Spo18517 (gene) | SpinachBase

Overview


Name	Spo18517
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	F-box domain containing protein
Location	chr3 : 20056053 .. 20059760 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAGTTTGGACACGCAACCTCCGTGGCATTTTAAAAATCTCTTAATTTTTGCAATATCATCTCATCATGGAAAGTCGACCATTACTATGACAAATCCAGAACCCAAAAGAAGAAGATGAAGCAGTTGTCTTGCGCCCTTATCTTTGATCCTCCTTCCGACATCGCCTTCCGAGTCGCTGCTTTGTTACCGGTAAATTATGAATAATCGTAAGTTTGATGATTTTACAGTTATTTTTTGGGTAAAATTTGTAATTATATAATACTTCGTATGATTATTATTGGAAATATTTACAGGTAAGAGATGTTTGTGCGCTTGGAAGTTGCTCGAAGTTTTGGAGGGAACTTTGTGGAACGGATCAACTATGGATTTCCATGATTAAACAGAGATGGCCGTCTCTTCGTTTGTCTGACCACCCCTTCAATTCTGATGACTCAATTTCTCAACCCCACTTTAGGGTAATTTTATTTATCTTTCTTTTTTAATTATTTTTTCGGAAATTTTAATCTCGTTTTTTTGATAAGTTGTCATCTTTCCTGATACATGATAAACCAATAAAGGGTACTGTATTTGATAAGATGATAAGATCATGTTGTGCCCTTGATTTGATTATAGAGGGTTTGGGTCTGACAACCAATTTGGGCGGAGGGACCAAGTATAATGGTATTGCTTCAATATAAAATATTTGCAAATTATGTACATTGATTTTTGCTATGATGTTAGAAGATATAGAAATAGAGGTGAAGGGATATGATGGGATTCTGAATAAAATTTGGTACCTAGCAGTCTAGCAGCCGGCAAATCTTCTTGAGTTAACAAACTAATTGATCCTGAATTAAACAAAAGATATACCATTTTCATGTTATAATTCGCTTTTTTGGTTCGTAGTTCGTAGAGTGATTAGGGAATTAGACAACACTTGTCATGCACAGCTTATTATTGAGGATATTCCTTAGGTCCTCTGGTGATATACACTACAAGACCAGGTTTATAGCAAGTTCTTCTGACTGGGAACTTGTTCCTCAATTTGCTACTTGCCACCCTTTTACATCAACAATTGTTGGCATCATTGATTAGTGTAGACAAGCTTAAGAATAACTATACACATTGGCTTCGAGTCATCTAGGTCAGGGCCGTCTCTCGCAATTTGGAGGCCCTGTGCTAAAATACAGATATTGGGCTTCAATAAATTTTTACGAGTAATTATTTAATATAAAACACATAATTATTATATTAATATTGTTAATTATTATATTAATATTGTTTTTTTTATACAAAATATAAAGTCAAATTAATAATATGGTATAACGTTTTATGTGTGATGGTTTGAGAAAATTGATGGACATGAAAAAAGCAAATAAAAAAAGGGGGCATGAGAGGAATTGAACCTTGGTCTTGGCTACGACACTATTATTTCTTTACCAACTGGGACAAAGATTACTTAATGCATAATAAAGGAGCTGTTAAATATATAATATTTTTTCTTGGGGGTTTAACCAACATAATTTCTTTTTGGGGCCCCAAAATTTTGTGGCCCGGTGCTGGAGGTCCGCCTGGACCTCCCTTTAGCCGGCCCTGATCTAGGTGCATTTTACATGTTCTTGTTTTTCTTCTATTTTTCGCTACATTATTGATTATTCTACAATCCCATGATATTTAACTGGTTTTAGGTTACCTTTTACTTAAAACATCGAAGTAGTTCAGTATTCTTTTCTGTTCCTTTGATTGTCCTGCTGTCAAACACGCTGTCGAGACAGTTTTTCAATACACCTTTGGAATATTTCGCCTTACTATGGTGAATTTAGGATGCAGAAGCCTGCCATATTTGAGATATTTAGTTGCAACACTATCAATTAAATTGTTAATTTTGTTTATTAATAATCCTAATAGGATTTGAAGGGCTTTTACGTGAAAAGACACAATGAGGTGGGAAGCAGAGTAGTGAAATTTGTGGAGCAATGGTCCTTCTCTGTTTCAGTGGAGGTTCAGGGTTATTTGAAAGCAATGAAAGAGCTGTGTTCAATGCAGGTTGATTTTATGGATGTGCAGATGTTTCTGTTCAAGCAAGAGCTGAATGTGTTTCTGAACTTGGTAGGACTGCACTATTGTGTCAACTGGCTTGGAGTGCCGGTAAGATATGTATTATGCTCTTCATACTACTCATTTTAAAAAAATATAAGATTTATGTGCACTGATATTAGCTTGGGAAAATTAAGGTGCAATTCAACTTTGGAAATCAATGTCTTTTGTTGTGATAAAAAGAAAAAGTACTGCTGTTGTGTCGTATTATTTTGCGCATTTGCCTTTATTGTTTCTCCCAAATTACTTGATCTTCCCTGGCCTACTATGGCAGGGATTTTCAATCATCTCTTTATCTGATCTTCCCTGCTGCAATACTGTCTCTGTCATTATAGGCCCTTATATTATTTTTATGCCATACCCAATAACCCAAGTCTCTTGATGTATCTTTAAAGTTTGTTTCTTTTGGAATCAAGAAATTGTAAGGGATTTGAGTTCAAATCCCTAAACCTGAAACCACTGGCTTGTCAGAGTTGAGTAAAGTTTTGGAATGGTTAGGTAATCCCTTGGTCCCACCAAAGAGCTGGTTTCCCAGATGAAGGTTGGAAGTGATCTGTCTAGTAACTTGAGTGAGAATTTTAAGATTTCAATCATTAGGTCAGTTCCTAACTGGATTAGCGTTGCCTGTGTCGTATGGTTGGTTTTGATTAGGTCATTTAATTAGGCACACCTGGCATCAAAAATCATATGGGACTAGAGGGTGTATATTTGTTGGCTCATGTTCTATGACCCCTTCTTGATGCTCAGAAGCTTGAGAAAGTTGGCTAGCATCTGAGGTGCCAGTGAAGCATTCGTTTGAATATTTTAAGCTTGAGGACTTGCTGACAATCAACCTTTTAAGAAACTTTTTGTTTTTCACTATGATGAAGTTCTGAAATCATATCGAATCTATGCTCAGCATTTCTGTCTGTCACTCTAATAAAGTTGCAGAAGATTTTTGAATCAGCAATTAGATTAGATAGTGCATCTCAGAAAAAGGATTTAGAAATAGAAAGTATTACTAAGGAATAGTATTTAAACTTTGGGTTGTATATGGAATTGTATTTTTTGTTATGCAGCTACAACATGTTATGGATGCCCTGCAAGGCTCAGACATATCTGAGAGACAAGTATCAATAAAATGGTGGAAAGTGGGGCGATGGAGTAACGGGTTTCGTTTAAGAGATGAGTCTCATTATCGTGTAGTCTCGTTGGCTGATCTTGCTACAAAAAAACAAGAGGATGTTCTTGGGGTTCTTTCCAGAGGTGCTGTCTATGAGGTCATACGCGTCCAGATTTCTGTTGCATCCCCATTATCTGTCCCTTGGACATGCCACACCTCCCTTTTACCTCAACGTTAACCTTAGCTTTGCTTGTTCATGGTTTATGGCTTTTATGTACATAATATATACAGTTTAGCAACATGGATGCTTGTATGAGTTGTATATATGTACAGAAAACTATTGTACAGGACATATTTATTTATTTTTTAAAAAAAACTACGTTCTACCTTTCAACCTGGATGGTACCTATTCATCCAAAATGATGGTCGTCTAGTTTTACTTTCCTAATCAGAGCTGGACGTAGCTAACAAATTTGTATATATATTAAAAGTATGTTACTTTGATGATGTTGTTGATTTGGCAATGA

mRNA sequence

TTGAAGTTTGGACACGCAACCTCCGTGGCATTTTAAAAATCTCTTAATTTTTGCAATATCATCTCATCATGGAAAGTCGACCATTACTATGACAAATCCAGAACCCAAAAGAAGAAGATGAAGCAGTTGTCTTGCGCCCTTATCTTTGATCCTCCTTCCGACATCGCCTTCCGAGTCGCTGCTTTGTTACCGGTAAGAGATGTTTGTGCGCTTGGAAGTTGCTCGAAGTTTTGGAGGGAACTTTGTGGAACGGATCAACTATGGATTTCCATGATTAAACAGAGATGGCCGTCTCTTCGTTTGTCTGACCACCCCTTCAATTCTGATGACTCAATTTCTCAACCCCACTTTAGGGATTTGAAGGGCTTTTACGTGAAAAGACACAATGAGGTGGGAAGCAGAGTAGTGAAATTTGTGGAGCAATGGTCCTTCTCTGTTTCAGTGGAGGTTCAGGGTTATTTGAAAGCAATGAAAGAGCTGTGTTCAATGCAGGTTGATTTTATGGATGTGCAGATGTTTCTGTTCAAGCAAGAGCTGAATGTGTTTCTGAACTTGGTAGGACTGCACTATTGTGTCAACTGGCTTGGAGTGCCGCTACAACATGTTATGGATGCCCTGCAAGGCTCAGACATATCTGAGAGACAAGTATCAATAAAATGGTGGAAAGTGGGGCGATGGAGTAACGGGTTTCGTTTAAGAGATGAGTCTCATTATCGTGTAGTCTCGTTGGCTGATCTTGCTACAAAAAAACAAGAGGATGTTCTTGGGGTTCTTTCCAGAGGTGCTGTCTATGAGGTCATACGCGTCCAGATTTCTGTTGCATCCCCATTATCTGTCCCTTGGACATGCCACACCTCCCTTTTACCTCAACGTTAACCTTAGCTTTGCTTGTTCATGGTTTATGGCTTTTATGTACATAATATATACAGTTTAGCAACATGGATGCTTGTATGAGTTGTATATATGTACAGAAAACTATTGTACAGGACATATTTATTTATTTTTTAAAAAAAACTACGTTCTACCTTTCAACCTGGATGGTACCTATTCATCCAAAATGATGGTCGTCTAGTTTTACTTTCCTAATCAGAGCTGGACGTAGCTAACAAATTTGTATATATATTAAAAGTATGTTACTTTGATGATGTTGTTGATTTGGCAATGA

Coding sequence (CDS)

ATGAAGCAGTTGTCTTGCGCCCTTATCTTTGATCCTCCTTCCGACATCGCCTTCCGAGTCGCTGCTTTGTTACCGGTAAGAGATGTTTGTGCGCTTGGAAGTTGCTCGAAGTTTTGGAGGGAACTTTGTGGAACGGATCAACTATGGATTTCCATGATTAAACAGAGATGGCCGTCTCTTCGTTTGTCTGACCACCCCTTCAATTCTGATGACTCAATTTCTCAACCCCACTTTAGGGATTTGAAGGGCTTTTACGTGAAAAGACACAATGAGGTGGGAAGCAGAGTAGTGAAATTTGTGGAGCAATGGTCCTTCTCTGTTTCAGTGGAGGTTCAGGGTTATTTGAAAGCAATGAAAGAGCTGTGTTCAATGCAGGTTGATTTTATGGATGTGCAGATGTTTCTGTTCAAGCAAGAGCTGAATGTGTTTCTGAACTTGGTAGGACTGCACTATTGTGTCAACTGGCTTGGAGTGCCGCTACAACATGTTATGGATGCCCTGCAAGGCTCAGACATATCTGAGAGACAAGTATCAATAAAATGGTGGAAAGTGGGGCGATGGAGTAACGGGTTTCGTTTAAGAGATGAGTCTCATTATCGTGTAGTCTCGTTGGCTGATCTTGCTACAAAAAAACAAGAGGATGTTCTTGGGGTTCTTTCCAGAGGTGCTGTCTATGAGGTCATACGCGTCCAGATTTCTGTTGCATCCCCATTATCTGTCCCTTGGACATGCCACACCTCCCTTTTACCTCAACGTTAA

Protein sequence

MKQLSCALIFDPPSDIAFRVAALLPVRDVCALGSCSKFWRELCGTDQLWISMIKQRWPSLRLSDHPFNSDDSISQPHFRDLKGFYVKRHNEVGSRVVKFVEQWSFSVSVEVQGYLKAMKELCSMQVDFMDVQMFLFKQELNVFLNLVGLHYCVNWLGVPLQHVMDALQGSDISERQVSIKWWKVGRWSNGFRLRDESHYRVVSLADLATKKQEDVLGVLSRGAVYEVIRVQISVASPLSVPWTCHTSLLPQR

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo18517.1	Spo18517.1	mRNA

Homology

[Close]

BLAST of Spo18517.1 vs. NCBI nr
Match: gi|902237501|gb|KNA24830.1| (hypothetical protein SOVF_012160 [Spinacia oleracea])

HSP 1 Score: 520.4 bits (1339), Expect = 1.800e-144
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1


		  
Query: 1   MKQLSCALIFDPPSDIAFRVAALLPVRDVCALGSCSKFWRELCGTDQLWISMIKQRWPSL 60
           MKQLSCALIFDPPSDIAFRVAALLPVRDVCALGSCSKFWRELCGTDQLWISMIKQRWPSL
Sbjct: 1   MKQLSCALIFDPPSDIAFRVAALLPVRDVCALGSCSKFWRELCGTDQLWISMIKQRWPSL 60

Query: 61  RLSDHPFNSDDSISQPHFRDLKGFYVKRHNEVGSRVVKFVEQWSFSVSVEVQGYLKAMKE 120
           RLSDHPFNSDDSISQPHFRDLKGFYVKRHNEVGSRVVKFVEQWSFSVSVEVQGYLKAMKE
Sbjct: 61  RLSDHPFNSDDSISQPHFRDLKGFYVKRHNEVGSRVVKFVEQWSFSVSVEVQGYLKAMKE 120

Query: 121 LCSMQVDFMDVQMFLFKQELNVFLNLVGLHYCVNWLGVPLQHVMDALQGSDISERQVSIK 180
           LCSMQVDFMDVQMFLFKQELNVFLNLVGLHYCVNWLGVPLQHVMDALQGSDISERQVSIK
Sbjct: 121 LCSMQVDFMDVQMFLFKQELNVFLNLVGLHYCVNWLGVPLQHVMDALQGSDISERQVSIK 180

Query: 181 WWKVGRWSNGFRLRDESHYRVVSLADLATKKQEDVLGVLSRGAVYEVIRVQISVASPLSV 240
           WWKVGRWSNGFRLRDESHYRVVSLADLATKKQEDVLGVLSRGAVYEVIRVQISVASPLSV
Sbjct: 181 WWKVGRWSNGFRLRDESHYRVVSLADLATKKQEDVLGVLSRGAVYEVIRVQISVASPLSV 240

Query: 241 PWTCHTSLLPQR 253
           PWTCHTSLLPQR
Sbjct: 241 PWTCHTSLLPQR 252

[Close]

BLAST of Spo18517.1 vs. NCBI nr
Match: gi|731372609|ref|XP_010666397.1| (PREDICTED: uncharacterized protein LOC104883554 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 356.3 bits (913), Expect = 4.400e-95
Identity = 176/252 (69.84%), Postives = 203/252 (80.56%), Query Frame = 1


		  
Query: 1   MKQLSCALIFDPPSDIAFRVAALLPVRDVCALGSCSKFWRELCGTDQLWISMIKQRWPSL 60
           MK  SCA  FD P DIAF++A+ L VRDVCALGSCSKFWRELCG+D +W  + KQRWPSL
Sbjct: 29  MKHSSCAHTFDLPYDIAFKIASFLLVRDVCALGSCSKFWRELCGSDHIWAPLTKQRWPSL 88

Query: 61  RLSDHPFNSDDSISQPHFRDLKGFYVKRHNEVGSRVVKFVEQWSFSVSVEVQGYLKAMKE 120
            LSD+        SQPH R  K FY++RH+E+  RV+KFVE +S  VS+EVQ YL A++ 
Sbjct: 89  HLSDNSQIPHHLNSQPHIRGWKIFYIQRHHEMRIRVLKFVEHYS-CVSLEVQEYLAAIEG 148

Query: 121 LCSMQVDFMDVQMFLFKQELNVFLNLVGLHYCVNWLGVPLQHVMDALQGSDISERQVSIK 180
           LCSMQ DFMDVQ FL   +LNV LNLVGLHY +NWLGVPLQ VM+ALQGS+I++R+VSIK
Sbjct: 149 LCSMQADFMDVQTFLLNTDLNVLLNLVGLHYSINWLGVPLQRVMNALQGSNIADRKVSIK 208

Query: 181 WWKVGRWSNGFRLRDESHYRVVSLADLATKKQEDVLGVLSRGAVYEVIRVQISVASPLSV 240
           WWKVGRWSNGFRLRDESH+RVVSLAD AT K+E V GVLSRGAVYEVIRVQISVA PLSV
Sbjct: 209 WWKVGRWSNGFRLRDESHHRVVSLADFATNKEEHVRGVLSRGAVYEVIRVQISVAYPLSV 268

Query: 241 PWTCHTSLLPQR 253
           PWTC +S+ P R
Sbjct: 269 PWTCQSSVSPGR 279

[Close]

BLAST of Spo18517.1 vs. NCBI nr
Match: gi|870842825|gb|KMS96147.1| (hypothetical protein BVRB_001820 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 356.3 bits (913), Expect = 4.400e-95
Identity = 176/252 (69.84%), Postives = 203/252 (80.56%), Query Frame = 1


		  
Query: 1   MKQLSCALIFDPPSDIAFRVAALLPVRDVCALGSCSKFWRELCGTDQLWISMIKQRWPSL 60
           MK  SCA  FD P DIAF++A+ L VRDVCALGSCSKFWRELCG+D +W  + KQRWPSL
Sbjct: 1   MKHSSCAHTFDLPYDIAFKIASFLLVRDVCALGSCSKFWRELCGSDHIWAPLTKQRWPSL 60

Query: 61  RLSDHPFNSDDSISQPHFRDLKGFYVKRHNEVGSRVVKFVEQWSFSVSVEVQGYLKAMKE 120
            LSD+        SQPH R  K FY++RH+E+  RV+KFVE +S  VS+EVQ YL A++ 
Sbjct: 61  HLSDNSQIPHHLNSQPHIRGWKIFYIQRHHEMRIRVLKFVEHYS-CVSLEVQEYLAAIEG 120

Query: 121 LCSMQVDFMDVQMFLFKQELNVFLNLVGLHYCVNWLGVPLQHVMDALQGSDISERQVSIK 180
           LCSMQ DFMDVQ FL   +LNV LNLVGLHY +NWLGVPLQ VM+ALQGS+I++R+VSIK
Sbjct: 121 LCSMQADFMDVQTFLLNTDLNVLLNLVGLHYSINWLGVPLQRVMNALQGSNIADRKVSIK 180

Query: 181 WWKVGRWSNGFRLRDESHYRVVSLADLATKKQEDVLGVLSRGAVYEVIRVQISVASPLSV 240
           WWKVGRWSNGFRLRDESH+RVVSLAD AT K+E V GVLSRGAVYEVIRVQISVA PLSV
Sbjct: 181 WWKVGRWSNGFRLRDESHHRVVSLADFATNKEEHVRGVLSRGAVYEVIRVQISVAYPLSV 240

Query: 241 PWTCHTSLLPQR 253
           PWTC +S+ P R
Sbjct: 241 PWTCQSSVSPGR 251

[Close]

BLAST of Spo18517.1 vs. NCBI nr
Match: gi|1000971359|ref|XP_015573297.1| (PREDICTED: uncharacterized protein LOC8262390 [Ricinus communis])

HSP 1 Score: 262.7 bits (670), Expect = 6.600e-67
Identity = 130/250 (52.00%), Postives = 174/250 (69.60%), Query Frame = 1


		  
Query: 1   MKQLSCALIFDPPSDIAFRVAALLPVRDVCALGSCSKFWRELCGTDQLWISMIKQRWPSL 60
           MKQ    L    P DIA ++A+ L V DVC+LGSCS+FWRELCG+D +W S+ ++RWPSL
Sbjct: 1   MKQTEGNLQSSLPLDIALKIASSLEVLDVCSLGSCSRFWRELCGSDCIWESLTRERWPSL 60

Query: 61  RLSDHPFNSDDSISQPHFRDLKGFYVKRHNEVGSR---VVKFVEQWSFSVSVEVQGYLKA 120
              ++P +          +D +  Y++ H E+  +   V+ FVE  S S S+EV  Y KA
Sbjct: 61  SFLNNPIS----------KDWREIYIRTHKEMEGKATSVIVFVEHCSLSESLEVGEYYKA 120

Query: 121 MKELCSMQVDFMDVQMFLFKQELNVFLNLVGLHYCVNWLGVPLQHVMDALQGSDISERQV 180
           +++L SMQ+ F D+QMFLFK +L+V LNLVGLHYC+  L VP +H+MDA+    ISER V
Sbjct: 121 IEDLDSMQISFRDIQMFLFKPKLSVLLNLVGLHYCIFCLKVPAEHLMDAILFCKISERLV 180

Query: 181 SIKWWKVGRWSNGFRLRDESHYRVVSLADLATKKQEDVLGVLSRGAVYEVIRVQISVASP 240
            +KWWK+GRW  GFR+RDESH R VSLADL T K E+VLGVL RGA++EV+RV+I ++S 
Sbjct: 181 CVKWWKLGRWLYGFRMRDESHSRKVSLADLVTDKGEEVLGVLRRGAIHEVLRVKICISSE 240

Query: 241 LSVPWTCHTS 248
           +S PW C +S
Sbjct: 241 ISTPWPCQSS 240

[Close]

BLAST of Spo18517.1 vs. NCBI nr
Match: gi|976903492|gb|KVH91374.1| (F-box domain, cyclin-like protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 260.8 bits (665), Expect = 2.500e-66
Identity = 127/246 (51.63%), Postives = 169/246 (68.70%), Query Frame = 1


		  
Query: 13  PSDIAFRVAALLPVRDVCALGSCSKFWRELCGTDQLWISMIKQRWPSLRLSDH-----PF 72
           PSDIAF++A+LL   D+CALGSCS+FWRELCG+D +W  + + RWP+L L        P 
Sbjct: 11  PSDIAFKIASLLQELDLCALGSCSRFWRELCGSDHIWAGLCRDRWPALGLDKEESLTVPK 70

Query: 73  NSDDSISQPHF----RDLKGFYVKRHNEVGSR---VVKFVEQWSFSVSVEVQGYLKAMKE 132
            +   + Q H     +  +GFYV +H E+ S+   V+ F+EQ   S S+EV  YL AM+ 
Sbjct: 71  FNAHQLQQQHLDSTLKGWRGFYVSKHYEMASKADAVIHFLEQCISSESIEVNHYLVAMQN 130

Query: 133 LCSMQVDFMDVQMFLFKQELNVFLNLVGLHYCVNWLGVPLQHVMDALQGSDISERQVSIK 192
           + SMQ  F DV +F FK+ L+V LNL GLHYC+ WLGVP +HV++A+    IS+RQ+ ++
Sbjct: 131 MSSMQFGFKDVVVFFFKENLHVLLNLAGLHYCIAWLGVPAEHVIEAVSRCKISDRQICVQ 190

Query: 193 WWKVGRWSNGFRLRDESHYRVVSLADLATKKQEDVLGVLSRGAVYEVIRVQISVASPLSV 247
           WWK+GRW  GFRLRDES  R  SL DLA  K+++VL VL RGA++EVIRVQIS A P+S 
Sbjct: 191 WWKLGRWLYGFRLRDESISRRASLRDLAMAKEQEVLDVLHRGAIHEVIRVQISAAKPVSS 250

[Close]

BLAST of Spo18517.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZ88_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_012160 PE=4 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 1.200e-144
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1


		  
Query: 1   MKQLSCALIFDPPSDIAFRVAALLPVRDVCALGSCSKFWRELCGTDQLWISMIKQRWPSL 60
           MKQLSCALIFDPPSDIAFRVAALLPVRDVCALGSCSKFWRELCGTDQLWISMIKQRWPSL
Sbjct: 1   MKQLSCALIFDPPSDIAFRVAALLPVRDVCALGSCSKFWRELCGTDQLWISMIKQRWPSL 60

Query: 61  RLSDHPFNSDDSISQPHFRDLKGFYVKRHNEVGSRVVKFVEQWSFSVSVEVQGYLKAMKE 120
           RLSDHPFNSDDSISQPHFRDLKGFYVKRHNEVGSRVVKFVEQWSFSVSVEVQGYLKAMKE
Sbjct: 61  RLSDHPFNSDDSISQPHFRDLKGFYVKRHNEVGSRVVKFVEQWSFSVSVEVQGYLKAMKE 120

Query: 121 LCSMQVDFMDVQMFLFKQELNVFLNLVGLHYCVNWLGVPLQHVMDALQGSDISERQVSIK 180
           LCSMQVDFMDVQMFLFKQELNVFLNLVGLHYCVNWLGVPLQHVMDALQGSDISERQVSIK
Sbjct: 121 LCSMQVDFMDVQMFLFKQELNVFLNLVGLHYCVNWLGVPLQHVMDALQGSDISERQVSIK 180

Query: 181 WWKVGRWSNGFRLRDESHYRVVSLADLATKKQEDVLGVLSRGAVYEVIRVQISVASPLSV 240
           WWKVGRWSNGFRLRDESHYRVVSLADLATKKQEDVLGVLSRGAVYEVIRVQISVASPLSV
Sbjct: 181 WWKVGRWSNGFRLRDESHYRVVSLADLATKKQEDVLGVLSRGAVYEVIRVQISVASPLSV 240

Query: 241 PWTCHTSLLPQR 253
           PWTCHTSLLPQR
Sbjct: 241 PWTCHTSLLPQR 252

[Close]

BLAST of Spo18517.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B8K7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_001820 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 3.100e-95
Identity = 176/252 (69.84%), Postives = 203/252 (80.56%), Query Frame = 1


		  
Query: 1   MKQLSCALIFDPPSDIAFRVAALLPVRDVCALGSCSKFWRELCGTDQLWISMIKQRWPSL 60
           MK  SCA  FD P DIAF++A+ L VRDVCALGSCSKFWRELCG+D +W  + KQRWPSL
Sbjct: 1   MKHSSCAHTFDLPYDIAFKIASFLLVRDVCALGSCSKFWRELCGSDHIWAPLTKQRWPSL 60

Query: 61  RLSDHPFNSDDSISQPHFRDLKGFYVKRHNEVGSRVVKFVEQWSFSVSVEVQGYLKAMKE 120
            LSD+        SQPH R  K FY++RH+E+  RV+KFVE +S  VS+EVQ YL A++ 
Sbjct: 61  HLSDNSQIPHHLNSQPHIRGWKIFYIQRHHEMRIRVLKFVEHYS-CVSLEVQEYLAAIEG 120

Query: 121 LCSMQVDFMDVQMFLFKQELNVFLNLVGLHYCVNWLGVPLQHVMDALQGSDISERQVSIK 180
           LCSMQ DFMDVQ FL   +LNV LNLVGLHY +NWLGVPLQ VM+ALQGS+I++R+VSIK
Sbjct: 121 LCSMQADFMDVQTFLLNTDLNVLLNLVGLHYSINWLGVPLQRVMNALQGSNIADRKVSIK 180

Query: 181 WWKVGRWSNGFRLRDESHYRVVSLADLATKKQEDVLGVLSRGAVYEVIRVQISVASPLSV 240
           WWKVGRWSNGFRLRDESH+RVVSLAD AT K+E V GVLSRGAVYEVIRVQISVA PLSV
Sbjct: 181 WWKVGRWSNGFRLRDESHHRVVSLADFATNKEEHVRGVLSRGAVYEVIRVQISVAYPLSV 240

Query: 241 PWTCHTSLLPQR 253
           PWTC +S+ P R
Sbjct: 241 PWTCQSSVSPGR 251

[Close]

BLAST of Spo18517.1 vs. UniProtKB/TrEMBL
Match: A0A118JUE3_CYNCS (F-box domain, cyclin-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006601 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.800e-66
Identity = 127/246 (51.63%), Postives = 169/246 (68.70%), Query Frame = 1


		  
Query: 13  PSDIAFRVAALLPVRDVCALGSCSKFWRELCGTDQLWISMIKQRWPSLRLSDH-----PF 72
           PSDIAF++A+LL   D+CALGSCS+FWRELCG+D +W  + + RWP+L L        P 
Sbjct: 11  PSDIAFKIASLLQELDLCALGSCSRFWRELCGSDHIWAGLCRDRWPALGLDKEESLTVPK 70

Query: 73  NSDDSISQPHF----RDLKGFYVKRHNEVGSR---VVKFVEQWSFSVSVEVQGYLKAMKE 132
            +   + Q H     +  +GFYV +H E+ S+   V+ F+EQ   S S+EV  YL AM+ 
Sbjct: 71  FNAHQLQQQHLDSTLKGWRGFYVSKHYEMASKADAVIHFLEQCISSESIEVNHYLVAMQN 130

Query: 133 LCSMQVDFMDVQMFLFKQELNVFLNLVGLHYCVNWLGVPLQHVMDALQGSDISERQVSIK 192
           + SMQ  F DV +F FK+ L+V LNL GLHYC+ WLGVP +HV++A+    IS+RQ+ ++
Sbjct: 131 MSSMQFGFKDVVVFFFKENLHVLLNLAGLHYCIAWLGVPAEHVIEAVSRCKISDRQICVQ 190

Query: 193 WWKVGRWSNGFRLRDESHYRVVSLADLATKKQEDVLGVLSRGAVYEVIRVQISVASPLSV 247
           WWK+GRW  GFRLRDES  R  SL DLA  K+++VL VL RGA++EVIRVQIS A P+S 
Sbjct: 191 WWKLGRWLYGFRLRDESISRRASLRDLAMAKEQEVLDVLHRGAIHEVIRVQISAAKPVSS 250

[Close]

BLAST of Spo18517.1 vs. UniProtKB/TrEMBL
Match: W9SER4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008465 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.900e-65
Identity = 131/237 (55.27%), Postives = 170/237 (71.73%), Query Frame = 1


		  
Query: 13  PSDIAFRVAALLPVRDVCALGSCSKFWRELCGTDQLWISMIKQRWP-SLRLSDHPFNSDD 72
           P DIA ++A+ L V D+CALGSCS+FWRELC +D LW S+ K+RWP    L ++P +S  
Sbjct: 12  PDDIAVKIASSLQVSDLCALGSCSRFWRELCKSDCLWESLAKERWPFQALLEENPSSSSS 71

Query: 73  S---ISQPHFRDLKGFYVKRHNEVGSRVVK---FVEQWSFSVSVEVQGYLKAMKELCSMQ 132
           S      P F+  + FY++RHNE+ SRV++   FVEQ S   S+EV  YLKA++ L +M+
Sbjct: 72  SSIATEIPLFQGWRDFYIERHNEMASRVMEAVGFVEQSSRCESLEVGDYLKAIEVLDAMK 131

Query: 133 VDFMDVQMFLFKQELNVFLNLVGLHYCVNWLGVPLQHVMDALQGSDISERQVSIKWWKVG 192
           + F DV+M LF  +LN   NLVG+ YC++WLGVP ++V+ ALQ   IS+RQV I+WWK+G
Sbjct: 132 LGFKDVEMLLFNPKLNSLPNLVGVQYCISWLGVPAEYVLQALQYRKISDRQVCIRWWKLG 191

Query: 193 RWSNGFRLRDESHYRVVSLADLATKKQEDVLGVLSRGAVYEVIRVQISVASPLSVPW 243
           RW  GFR+RDESH   VSLADLAT K E+VLGVL RGAV+EV+RVQIS A P S  W
Sbjct: 192 RWFYGFRMRDESHSHCVSLADLATAKAEEVLGVLYRGAVHEVLRVQISTADPSSASW 248

[Close]

BLAST of Spo18517.1 vs. UniProtKB/TrEMBL
Match: A0A061EMY2_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_021137 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 5.600e-65
Identity = 128/234 (54.70%), Postives = 168/234 (71.79%), Query Frame = 1


		  
Query: 13  PSDIAFRVAALLPVRDVCALGSCSKFWRELCGTDQLWISMIKQRWPSLRLSDHPFNSDDS 72
           P+D+A ++A+ L V D+ +LG CS+ WR+LCG+D LW S++++RWP L        ++ +
Sbjct: 12  PNDVALKIASSLEVPDLSSLGCCSRVWRDLCGSDCLWKSLVRERWPLL--------NEAA 71

Query: 73  ISQPHFRDLKGFYVKRHNEVGSR---VVKFVEQWSFSVSVEVQGYLKAMKELCSMQVDFM 132
           +  P+F+  +GFY K+H EV  R   VVKFVEQ S S S+EV  YLKA++ L SMQ  F 
Sbjct: 72  LQDPNFKGWRGFYKKQHKEVAGRAASVVKFVEQCSLSESLEVSNYLKAIECLRSMQFGFK 131

Query: 133 DVQMFLFKQELNVFLNLVGLHYCVNWLGVPLQHVMDALQGSDISERQVSIKWWKVGRWSN 192
           DVQM LFK +LNV LNLVGLHYC+N L  P  HV +ALQ S IS+RQV +KWWK GR   
Sbjct: 132 DVQMVLFKPKLNVLLNLVGLHYCLNCLQEPASHVTEALQSSKISDRQVCVKWWKFGRRFY 191

Query: 193 GFRLRDESHYRVVSLADLATKKQEDVLGVLSRGAVYEVIRVQISVASPLSVPWT 244
           GFR+RDESH R +SL DLAT K+E+VLGVL RGA++EV++VQ+SVA   S  W+
Sbjct: 192 GFRMRDESHSRCISLQDLATAKEEEVLGVLERGAIHEVLQVQLSVADSTSNLWS 237

[Close]

BLAST of Spo18517.1 vs. TAIR (Arabidopsis)
Match: AT4G15563.1 (unknown protein)

HSP 1 Score: 126.3 bits (316), Expect = 2.600e-29
Identity = 70/162 (43.21%), Postives = 100/162 (61.73%), Query Frame = 1


		  
Query: 88  RHNEVGSR---VVKFVEQWSFSVSVEVQGYLKAMKELCSMQVDFMDVQMFLFKQELNVFL 147
           +H E+ SR   V+K+V +   ++S+E   YL A++ + SM+  F DV++F FK  L+V L
Sbjct: 2   QHKEMASRASEVIKYVTKSPATLSLEAGIYLHAVETMSSMRFGFQDVELFFFKPNLSVLL 61

Query: 148 NLVGLHYCVNWLGVPLQHVMDALQGSDISERQVSIKWWKVGRWSNGFRLRDESHYRVVSL 207
           NL+GL YC+  L    + V+D L+   ISE+ V +KW  +GRWS G R+RD+   R VSL
Sbjct: 62  NLIGLIYCIQHLKPRREQVVDVLRQCGISEQLVWVKWLTLGRWSGGSRMRDDIVSRQVSL 121

Query: 208 ADLATKKQEDVLGVLSRGAVYEVIRVQISVASPLSVPWTCHT 247
            D+ T K+E VL VL RG V+EV+RV IS       P +  T
Sbjct: 122 VDVVTGKEETVLRVLQRGVVHEVLRVCISTVDLACAPCSSST 163

The following BLAST results are available for this feature:

BLAST of Spo18517.1 vs. NCBI nr
BLAST of Spo18517.1 vs. UniProtKB/TrEMBL
BLAST of Spo18517.1 vs. ExPASy Swiss-Prot
BLAST of Spo18517.1 vs. TAIR (Arabidopsis)

BLAST of Spo18517.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902237501\|gb\|KNA24830.1\|	1.8e-144	100.	hypothetical protein SOVF_0121...	[more]
gi\|731372609\|ref\|XP_010666397.1\|	4.4e-95	69.8	PREDICTED: uncharacterized pro...	[more]
gi\|870842825\|gb\|KMS96147.1\|	4.4e-95	69.8	hypothetical protein BVRB_0018...	[more]
gi\|1000971359\|ref\|XP_015573297.1\|	6.6e-67	52.0	PREDICTED: uncharacterized pro...	[more]
gi\|976903492\|gb\|KVH91374.1\|	2.5e-66	51.6	F-box domain, cyclin-like prot...	[more]

BLAST of Spo18517.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RZ88_SPIOL	1.2e-144	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B8K7_BETVU	3.1e-95	69.8	Uncharacterized protein OS=Bet...	[more]
A0A118JUE3_CYNCS	1.8e-66	51.6	F-box domain, cyclin-like prot...	[more]
W9SER4_9ROSA	1.9e-65	55.2	Uncharacterized protein OS=Mor...	[more]
A0A061EMY2_THECC	5.6e-65	54.7	Uncharacterized protein isofor...	[more]

BLAST of Spo18517.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo18517.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT4G15563.1	2.6e-29	43.2	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 13..51 score: 1.
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 6..90 score: 1.74
None	No IPR available	GENE3D	1.20.1280.50		coord: 13..90 score: 1.
None	No IPR available	PANTHER	PTHR16008	FAMILY NOT NAMED	coord: 13..244 score: 3.1
None	No IPR available	PANTHER	PTHR16008:SF5	SUBFAMILY NOT NAMED	coord: 13..244 score: 3.1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0009825	multidimensional cell growth
biological_process	GO:0051013	microtubule severing
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0010091	trichome branching
biological_process	GO:0006544	glycine metabolic process
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0043622	cortical microtubule organization
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0009395	phospholipid catabolic process
biological_process	GO:0006996	organelle organization
biological_process	GO:0016998	cell wall macromolecule catabolic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0006508	proteolysis
biological_process	GO:0006396	RNA processing
biological_process	GO:0006563	L-serine metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0046653	tetrahydrofolate metabolic process
biological_process	GO:0006566	threonine metabolic process
biological_process	GO:0006629	lipid metabolic process
biological_process	GO:1903046	meiotic cell cycle process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0045298	tubulin complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005874	microtubule
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0070469	respiratory chain
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0046862	chromoplast membrane
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0000123	histone acetyltransferase complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008017	microtubule binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004620	phospholipase activity
molecular_function	GO:0008374	O-acyltransferase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0009916	alternative oxidase activity
molecular_function	GO:0047617	acyl-CoA hydrolase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0000989	transcription factor activity, transcription factor binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008115	sarcosine oxidase activity
molecular_function	GO:0008568	microtubule-severing ATPase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo13184	0.77	Barchart \| Table
Spo23716	0.76	Barchart \| Table
Spo18800	0.75	Barchart \| Table
Spo02405	0.74	Barchart \| Table
Spo02406	0.74	Barchart \| Table
Spo02486	0.74	Barchart \| Table
Spo13202	0.71	Barchart \| Table
Spo11339	0.71	Barchart \| Table
Spo06919	0.71	Barchart \| Table
Spo18997	0.71	Barchart \| Table
Spo24993	0.70	Barchart \| Table
Spo01616	0.70	Barchart \| Table
Spo24607	0.70	Barchart \| Table
Spo08169	0.69	Barchart \| Table
Spo25347	0.69	Barchart \| Table
Spo03662	0.69	Barchart \| Table
Spo13614	0.69	Barchart \| Table
Spo08572	0.68	Barchart \| Table
Spo27352	0.68	Barchart \| Table
Spo24752	0.67	Barchart \| Table
Spo15951	0.67	Barchart \| Table
Spo18994	0.67	Barchart \| Table
Spo22128	0.67	Barchart \| Table
Spo01184	0.67	Barchart \| Table
Spo24808	0.67	Barchart \| Table
Spo19751	0.66	Barchart \| Table
Spo21214	0.66	Barchart \| Table
Spo23238	0.66	Barchart \| Table
Spo23664	0.66	Barchart \| Table
Spo12322	0.66	Barchart \| Table
Spo24060	0.66	Barchart \| Table
Spo11918	0.66	Barchart \| Table
Spo02740	0.66	Barchart \| Table
Spo01858	0.66	Barchart \| Table
Spo21401	0.66	Barchart \| Table
Spo21351	0.65	Barchart \| Table
Spo18575	0.65	Barchart \| Table
Spo21784	0.65	Barchart \| Table
Spo11723	0.65	Barchart \| Table
Spo13503	0.65	Barchart \| Table
Spo13319	0.65	Barchart \| Table
Spo24796	0.65	Barchart \| Table