Spo18844 (gene) | SpinachBase

Overview


Name	Spo18844
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Nodulin-related protein 1, putative
Location	chr2 : 47866851 .. 47867300 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGAGAAATTCCCAAGAGCCACAGCGAAGCAACAACAGAAGAAACCCCAAAGATCCTTAGCGAAGCAACAACAGAAGAAACTCCTGCTAAGAGCGGCCATGCCTATGGCGAACCAACATCAACATCGGACTTGGTTGCTAGCGCTAAGACTGTAGCCGAGGCAGCACAGTTAGCTTGTTCTAACCAGAGTGACAAGATTGATAAGGCCAAGGTTTCTGAAGCTGCTGAAGATGTTCTAGAAGCCGCTAAGAAATACGGGAACCTCGATGAGAAGAGCGGTGTTGGACAGTATGTTGGTAAGGCGGAAGGTTATCTTCACAACCTTCACGCCTCCTCTGATCACCCTGTTGAGGGTGGTGAGAAGAAGCCTGAGGCTGACGAAAAGAAGGAGTCTGGTGGTGGTGCTGCAGGTTTGATGGACATGGCTAAAGGATTCTTCAAGTAA

mRNA sequence

ATGGAAGGAGAAATTCCCAAGAGCCACAGCGAAGCAACAACAGAAGAAACCCCAAAGATCCTTAGCGAAGCAACAACAGAAGAAACTCCTGCTAAGAGCGGCCATGCCTATGGCGAACCAACATCAACATCGGACTTGGTTGCTAGCGCTAAGACTGTAGCCGAGGCAGCACAGTTAGCTTGTTCTAACCAGAGTGACAAGATTGATAAGGCCAAGGTTTCTGAAGCTGCTGAAGATGTTCTAGAAGCCGCTAAGAAATACGGGAACCTCGATGAGAAGAGCGGTGTTGGACAGTATGTTGGTAAGGCGGAAGGTTATCTTCACAACCTTCACGCCTCCTCTGATCACCCTGTTGAGGGTGGTGAGAAGAAGCCTGAGGCTGACGAAAAGAAGGAGTCTGGTGGTGGTGCTGCAGGTTTGATGGACATGGCTAAAGGATTCTTCAAGTAA

Coding sequence (CDS)

ATGGAAGGAGAAATTCCCAAGAGCCACAGCGAAGCAACAACAGAAGAAACCCCAAAGATCCTTAGCGAAGCAACAACAGAAGAAACTCCTGCTAAGAGCGGCCATGCCTATGGCGAACCAACATCAACATCGGACTTGGTTGCTAGCGCTAAGACTGTAGCCGAGGCAGCACAGTTAGCTTGTTCTAACCAGAGTGACAAGATTGATAAGGCCAAGGTTTCTGAAGCTGCTGAAGATGTTCTAGAAGCCGCTAAGAAATACGGGAACCTCGATGAGAAGAGCGGTGTTGGACAGTATGTTGGTAAGGCGGAAGGTTATCTTCACAACCTTCACGCCTCCTCTGATCACCCTGTTGAGGGTGGTGAGAAGAAGCCTGAGGCTGACGAAAAGAAGGAGTCTGGTGGTGGTGCTGCAGGTTTGATGGACATGGCTAAAGGATTCTTCAAGTAA

Protein sequence

MEGEIPKSHSEATTEETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEGGEKKPEADEKKESGGGAAGLMDMAKGFFK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo18844.1	Spo18844.1	mRNA

Homology

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BLAST of Spo18844.1 vs. NCBI nr
Match: gi|902231495|gb|KNA22276.1| (hypothetical protein SOVF_035200 [Spinacia oleracea])

HSP 1 Score: 280.4 bits (716), Expect = 1.800e-72
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1

		  
Query: 1   MEGEIPKSHSEATTEETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLA 60
           MEGEIPKSHSEATTEETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLA
Sbjct: 1   MEGEIPKSHSEATTEETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLA 60

Query: 61  CSNQSDKIDKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG 120
           CSNQSDKIDKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG
Sbjct: 61  CSNQSDKIDKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG 120

Query: 121 GEKKPEADEKKESGGGAAGLMDMAKGFFK 150
           GEKKPEADEKKESGGGAAGLMDMAKGFFK
Sbjct: 121 GEKKPEADEKKESGGGAAGLMDMAKGFFK 149

[Close]

BLAST of Spo18844.1 vs. NCBI nr
Match: gi|537430792|gb|AGU69247.1| (salinity-induced protein [Salicornia brachiata])

HSP 1 Score: 142.5 bits (358), Expect = 5.900e-31
Identity = 87/128 (67.97%), Postives = 95/128 (74.22%), Query Frame = 1

		  
Query: 27  EETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVSEAAEDVLEAAKK 86
           E   AK+ H  G P STS+L+ASAKTVAEAAQ AC+ Q+DKIDKAKV+ AAEDVLEA K 
Sbjct: 2   EGEAAKTEH--GAPKSTSELMASAKTVAEAAQFACTQQTDKIDKAKVAGAAEDVLEATKS 61

Query: 87  YGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEGG----EKKPEADEKKE--SGGGAAGL 146
           YG LDE SGVGQYV KAEGYLHNLHASSD P E      EK+P A  +KE  SGGG  GL
Sbjct: 62  YGKLDENSGVGQYVTKAEGYLHNLHASSDSPSEAAGKDKEKEPSAAAEKEPSSGGGGGGL 121

Query: 147 MDMAKGFF 149
           M MAKG F
Sbjct: 122 MGMAKGLF 127

[Close]

BLAST of Spo18844.1 vs. NCBI nr
Match: gi|731339253|ref|XP_010680752.1| (PREDICTED: uncharacterized protein LOC104895828 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 139.4 bits (350), Expect = 5.000e-30
Identity = 87/140 (62.14%), Postives = 100/140 (71.43%), Query Frame = 1

		  
Query: 15  EETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVS 74
           EE PK + E    ETP KS H    PTSTSDL+ASAK VAEAAQLAC+ Q+DKIDKAKVS
Sbjct: 3   EENPKSMEE----ETP-KSEHP---PTSTSDLMASAKIVAEAAQLACTQQTDKIDKAKVS 62

Query: 75  EAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEGGEKKPEAD------ 134
           EAAE+VLEA K YG LDE +GVGQYV KA+GYLH +HASS+     G +K E+D      
Sbjct: 63  EAAEEVLEAVKTYGKLDESAGVGQYVDKAQGYLHKMHASSEDVAHSGAEKEESDAPADAA 122

Query: 135 EKKESGGGAAGLMDMAKGFF 149
           EK +  GG  GLM+MAKG F
Sbjct: 123 EKDKFSGGLGGLMNMAKGLF 134

[Close]

BLAST of Spo18844.1 vs. NCBI nr
Match: gi|870857434|gb|KMT08994.1| (hypothetical protein BVRB_6g137040 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 137.9 bits (346), Expect = 1.500e-29
Identity = 83/128 (64.84%), Postives = 95/128 (74.22%), Query Frame = 1

		  
Query: 27  EETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVSEAAEDVLEAAKK 86
           EETP KS H    PTSTSDL+ASAK VAEAAQLAC+ Q+DKIDKAKVSEAAE+VLEA K 
Sbjct: 3   EETP-KSEHP---PTSTSDLMASAKIVAEAAQLACTQQTDKIDKAKVSEAAEEVLEAVKT 62

Query: 87  YGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEGGEKKPEAD------EKKESGGGAAGL 146
           YG LDE +GVGQYV KA+GYLH +HASS+     G +K E+D      EK +  GG  GL
Sbjct: 63  YGKLDESAGVGQYVDKAQGYLHKMHASSEDVAHSGAEKEESDAPADAAEKDKFSGGLGGL 122

Query: 147 MDMAKGFF 149
           M+MAKG F
Sbjct: 123 MNMAKGLF 126

[Close]

BLAST of Spo18844.1 vs. NCBI nr
Match: gi|685350040|ref|XP_009110568.1| (PREDICTED: uncharacterized protein LOC103836092 [Brassica rapa])

HSP 1 Score: 102.4 bits (254), Expect = 6.800e-19
Identity = 65/140 (46.43%), Postives = 86/140 (61.43%), Query Frame = 1

		  
Query: 23  EATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVSEAAEDVLE 82
           E      P +   A   P S+S+L+ASAK VAEAAQ A  N+SDK+DKAKV+ A+ D+L+
Sbjct: 17  EEPDHNKPVEGTEAANRPASSSELMASAKVVAEAAQAAARNESDKLDKAKVAGASADILD 76

Query: 83  AAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG------------GEKKPEADE- 142
           AA+KYG LDEKSG GQY+ KAE YL++  +S      G             + +PEA + 
Sbjct: 77  AAQKYGKLDEKSGAGQYLDKAEKYLNDFESSHSSGAAGTPPPAAGAPPPVSQAEPEAKKA 136

Query: 143 KKESGGGAAGLMDMAKGFFK 150
           ++ESGGG  G   MA+GF K
Sbjct: 137 EEESGGGLGGYAKMAQGFMK 156

[Close]

BLAST of Spo18844.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRU6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_035200 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.300e-72
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1

		  
Query: 1   MEGEIPKSHSEATTEETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLA 60
           MEGEIPKSHSEATTEETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLA
Sbjct: 1   MEGEIPKSHSEATTEETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLA 60

Query: 61  CSNQSDKIDKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG 120
           CSNQSDKIDKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG
Sbjct: 61  CSNQSDKIDKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG 120

Query: 121 GEKKPEADEKKESGGGAAGLMDMAKGFFK 150
           GEKKPEADEKKESGGGAAGLMDMAKGFFK
Sbjct: 121 GEKKPEADEKKESGGGAAGLMDMAKGFFK 149

[Close]

BLAST of Spo18844.1 vs. UniProtKB/TrEMBL
Match: T1YW73_9CARY (Salinity-induced protein OS=Salicornia brachiata PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.100e-31
Identity = 87/128 (67.97%), Postives = 95/128 (74.22%), Query Frame = 1

		  
Query: 27  EETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVSEAAEDVLEAAKK 86
           E   AK+ H  G P STS+L+ASAKTVAEAAQ AC+ Q+DKIDKAKV+ AAEDVLEA K 
Sbjct: 2   EGEAAKTEH--GAPKSTSELMASAKTVAEAAQFACTQQTDKIDKAKVAGAAEDVLEATKS 61

Query: 87  YGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEGG----EKKPEADEKKE--SGGGAAGL 146
           YG LDE SGVGQYV KAEGYLHNLHASSD P E      EK+P A  +KE  SGGG  GL
Sbjct: 62  YGKLDENSGVGQYVTKAEGYLHNLHASSDSPSEAAGKDKEKEPSAAAEKEPSSGGGGGGL 121

Query: 147 MDMAKGFF 149
           M MAKG F
Sbjct: 122 MGMAKGLF 127

[Close]

BLAST of Spo18844.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C9S4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g137040 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.000e-29
Identity = 83/128 (64.84%), Postives = 95/128 (74.22%), Query Frame = 1

		  
Query: 27  EETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVSEAAEDVLEAAKK 86
           EETP KS H    PTSTSDL+ASAK VAEAAQLAC+ Q+DKIDKAKVSEAAE+VLEA K 
Sbjct: 3   EETP-KSEHP---PTSTSDLMASAKIVAEAAQLACTQQTDKIDKAKVSEAAEEVLEAVKT 62

Query: 87  YGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEGGEKKPEAD------EKKESGGGAAGL 146
           YG LDE +GVGQYV KA+GYLH +HASS+     G +K E+D      EK +  GG  GL
Sbjct: 63  YGKLDESAGVGQYVDKAQGYLHKMHASSEDVAHSGAEKEESDAPADAAEKDKFSGGLGGL 122

Query: 147 MDMAKGFF 149
           M+MAKG F
Sbjct: 123 MNMAKGLF 126

[Close]

BLAST of Spo18844.1 vs. UniProtKB/TrEMBL
Match: M4DJP1_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.700e-19
Identity = 65/140 (46.43%), Postives = 86/140 (61.43%), Query Frame = 1

		  
Query: 23  EATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVSEAAEDVLE 82
           E      P +   A   P S+S+L+ASAK VAEAAQ A  N+SDK+DKAKV+ A+ D+L+
Sbjct: 17  EEPDHNKPVEGTEAANRPASSSELMASAKVVAEAAQAAARNESDKLDKAKVAGASADILD 76

Query: 83  AAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG------------GEKKPEADE- 142
           AA+KYG LDEKSG GQY+ KAE YL++  +S      G             + +PEA + 
Sbjct: 77  AAQKYGKLDEKSGAGQYLDKAEKYLNDFESSHSSGAAGTPPPAAGAPPPVSQAEPEAKKA 136

Query: 143 KKESGGGAAGLMDMAKGFFK 150
           ++ESGGG  G   MA+GF K
Sbjct: 137 EEESGGGLGGYAKMAQGFMK 156

[Close]

BLAST of Spo18844.1 vs. UniProtKB/TrEMBL
Match: C6TMA8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G226600 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.400e-18
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 1

		  
Query: 42  STSDLVASAKTVAEAAQLACSNQSDKIDKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVG 101
           ST++L+ SAK VAEAAQ A  + SDK+DKAKV++AA D+L+AA KYG LD+K G+GQYV 
Sbjct: 15  STTELITSAKLVAEAAQSALKSDSDKVDKAKVADAAGDLLDAAGKYGKLDDKQGIGQYVD 74

Query: 102 KAEGYLHNLHA-SSDHPVEGGEKKPEADEKKESGGGAAGLMDMAKGFFK 150
           KA  YLHN    ++  P +  E K E     ESGGG  GL ++A GFFK
Sbjct: 75  KAADYLHNYQGDNTTAPSQPAESKGE-----ESGGGLGGLANLAGGFFK 118

[Close]

BLAST of Spo18844.1 vs. TAIR (Arabidopsis)
Match: AT2G03440.1 (nodulin-related protein 1)

HSP 1 Score: 94.7 bits (234), Expect = 5.000e-20
Identity = 67/157 (42.68%), Postives = 87/157 (55.41%), Query Frame = 1

		  
Query: 9   HSEATTEETPKILSEATTEETPAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKI 68
           H+E TT +      E TT +  + +      P + ++L+ASAK VAEAAQ A  ++SDK+
Sbjct: 33  HTEPTTHKPGH--GEPTTHKPVSNTDPTTHRPATNAELMASAKIVAEAAQAAARHESDKL 92

Query: 69  DKAKVSEAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEGGEKK---- 128
           DKAKV+ A  D+L+AA +YG LDEKSGVGQY+ KAE YLH    S  H   GG       
Sbjct: 93  DKAKVAGATADILDAASRYGKLDEKSGVGQYLEKAEQYLHKYETSHSHSSTGGTGSHGNV 152

Query: 129 ---------PEADEKKESGGGAAGLMD---MAKGFFK 150
                    P A ++ E  GG  G  D   MA+GF K
Sbjct: 153 GGHGGGAGAPAAKKEDEKSGGGHGFGDYAKMAQGFMK 187

[Close]

BLAST of Spo18844.1 vs. TAIR (Arabidopsis)
Match: AT1G13930.1 (Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress.)

HSP 1 Score: 93.2 bits (230), Expect = 1.500e-19
Identity = 65/147 (44.22%), Postives = 84/147 (57.14%), Query Frame = 1

		  
Query: 19  KILSEATTEET----PAKSGHAYGEPTSTSDLVASAKTVAEAAQLACSNQSDKIDKAKVS 78
           K LS +T EE     P +       P + ++L+ASAK VAEAAQ A  N+SDK+DK KV+
Sbjct: 9   KKLSSSTPEEPDHNKPVEGTETATRPATNAELMASAKVVAEAAQAAARNESDKLDKGKVA 68

Query: 79  EAAEDVLEAAKKYGNLDEKSGVGQYVGKAEGYLHNLHASSDHPVEG---------GEKKP 138
            A+ D+L+AA+KYG  DEKS  GQY+ KAE YL++  +S      G            +P
Sbjct: 69  GASADILDAAEKYGKFDEKSSTGQYLDKAEKYLNDYESSHSTGAGGPPPPTSQAEPASQP 128

Query: 139 EADEKK---ESGGGAAGLMDMAKGFFK 150
           E   KK   ESGGG  G   MA+GF K
Sbjct: 129 EPAAKKDDEESGGGLGGYAKMAQGFLK 155

The following BLAST results are available for this feature:

BLAST of Spo18844.1 vs. NCBI nr
BLAST of Spo18844.1 vs. UniProtKB/TrEMBL
BLAST of Spo18844.1 vs. ExPASy Swiss-Prot
BLAST of Spo18844.1 vs. TAIR (Arabidopsis)

BLAST of Spo18844.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902231495\|gb\|KNA22276.1\|	1.8e-72	100.	hypothetical protein SOVF_0352...	[more]
gi\|537430792\|gb\|AGU69247.1\|	5.9e-31	67.9	salinity-induced protein [Sali...	[more]
gi\|731339253\|ref\|XP_010680752.1\|	5.0e-30	62.1	PREDICTED: uncharacterized pro...	[more]
gi\|870857434\|gb\|KMT08994.1\|	1.5e-29	64.8	hypothetical protein BVRB_6g13...	[more]
gi\|685350040\|ref\|XP_009110568.1\|	6.8e-19	46.4	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo18844.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RRU6_SPIOL	1.3e-72	100.	Uncharacterized protein OS=Spi...	[more]
T1YW73_9CARY	4.1e-31	67.9	Salinity-induced protein OS=Sa...	[more]
A0A0J8C9S4_BETVU	1.0e-29	64.8	Uncharacterized protein OS=Bet...	[more]
M4DJP1_BRARP	4.7e-19	46.4	Uncharacterized protein OS=Bra...	[more]
C6TMA8_SOYBN	1.4e-18	55.0	Uncharacterized protein OS=Gly...	[more]

BLAST of Spo18844.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo18844.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT2G03440.1	5.0e-20	42.6	nodulin-related protein 1	[more]
AT1G13930.1	1.5e-19	44.2	Involved in response to salt s...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35098	FAMILY NOT NAMED	coord: 11..129 score: 7.7
None	No IPR available	PANTHER	PTHR35098:SF1	SUBFAMILY NOT NAMED	coord: 11..129 score: 7.7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006096	glycolytic process
biological_process	GO:0050992	dimethylallyl diphosphate biosynthetic process
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0070647	protein modification by small protein conjugation or removal
biological_process	GO:0033043	regulation of organelle organization
biological_process	GO:0022414	reproductive process
biological_process	GO:0006457	protein folding
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006310	DNA recombination
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0042793	plastid transcription
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0007127	meiosis I
biological_process	GO:0003006	developmental process involved in reproduction
biological_process	GO:0007015	actin filament organization
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006597	spermine biosynthetic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0015996	chlorophyll catabolic process
biological_process	GO:0042548	regulation of photosynthesis, light reaction
biological_process	GO:0006629	lipid metabolic process
biological_process	GO:0009809	lignin biosynthetic process
biological_process	GO:0009811	stilbene biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0007059	chromosome segregation
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006090	pyruvate metabolic process
biological_process	GO:0009653	anatomical structure morphogenesis
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0051276	chromosome organization
biological_process	GO:0010048	vernalization response
biological_process	GO:0009932	cell tip growth
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0043647	inositol phosphate metabolic process
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0006417	regulation of translation
biological_process	GO:0009617	response to bacterium
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0046856	phosphatidylinositol dephosphorylation
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0031408	oxylipin biosynthetic process
biological_process	GO:0019216	regulation of lipid metabolic process
biological_process	GO:1901401	regulation of tetrapyrrole metabolic process
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0009911	positive regulation of flower development
biological_process	GO:0009410	response to xenobiotic stimulus
biological_process	GO:0010310	regulation of hydrogen peroxide metabolic process
biological_process	GO:0048481	plant ovule development
biological_process	GO:0043547	positive regulation of GTPase activity
biological_process	GO:0052543	callose deposition in cell wall
biological_process	GO:0010053	root epidermal cell differentiation
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0046685	response to arsenic-containing substance
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0010582	floral meristem determinacy
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0010076	maintenance of floral meristem identity
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0009556	microsporogenesis
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0009910	negative regulation of flower development
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0008295	spermidine biosynthetic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0006525	arginine metabolic process
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0010260	animal organ senescence
biological_process	GO:0042908	xenobiotic transport
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009805	coumarin biosynthetic process
biological_process	GO:0009637	response to blue light
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0007165	signal transduction
biological_process	GO:0009611	response to wounding
biological_process	GO:0071805	potassium ion transmembrane transport
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0006810	transport
biological_process	GO:0030001	metal ion transport
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0010227	floral organ abscission
biological_process	GO:0032880	regulation of protein localization
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009817	defense response to fungus, incompatible interaction
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009954	proximal/distal pattern formation
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0009638	phototropism
biological_process	GO:0034976	response to endoplasmic reticulum stress
biological_process	GO:0048439	flower morphogenesis
biological_process	GO:0009408	response to heat
biological_process	GO:0009723	response to ethylene
biological_process	GO:0009627	systemic acquired resistance
biological_process	GO:0010304	PSII associated light-harvesting complex II catabolic process
biological_process	GO:0006508	proteolysis
biological_process	GO:0051301	cell division
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006855	drug transmembrane transport
cellular_component	GO:0005773	vacuole
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0008076	voltage-gated potassium channel complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0048529	magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity
molecular_function	GO:0046914	transition metal ion binding
molecular_function	GO:0008886	glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008559	xenobiotic transmembrane transporting ATPase activity
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000900	translation repressor activity, mRNA regulatory element binding
molecular_function	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0050275	scopoletin glucosyltransferase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0051119	sugar transmembrane transporter activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0004185	serine-type carboxypeptidase activity
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0004650	polygalacturonase activity
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0005249	voltage-gated potassium channel activity
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0004176	ATP-dependent peptidase activity
molecular_function	GO:0004014	adenosylmethionine decarboxylase activity
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008568	microtubule-severing ATPase activity
molecular_function	GO:0004462	lactoylglutathione lyase activity
molecular_function	GO:0080019	fatty-acyl-CoA reductase (alcohol-forming) activity
molecular_function	GO:0004871	obsolete signal transducer activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0030145	manganese ion binding
molecular_function	GO:0005094	Rho GDP-dissociation inhibitor activity
molecular_function	GO:0005096	GTPase activator activity
molecular_function	GO:0010181	FMN binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0008081	phosphoric diester hydrolase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005215	transporter activity
molecular_function	GO:0051745	4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0043565	sequence-specific DNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo23854	0.84	Barchart \| Table
Spo01135	0.83	Barchart \| Table
Spo07633	0.82	Barchart \| Table
Spo12005	0.80	Barchart \| Table
Spo10086	0.79	Barchart \| Table
Spo28146	0.78	Barchart \| Table
Spo21361	0.77	Barchart \| Table
Spo27324	0.77	Barchart \| Table
Spo19431	0.76	Barchart \| Table
Spo11630	0.76	Barchart \| Table
Spo24145	0.76	Barchart \| Table
Spo02649	0.76	Barchart \| Table
Spo26135	0.75	Barchart \| Table
Spo09232	0.75	Barchart \| Table
Spo22921	0.75	Barchart \| Table
Spo00314	0.75	Barchart \| Table
Spo04123	0.75	Barchart \| Table
Spo05013	0.75	Barchart \| Table
Spo17345	0.75	Barchart \| Table
Spo26790	0.75	Barchart \| Table
Spo23800	0.74	Barchart \| Table
Spo09638	0.74	Barchart \| Table
Spo20648	0.74	Barchart \| Table
Spo03638	0.74	Barchart \| Table
Spo18702	0.74	Barchart \| Table
Spo24847	0.74	Barchart \| Table
Spo11635	0.74	Barchart \| Table
Spo15704	0.74	Barchart \| Table
Spo21484	0.73	Barchart \| Table
Spo12666	0.73	Barchart \| Table
Spo15406	0.73	Barchart \| Table
Spo28267	0.73	Barchart \| Table
Spo26688	0.73	Barchart \| Table
Spo09378	0.72	Barchart \| Table
Spo17450	0.72	Barchart \| Table
Spo26818	0.72	Barchart \| Table
Spo05496	0.72	Barchart \| Table
Spo08591	0.72	Barchart \| Table
Spo01589	0.72	Barchart \| Table
Spo25953	0.72	Barchart \| Table
Spo12491	0.72	Barchart \| Table
Spo23299	0.72	Barchart \| Table
Spo14473	0.72	Barchart \| Table
Spo23232	0.72	Barchart \| Table
Spo14830	0.71	Barchart \| Table
Spo07234	0.71	Barchart \| Table
Spo15995	0.71	Barchart \| Table
Spo23626	0.71	Barchart \| Table
Spo25648	0.71	Barchart \| Table
Spo30001	0.71	Barchart \| Table
Spo23853	0.71	Barchart \| Table
Spo07237	0.71	Barchart \| Table
Spo19442	0.71	Barchart \| Table
Spo01592	0.71	Barchart \| Table
Spo00895	0.71	Barchart \| Table
Spo08048	0.71	Barchart \| Table
Spo08407	0.71	Barchart \| Table
Spo04954	0.71	Barchart \| Table
Spo04615	0.71	Barchart \| Table
Spo23035	0.71	Barchart \| Table
Spo09412	0.70	Barchart \| Table
Spo07603	0.70	Barchart \| Table
Spo26739	0.70	Barchart \| Table
Spo24779	0.70	Barchart \| Table
Spo05508	0.70	Barchart \| Table
Spo04300	0.70	Barchart \| Table
Spo24133	0.70	Barchart \| Table
Spo02554	0.70	Barchart \| Table
Spo13530	0.70	Barchart \| Table
Spo23044	0.70	Barchart \| Table
Spo08166	0.70	Barchart \| Table
Spo26503	0.70	Barchart \| Table
Spo16801	0.70	Barchart \| Table
Spo04101	0.69	Barchart \| Table
Spo16930	0.69	Barchart \| Table
Spo17860	0.69	Barchart \| Table
Spo18589	0.69	Barchart \| Table
Spo25689	0.69	Barchart \| Table
Spo19708	0.69	Barchart \| Table
Spo20148	0.69	Barchart \| Table
Spo15447	0.69	Barchart \| Table
Spo09904	0.69	Barchart \| Table
Spo20524	0.69	Barchart \| Table
Spo00256	0.69	Barchart \| Table
Spo20788	0.69	Barchart \| Table
Spo14270	0.69	Barchart \| Table
Spo15890	0.69	Barchart \| Table
Spo19393	0.68	Barchart \| Table
Spo00877	0.68	Barchart \| Table
Spo02979	0.68	Barchart \| Table
Spo03650	0.68	Barchart \| Table
Spo03809	0.68	Barchart \| Table
Spo05657	0.68	Barchart \| Table
Spo07702	0.68	Barchart \| Table
Spo08933	0.68	Barchart \| Table
Spo10974	0.68	Barchart \| Table
Spo11398	0.68	Barchart \| Table
Spo11573	0.68	Barchart \| Table
Spo12688	0.68	Barchart \| Table
Spo15079	0.68	Barchart \| Table
Spo16188	0.68	Barchart \| Table
Spo19444	0.68	Barchart \| Table
Spo21581	0.68	Barchart \| Table
Spo21956	0.68	Barchart \| Table
Spo22472	0.68	Barchart \| Table
Spo23124	0.68	Barchart \| Table
Spo23257	0.68	Barchart \| Table
Spo23415	0.68	Barchart \| Table
Spo23711	0.68	Barchart \| Table
Spo25803	0.68	Barchart \| Table
Spo27250	0.68	Barchart \| Table
Spo15990	0.67	Barchart \| Table
Spo14016	0.67	Barchart \| Table
Spo02443	0.67	Barchart \| Table
Spo21396	0.67	Barchart \| Table
Spo18618	0.67	Barchart \| Table
Spo12853	0.67	Barchart \| Table
Spo11480	0.67	Barchart \| Table
Spo24140	0.67	Barchart \| Table
Spo06252	0.67	Barchart \| Table
Spo17000	0.67	Barchart \| Table
Spo20895	0.67	Barchart \| Table
Spo22272	0.67	Barchart \| Table
Spo01628	0.67	Barchart \| Table
Spo15308	0.67	Barchart \| Table
Spo10031	0.67	Barchart \| Table
Spo14948	0.67	Barchart \| Table
Spo25170	0.67	Barchart \| Table
Spo20248	0.67	Barchart \| Table
Spo14911	0.67	Barchart \| Table
Spo10571	0.67	Barchart \| Table
Spo14264	0.67	Barchart \| Table
Spo20651	0.66	Barchart \| Table
Spo20837	0.66	Barchart \| Table
Spo21748	0.66	Barchart \| Table
Spo05915	0.66	Barchart \| Table
Spo23125	0.66	Barchart \| Table
Spo02833	0.66	Barchart \| Table
Spo13550	0.66	Barchart \| Table
Spo13317	0.66	Barchart \| Table
Spo11860	0.66	Barchart \| Table
Spo25262	0.66	Barchart \| Table
Spo10238	0.66	Barchart \| Table
Spo09858	0.66	Barchart \| Table
Spo08811	0.66	Barchart \| Table
Spo00135	0.66	Barchart \| Table
Spo19069	0.66	Barchart \| Table
Spo18450	0.66	Barchart \| Table
Spo20268	0.66	Barchart \| Table
Spo17986	0.66	Barchart \| Table
Spo17947	0.66	Barchart \| Table
Spo07829	0.65	Barchart \| Table
Spo12294	0.65	Barchart \| Table
Spo00803	0.65	Barchart \| Table
Spo27136	0.65	Barchart \| Table
Spo21274	0.65	Barchart \| Table
Spo18046	0.65	Barchart \| Table
Spo15222	0.65	Barchart \| Table
Spo03335	0.65	Barchart \| Table
Spo15317	0.65	Barchart \| Table
Spo25987	0.65	Barchart \| Table
Spo09607	0.65	Barchart \| Table