spo18575	0.67	Barchart \| Table
Spo18629	0.67	Barchart \| Table
Spo26424	0.67	Barchart \| Table
Spo27198	0.67	Barchart \| Table
Spo00570	0.67	Barchart \| Table
Spo24752	0.66	Barchart \| Table
Spo20695	0.66	Barchart \| Table
Spo12999	0.66	Barchart \| Table
Spo12376	0.66	Barchart \| Table
Spo10449	0.66	Barchart \| Table
Spo15410	0.66	Barchart \| Table
Spo17856	0.66	Barchart \| Table
Spo08541	0.65	Barchart \| Table
Spo05135	0.65	Barchart \| Table
Spo05728	0.65	Barchart \| Table
Spo13184	0.65	Barchart \| Table
Spo21729	0.65	Barchart \| Table
Spo15911	0.65	Barchart \| Table