Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGACGAATTGACGGCTCTCCATTTATTAAATAAAAGCTAAAATGGCTATAATTAGGTTCGTCACACTCCTCCTTCTACCCTTACCCAATTACCCGTTGACACCTGCAAATCCGATCAAAAACCAAAAAGTAGGAGAGAGAAAGTACCTTCGAAGTTAGTAACAATGGCGTCGACCACGGCGGCGATTAAGCTGGCGATTGGAGACGCCGTACTGACCGCCATGTGGGTGTTCTCGGCGTCAACCATCGGTCTTTTCACCTACCTAATCTCTAATGCTCTTGGAGTTCAAGGCCCTTTAACCCTAGTTATCACCACCTCAATCGTCGCTACTCTAGTGTTTACTTACACCTTCGTCGGCCAACTCCTCGGTGGCGCTAGCTTTAATCCTACTGGAACTGCTGCCTTTTATGCTGCTGGCCTTAGTGGCGATTCTCTCCTCTCGTTGGCTCTCCGCTTCCCTGCTCAGGTCGATTTTGATTGTTTGTGAATAATTTTGTTTAATTTGATGCTTAAAAGTCTTGATTCCTGAGCAATTTTGCGTAATTCATTATTAATGCTAAAATGTCGAGTTATATAATGATCAATGCTTAAGTGTTGAATTTGGAAGGCTGAATTAATGATAAATGATTCCTAAAATGTTAAGCTTATTTTTTTTGTTAAATGAATTAATTATATGCAATGCTGTGATAATAATTGGATATCTTCGACAATTTATTGGCTAAGCTTAATTGTAGTTATAGTTCTATATGCTAAGGTGATAGTTTCAGTTAAGATGGAAATTTGACTGATAAAGTTGACTTGAAAGTTTAACTTGATCTCTTAAAGAAAACGCCGCCAAGACTTTACTGGCTAAGCTAGTATTTTTGGACGTAGCCTGTGTTACAATTCTGCCAAGAGTTTTACGCAGGTGGTGCCTGGTGGTGGTGTTTTGGTTTCATCTAGATCGGAGATCATGTTTGATATAGTTGACTTATCTTTATGGTGAGGCTGTTTACAAAGAAATGTTTAAATGCGAGAAATTGCGATTTGAGATGTCCTCAATGTTTTGAGGTAGGTGTGGGACTAGTAATATGGGCCAAACACTTTGGTCTAAAATGAATGTAGGGCAGTAAGGCAGTAACTGAATTCTTTTTCTTCTGGAAAGTTTATGCTTATGATTTGTTTTTTATGCTAATCATGGTGATCTCTCGATATTTGGTTCTCGACTTCTTTTTAACGTACATGATATGAAATGAAACATTGTCAGCCTGCTAGGTTTAGCTACATCAATGGGTGCAATTCATCATCTTTGCTTGATTTTACTAAAACATCAGTGGTCAACACCTTTCATCTGACTGGTTTTTAATTATCTATTTGTCTTGCTTCAGCCACGTATGCGCAATTACGCACTACTAAATAGTACGAAATAGTGAGTTTTTACTTCTCTTTAATTGGATGTGTAGTTTTCCTAAAATTAGATGTGCCTGATGTATCAGTTTCTCAATGTTCTGACATTTAACTCAGTCAAATATTTTGTAAGAATTTTATTTATATTCTTCCTAATACGACTCCATAATTGTGCAAAAATTCCAATGTTAGTTAAGCGTTTAAAGTCACCTATTGGCTTTTCTTTGACTATGCTAGTTTGCTACATATTGACTATGCTAGTAGTCACATGACTCACATTCTCTGTGCAACGAAGTTTTGTTGAAAAGAAAAATAGAGTTAAGAGGAAACTGGTAGTTGGGGATAAATCCATCAAATTTTACTGATTGTTTCTGAAGATATGAACTTGTCTTTTGGCAGGCTGCTGGTGCTGTTGCCGGTGCAATAGCAATCTCGGAAGTGATGCCAAGTCAGTACAAACACATGTTGGGAGGACCTTCTATTAAAGTGGACCTGCATACTGCAGCCATGGCAGAAGGGGTATTGACTTTTCTTATAACATTGGCTGTCCTCATCATTATCATCAGGATTCCAGGTGGTATGTTTGTGAAGACCTGGCTGCTTGCCATGGCTACTGTGACTTTGGTTATTGCTGGCTCCAGTTATACCGGTCCTTCAATGAATCCTGCTAATGTGAGTATATTTTTGCTGAATTACTATTGACATATCTGTTCTAACTCCCCTAAGCTAAATCCTTTCAGTTGCTTAAAAACATGTCTCCAGTTGCTGGTTATGTGCAACAATATATTTAAGTCGTTTCATCTACTATAATGTTACTAACTCACACATTTACAATAGCTCTTCAATCATACTCTGGATTAGGGTTTGTCTTGAAATTTGGTTTAACAATTCAGGTTCAAAACAGGGTTTTTATGTCCTGAAGGACCAATTAAACTAGGAACAGTGACCAGATTTCCATTTATATCTTCTTCCGTTTCTTTGGCGTCACCGCCCTTTCTATTTTTGTTTCTTTCTCCATTTAGAATATGCTGTTCACCAAGTGAGAGTAGTTACCAATTTACGCAACAGGACTGCTGATTCTTGTTTCTCCTCTTTTCCGAAAAGAAGGATTAAAATACTTAACATGGCACAGTGGAGAAGTACATACATCAGTGATGTATATTATAAACACCCCTTAAAAGAGACCATATGAAAGGGATAACAGCAGAAATGAGGACCTTGTGATTTATCATTTATGCTTCGTATTAGACCTATGTGCCCAACAATATTTGAGGAAATATGAATTAAATTTGGTTCAAACAGTAGAAAAGTGCTATTAGTAATATAGTGGCCAGACACTTCCTGTATATGAGTAGTACCGCTTTACTGATTTGGTCTACTTTTGCTGTTGCAATTCTATTTGGTAAATCAACAGTATTCCAATTTTTTTTTTGAATCAGCTATAACCTTTAAATTAAGCACAAACCTTAATGGATTACGTTGATGTTGTTGCACATGCAACTGGCCAATGGCCAATGGCCATTAGGTATTGTTTATGGCATTGATGGAGCAAATTTAGGCATGCTATGCTACGGGCCTACGGTTATGTGCCATGAATATGAATACTTTGTCCTTTAATGTCTTCCATCTAAGACTCCGTAGTTTGGTCTGCATGTTCTGAAGGCTATATGGTTTAGACGTTAAAATAAAGGAGATAATTTTTTCAACAATTTGTTTCTCTGACAGAATTACTGCCTAGTATAAAAACTAATTGCGTCTTTTGTTGTTCTTGCAGGCGTTTGGATGGGCATACATTAGAAAACAGCATAATACATGGGATCAGTTATATGTTTACTGGATCTGTCCCTTCATTGGTGCAATTGGGGCTGCTTGGGTGTTCCGATTCATCTACCCACTACCTAAAAAGCAGAAGAAAGCTCCAAAGAACAGGAAAGCAGAGTAG TGACGAATTGACGGCTCTCCATTTATTAAATAAAAGCTAAAATGGCTATAATTAGGTTCGTCACACTCCTCCTTCTACCCTTACCCAATTACCCGTTGACACCTGCAAATCCGATCAAAAACCAAAAAGTAGGAGAGAGAAAGTACCTTCGAAGTTAGTAACAATGGCGTCGACCACGGCGGCGATTAAGCTGGCGATTGGAGACGCCGTACTGACCGCCATGTGGGTGTTCTCGGCGTCAACCATCGGTCTTTTCACCTACCTAATCTCTAATGCTCTTGGAGTTCAAGGCCCTTTAACCCTAGTTATCACCACCTCAATCGTCGCTACTCTAGTGTTTACTTACACCTTCGTCGGCCAACTCCTCGGTGGCGCTAGCTTTAATCCTACTGGAACTGCTGCCTTTTATGCTGCTGGCCTTAGTGGCGATTCTCTCCTCTCGTTGGCTCTCCGCTTCCCTGCTCAGGCTGCTGGTGCTGTTGCCGGTGCAATAGCAATCTCGGAAGTGATGCCAAGTCAGTACAAACACATGTTGGGAGGACCTTCTATTAAAGTGGACCTGCATACTGCAGCCATGGCAGAAGGGGTATTGACTTTTCTTATAACATTGGCTGTCCTCATCATTATCATCAGGATTCCAGGTGGTATGTTTGTGAAGACCTGGCTGCTTGCCATGGCTACTGTGACTTTGGTTATTGCTGGCTCCAGTTATACCGGTCCTTCAATGAATCCTGCTAATGCGTTTGGATGGGCATACATTAGAAAACAGCATAATACATGGGATCAGTTATATGTTTACTGGATCTGTCCCTTCATTGGTGCAATTGGGGCTGCTTGGGTGTTCCGATTCATCTACCCACTACCTAAAAAGCAGAAGAAAGCTCCAAAGAACAGGAAAGCAGAGTAG ATGGCGTCGACCACGGCGGCGATTAAGCTGGCGATTGGAGACGCCGTACTGACCGCCATGTGGGTGTTCTCGGCGTCAACCATCGGTCTTTTCACCTACCTAATCTCTAATGCTCTTGGAGTTCAAGGCCCTTTAACCCTAGTTATCACCACCTCAATCGTCGCTACTCTAGTGTTTACTTACACCTTCGTCGGCCAACTCCTCGGTGGCGCTAGCTTTAATCCTACTGGAACTGCTGCCTTTTATGCTGCTGGCCTTAGTGGCGATTCTCTCCTCTCGTTGGCTCTCCGCTTCCCTGCTCAGGCTGCTGGTGCTGTTGCCGGTGCAATAGCAATCTCGGAAGTGATGCCAAGTCAGTACAAACACATGTTGGGAGGACCTTCTATTAAAGTGGACCTGCATACTGCAGCCATGGCAGAAGGGGTATTGACTTTTCTTATAACATTGGCTGTCCTCATCATTATCATCAGGATTCCAGGTGGTATGTTTGTGAAGACCTGGCTGCTTGCCATGGCTACTGTGACTTTGGTTATTGCTGGCTCCAGTTATACCGGTCCTTCAATGAATCCTGCTAATGCGTTTGGATGGGCATACATTAGAAAACAGCATAATACATGGGATCAGTTATATGTTTACTGGATCTGTCCCTTCATTGGTGCAATTGGGGCTGCTTGGGTGTTCCGATTCATCTACCCACTACCTAAAAAGCAGAAGAAAGCTCCAAAGAACAGGAAAGCAGAGTAG MASTTAAIKLAIGDAVLTAMWVFSASTIGLFTYLISNALGVQGPLTLVITTSIVATLVFTYTFVGQLLGGASFNPTGTAAFYAAGLSGDSLLSLALRFPAQAAGAVAGAIAISEVMPSQYKHMLGGPSIKVDLHTAAMAEGVLTFLITLAVLIIIIRIPGGMFVKTWLLAMATVTLVIAGSSYTGPSMNPANAFGWAYIRKQHNTWDQLYVYWICPFIGAIGAAWVFRFIYPLPKKQKKAPKNRKAE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo18499.1 vs. NCBI nr
Match: gi|902213847|gb|KNA17351.1| (hypothetical protein SOVF_080740 [Spinacia oleracea]) HSP 1 Score: 467.2 bits (1201), Expect = 1.700e-128 Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1
BLAST of Spo18499.1 vs. NCBI nr
Match: gi|731318176|ref|XP_010669580.1| (PREDICTED: aquaporin SIP1-2 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 412.5 bits (1059), Expect = 5.100e-112 Identity = 211/247 (85.43%), Postives = 228/247 (92.31%), Query Frame = 1
BLAST of Spo18499.1 vs. NCBI nr
Match: gi|731318174|ref|XP_010669579.1| (PREDICTED: aquaporin SIP1-2 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 334.3 bits (856), Expect = 1.800e-88 Identity = 170/241 (70.54%), Postives = 201/241 (83.40%), Query Frame = 1
BLAST of Spo18499.1 vs. NCBI nr
Match: gi|720060638|ref|XP_010274927.1| (PREDICTED: aquaporin SIP1-2 [Nelumbo nucifera]) HSP 1 Score: 334.3 bits (856), Expect = 1.800e-88 Identity = 166/234 (70.94%), Postives = 203/234 (86.75%), Query Frame = 1
BLAST of Spo18499.1 vs. NCBI nr
Match: gi|870866691|gb|KMT17624.1| (hypothetical protein BVRB_2g035730 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 327.0 bits (837), Expect = 2.800e-86 Identity = 165/229 (72.05%), Postives = 193/229 (84.28%), Query Frame = 1
BLAST of Spo18499.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCV4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_080740 PE=3 SV=1) HSP 1 Score: 467.2 bits (1201), Expect = 1.200e-128 Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1
BLAST of Spo18499.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CZU2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g035730 PE=3 SV=1) HSP 1 Score: 327.0 bits (837), Expect = 2.000e-86 Identity = 165/229 (72.05%), Postives = 193/229 (84.28%), Query Frame = 1
BLAST of Spo18499.1 vs. UniProtKB/TrEMBL
Match: Q107W9_VITVI (Small basic intrinsic protein 1 OS=Vitis vinifera GN=VIT_08s0007g07680 PE=2 SV=1) HSP 1 Score: 324.7 bits (831), Expect = 9.700e-86 Identity = 166/235 (70.64%), Postives = 197/235 (83.83%), Query Frame = 1
BLAST of Spo18499.1 vs. UniProtKB/TrEMBL
Match: M1TFX6_CAMSI (Aquaporin protein AQU20 OS=Camellia sinensis PE=2 SV=1) HSP 1 Score: 322.0 bits (824), Expect = 6.300e-85 Identity = 166/233 (71.24%), Postives = 191/233 (81.97%), Query Frame = 1
BLAST of Spo18499.1 vs. UniProtKB/TrEMBL
Match: A0A145PRF6_9CARY (Aquaporin SIP OS=Tamarix hispida GN=SIP1 PE=2 SV=1) HSP 1 Score: 315.5 bits (807), Expect = 5.900e-83 Identity = 152/231 (65.80%), Postives = 193/231 (83.55%), Query Frame = 1
BLAST of Spo18499.1 vs. ExPASy Swiss-Prot
Match: SIP12_MAIZE (Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1) HSP 1 Score: 273.1 bits (697), Expect = 3.000e-72 Identity = 138/237 (58.23%), Postives = 184/237 (77.64%), Query Frame = 1
BLAST of Spo18499.1 vs. ExPASy Swiss-Prot
Match: SIP11_ORYSJ (Aquaporin SIP1-1 OS=Oryza sativa subsp. japonica GN=SIP1-1 PE=2 SV=2) HSP 1 Score: 270.8 bits (691), Expect = 1.500e-71 Identity = 142/242 (58.68%), Postives = 182/242 (75.21%), Query Frame = 1
BLAST of Spo18499.1 vs. ExPASy Swiss-Prot
Match: SIP11_MAIZE (Aquaporin SIP1-1 OS=Zea mays GN=SIP1-1 PE=2 SV=1) HSP 1 Score: 266.9 bits (681), Expect = 2.200e-70 Identity = 143/246 (58.13%), Postives = 184/246 (74.80%), Query Frame = 1
BLAST of Spo18499.1 vs. ExPASy Swiss-Prot
Match: SIP11_ARATH (Aquaporin SIP1-1 OS=Arabidopsis thaliana GN=SIP1-1 PE=2 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 8.200e-62 Identity = 129/237 (54.43%), Postives = 170/237 (71.73%), Query Frame = 1
BLAST of Spo18499.1 vs. ExPASy Swiss-Prot
Match: SIP12_ARATH (Probable aquaporin SIP1-2 OS=Arabidopsis thaliana GN=SIP1-2 PE=2 SV=1) HSP 1 Score: 223.8 bits (569), Expect = 2.100e-57 Identity = 126/242 (52.07%), Postives = 167/242 (69.01%), Query Frame = 1
BLAST of Spo18499.1 vs. TAIR (Arabidopsis)
Match: AT3G04090.1 (small and basic intrinsic protein 1A) HSP 1 Score: 238.4 bits (607), Expect = 4.600e-63 Identity = 129/237 (54.43%), Postives = 170/237 (71.73%), Query Frame = 1
BLAST of Spo18499.1 vs. TAIR (Arabidopsis)
Match: AT5G18290.1 (Aquaporin-like superfamily protein) HSP 1 Score: 223.8 bits (569), Expect = 1.200e-58 Identity = 126/242 (52.07%), Postives = 167/242 (69.01%), Query Frame = 1
BLAST of Spo18499.1 vs. TAIR (Arabidopsis)
Match: AT3G56950.2 (small and basic intrinsic protein 2;1) HSP 1 Score: 114.4 bits (285), Expect = 1.000e-25 Identity = 76/235 (32.34%), Postives = 120/235 (51.06%), Query Frame = 1
BLAST of Spo18499.1 vs. TAIR (Arabidopsis)
Match: AT2G16850.1 (plasma membrane intrinsic protein 2;8) HSP 1 Score: 52.4 bits (124), Expect = 4.700e-7 Identity = 60/233 (25.75%), Postives = 98/233 (42.06%), Query Frame = 1
BLAST of Spo18499.1 vs. TAIR (Arabidopsis)
Match: AT2G37170.1 (plasma membrane intrinsic protein 2) HSP 1 Score: 52.4 bits (124), Expect = 4.700e-7 Identity = 50/191 (26.18%), Postives = 82/191 (42.93%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo18499.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo18499.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo18499.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo18499.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|