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Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATTAACGGTTAAACGGGTCGGTTACGGTTACAATTTTTGACAGAACGCTTAACCGAATAAACCGAAAATAGAAGATCAAGTCAAACAAAAATAAGTCTTACCAACGTCTAAAATTACACAAGTTCATCAAGTTCAAACAAAATTATGAAGTAACATACTTATTGTTTCAAGAAAGGACTAATGGGCTAAGAGCCTAAGAAGTAAGTACACTAACAAACATTTTTTACTCAATTCAAATGTCTTAAACTCCGCATCGGTCAAACCGGTGCGAGTATTAAGGGACGGAGGGAGTATACTTTTAGATCAAACAGTTATACTTATAATAAAGCTATCTTTACGCGTATGAGTGTATGACAGTCTACTGGCTAGATATTCTTGTACCTGTACACTTTCTATAGTCACTCTCAAATTATATAAACGTAGCACTAATGTAACAAATTATTGTTACATTATTTAACCATAATTAGTTTCTAAAATGGGTAAATTAATATTATTGGATCAGGAATTGGAATACTATCAGTACCGTATGCCTTAGCAGCAGGAGGATGGATGAGTCTAATCCTATTCTTCATCATAGCCTTAGCAGCAACATACTCAGGCCTACTAGTAAAACGATGCATGCAGGCCGATTCAAAAATCAAAACATACTCCGATATAGGCGAACACGCGTTCGGACGCATCGGAAAAGTCGTGGTATCCGCAGTATTGTACGCAGATCTGTACATGGTCGTAACCGGGTTCTTAATCTTAGAAGGCGATAATCTACACAACTTGTTCCCACAAATGAGTGTTGAATTACTCGGGTTGACGATCAATGGTAACTCGAGCTTCATTGTTATGGTTGCCCTGATTTTGTTGCCTACGGTTTGGTTAGATGATCTTAGTATTCTTGCGTATGTCTCGGCTGGTGGCGTGGTCGCATCGTTTGTTATACTATTATCGGTCGTATGGGTTGGTGCATTTGATGGAGTTGGGTTCCAACATAAAGGGGAATTGTTTAACTTGAAAGGGTTACCTACGGCTGTTAGTTTGTTTATGTTTTGTTACAGTGCTCACCCTGTTTTCCCTCCACTATACACTTCCATTCAAAAGAAACATCAGTTTTCTACGGTACGTAAACCTCCAACCCGATCTATGTTTTTGTCTATGATTTTATATTACTTAATGTAGTTTCGTATGCACCAATGATGTCTTAATCTAGTGATAGACCGAATGTCTGTGTATGGTAGTTTATAGGTTCGAGTCGCCACTAATAATATTTGTTGTAGTGTTAAAAAAGCTTATATTGATGCATGTTTAAGGCGAAATGAAAAGTTCGAGTGACAAAGAGTAAAATTTGTCGATGATATCAAAATTTTTACTTTCTTATATCGCCGAAAAACACACTAGAATTATAGATATTATCACAATCTAGACCTGATCAATAGGCGGGATGTGTTTAGGACGGGCCACGGTCAAAATTACATTCTGCCCTATTGTGTTGGACTAGGCTAGGCCAGACATCAGGTCAAATTTTATGTCAAAGCCCACTATTTTAGACCAAAAATAGCGGATTTTTCATGGCGGACCAATTTTATAACTAAAATTTCAATTTTGCGTTGCCCAAATCCACCCAAAAAAAATTAAAACCGGGCAGCGTATCAGGCTGAACCAATAAAAACGGGCCTGAAAATATGCCTAAACCCCACTATTTTCAGGCTAGGTCAGCGGGCCGGCTCAAGATGGTCGGGGTCTATGACAATCTATATTTCAATTTTATAAACTTTATAATGGTTAACTTGCTAAGTTAATGACATTGCTCCGTTTGTATATGGGCAGGTCTTACTCCTATGTTTCACAGTATGCACACTGAGTTACGCAGCAATGGCAATCTTAGGGTACGCAATGTTCGGTCCAGGAGTAAACTCGCAAATCACATTAAACCTTCCGACGTCAAAGCTAGCCTCGCAAGTAGCAATCTACACCACATTGGTGACTCCATTAGCAAAATACGCACTCATGTTAAAGCCCGTGGCAATTACAACCGAGAGTTGGTTTCCTACATACCAGAAGAACAAGTCCTTCAGAATCTTCATCAGAACATTCTTGGTTGCTACACAAGTTATCGTTGCGTTGTGTATTCCGTTCTTCGGGTATCTCATGTCACTTGTTGGAGCATTGTTAAGTGCAACTGCATCTCTTACCATCCCTTGTGTTTGTTACATGAAGATTTCTCGAACTAAATGGGGTAGTGTTGAGATGGTTGCTATCCTAAGTGTTATAGTCTTGAGTATTCTTATTGTTGTTTTTGGTACCTACACTTCTTTGGTCCAAATCATTGGGGAAATCACCACTTCTTGAGGTTAATTTGGGTTTGAATAATTAATTAATGCGTAGATTTTATGATTCATTTGATTTTTTGATCAATTTTGTACGAGTGTTGAATGGTATAGATCGGTCAGTTTATTTACCGAGAAGATCTAAACTTGTAATTTTTCCGTGTTGGAATTCATCTTCCAATACTTTATGGATAAAATTACTACTATGTAGTTCCAGAAAGATTTAAACTTGTAATTTACCAATTAATTCACATATTGTAAGGGATCTCAAAATCTCAAATTAGCTAGAAGTGAGTCAAGTGGCCCAAATTAACGGTTAAACGGGTCGGTTACGGTTACAATTTTTGACAGAACGCTTAACCGAATAAACCGAAAATAGAAGATCAAGTCAAACAAAAATAAGTCTTACCAACGTCTAAAATTACACAAGTTCATCAAGTTCAAACAAAATTATGAAGTAACATACTTATTGTTTCAAGAAAGGACTAATGGGCTAAGAGCCTAAGAAGTAAGTACACTAACAAACATTTTTTACTCAATTCAAATGTCTTAAACTCCGCATCGGTCAAACCGGTGCGAGTATTAAGGGACGGAGGGAGTATACTTTTAGATCAAACAGTTATACTTATAATAAAGCTATCTTTACGCGTATGAGTGTATGACAGTCTACTGGCTAGATATTCTTGTACCTGTACACTTTCTATAGTCACTCTCAAATTATATAAACGTAGCACTAATGTAACAAATTATTGTTACATTATTTAACCATAATTAGTTTCTAAAATGGGTAAATTAATATTATTGGATCAGGAATTGGAATACTATCAGTACCGTATGCCTTAGCAGCAGGAGGATGGATGAGTCTAATCCTATTCTTCATCATAGCCTTAGCAGCAACATACTCAGGCCTACTAGTAAAACGATGCATGCAGGCCGATTCAAAAATCAAAACATACTCCGATATAGGCGAACACGCGTTCGGACGCATCGGAAAAGTCGTGGTATCCGCAGTATTGTACGCAGATCTGTACATGGTCGTAACCGGGTTCTTAATCTTAGAAGGCGATAATCTACACAACTTGTTCCCACAAATGAGTGTTGAATTACTCGGGTTGACGATCAATGGTAACTCGAGCTTCATTGTTATGGTTGCCCTGATTTTGTTGCCTACGGTTTGGTTAGATGATCTTAGTATTCTTGCGTATGTCTCGGCTGGTGGCGTGGTCGCATCGTTTGTTATACTATTATCGGTCGTATGGGTTGGTGCATTTGATGGAGTTGGGTTCCAACATAAAGGGGAATTGTTTAACTTGAAAGGGTTACCTACGGCTGTTAGTTTGTTTATGTTTTGTTACAGTGCTCACCCTGTTTTCCCTCCACTATACACTTCCATTCAAAAGAAACATCAGTTTTCTACGGTCTTACTCCTATGTTTCACAGTATGCACACTGAGTTACGCAGCAATGGCAATCTTAGGGTACGCAATGTTCGGTCCAGGAGTAAACTCGCAAATCACATTAAACCTTCCGACGTCAAAGCTAGCCTCGCAAGTAGCAATCTACACCACATTGGTGACTCCATTAGCAAAATACGCACTCATGTTAAAGCCCGTGGCAATTACAACCGAGAGTTGGTTTCCTACATACCAGAAGAACAAGTCCTTCAGAATCTTCATCAGAACATTCTTGGTTGCTACACAAGTTATCGTTGCGTTGTGTATTCCGTTCTTCGGGTATCTCATGTCACTTGTTGGAGCATTGTTAAGTGCAACTGCATCTCTTACCATCCCTTGTGTTTGTTACATGAAGATTTCTCGAACTAAATGGGGTAGTGTTGAGATGGTTGCTATCCTAAGTGTTATAGTCTTGAGTATTCTTATTGTTGTTTTTGGTACCTACACTTCTTTGGTCCAAATCATTGGGGAAATCACCACTTCTTGAGGTTAATTTGGGTTTGAATAATTAATTAATGCGTAGATTTTATGATTCATTTGATTTTTTGATCAATTTTGTACGAGTGTTGAATGGTATAGATCGGTCAGTTTATTTACCGAGAAGATCTAAACTTGTAATTTTTCCGTGTTGGAATTCATCTTCCAATACTTTATGGATAAAATTACTACTATGTAGTTCCAGAAAGATTTAAACTTGTAATTTACCAATTAATTCACATATTGTAAGGGATCTCAAAATCTCAAATTAGCTAGAAGTGAGTCAAGTGGCCCA ATGAGTCTAATCCTATTCTTCATCATAGCCTTAGCAGCAACATACTCAGGCCTACTAGTAAAACGATGCATGCAGGCCGATTCAAAAATCAAAACATACTCCGATATAGGCGAACACGCGTTCGGACGCATCGGAAAAGTCGTGGTATCCGCAGTATTGTACGCAGATCTGTACATGGTCGTAACCGGGTTCTTAATCTTAGAAGGCGATAATCTACACAACTTGTTCCCACAAATGAGTGTTGAATTACTCGGGTTGACGATCAATGGTAACTCGAGCTTCATTGTTATGGTTGCCCTGATTTTGTTGCCTACGGTTTGGTTAGATGATCTTAGTATTCTTGCGTATGTCTCGGCTGGTGGCGTGGTCGCATCGTTTGTTATACTATTATCGGTCGTATGGGTTGGTGCATTTGATGGAGTTGGGTTCCAACATAAAGGGGAATTGTTTAACTTGAAAGGGTTACCTACGGCTGTTAGTTTGTTTATGTTTTGTTACAGTGCTCACCCTGTTTTCCCTCCACTATACACTTCCATTCAAAAGAAACATCAGTTTTCTACGGTCTTACTCCTATGTTTCACAGTATGCACACTGAGTTACGCAGCAATGGCAATCTTAGGGTACGCAATGTTCGGTCCAGGAGTAAACTCGCAAATCACATTAAACCTTCCGACGTCAAAGCTAGCCTCGCAAGTAGCAATCTACACCACATTGGTGACTCCATTAGCAAAATACGCACTCATGTTAAAGCCCGTGGCAATTACAACCGAGAGTTGGTTTCCTACATACCAGAAGAACAAGTCCTTCAGAATCTTCATCAGAACATTCTTGGTTGCTACACAAGTTATCGTTGCGTTGTGTATTCCGTTCTTCGGGTATCTCATGTCACTTGTTGGAGCATTGTTAAGTGCAACTGCATCTCTTACCATCCCTTGTGTTTGTTACATGAAGATTTCTCGAACTAAATGGGGTAGTGTTGAGATGGTTGCTATCCTAAGTGTTATAGTCTTGAGTATTCTTATTGTTGTTTTTGGTACCTACACTTCTTTGGTCCAAATCATTGGGGAAATCACCACTTCTTGA MSLILFFIIALAATYSGLLVKRCMQADSKIKTYSDIGEHAFGRIGKVVVSAVLYADLYMVVTGFLILEGDNLHNLFPQMSVELLGLTINGNSSFIVMVALILLPTVWLDDLSILAYVSAGGVVASFVILLSVVWVGAFDGVGFQHKGELFNLKGLPTAVSLFMFCYSAHPVFPPLYTSIQKKHQFSTVLLLCFTVCTLSYAAMAILGYAMFGPGVNSQITLNLPTSKLASQVAIYTTLVTPLAKYALMLKPVAITTESWFPTYQKNKSFRIFIRTFLVATQVIVALCIPFFGYLMSLVGALLSATASLTIPCVCYMKISRTKWGSVEMVAILSVIVLSILIVVFGTYTSLVQIIGEITTS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo18910.1 vs. NCBI nr
Match: gi|902223217|gb|KNA19391.1| (hypothetical protein SOVF_062000 [Spinacia oleracea]) HSP 1 Score: 672.5 bits (1734), Expect = 4.000e-190 Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 1
BLAST of Spo18910.1 vs. NCBI nr
Match: gi|731363102|ref|XP_010693246.1| (PREDICTED: vacuolar amino acid transporter 1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 590.9 bits (1522), Expect = 1.500e-165 Identity = 308/360 (85.56%), Postives = 339/360 (94.17%), Query Frame = 1
BLAST of Spo18910.1 vs. NCBI nr
Match: gi|731359854|ref|XP_010691501.1| (PREDICTED: proton-coupled amino acid transporter 3-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 450.7 bits (1158), Expect = 2.500e-123 Identity = 237/364 (65.11%), Postives = 295/364 (81.04%), Query Frame = 1
BLAST of Spo18910.1 vs. NCBI nr
Match: gi|731359865|ref|XP_010691506.1| (PREDICTED: lysine histidine transporter-like 3 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 447.6 bits (1150), Expect = 2.100e-122 Identity = 234/364 (64.29%), Postives = 295/364 (81.04%), Query Frame = 1
BLAST of Spo18910.1 vs. NCBI nr
Match: gi|802715270|ref|XP_012084707.1| (PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]) HSP 1 Score: 440.3 bits (1131), Expect = 3.300e-120 Identity = 221/358 (61.73%), Postives = 283/358 (79.05%), Query Frame = 1
BLAST of Spo18910.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIQ5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_062000 PE=4 SV=1) HSP 1 Score: 672.5 bits (1734), Expect = 2.800e-190 Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 1
BLAST of Spo18910.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BGQ5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g046750 PE=4 SV=1) HSP 1 Score: 590.9 bits (1522), Expect = 1.100e-165 Identity = 308/360 (85.56%), Postives = 339/360 (94.17%), Query Frame = 1
BLAST of Spo18910.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BLR7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g222370 PE=4 SV=1) HSP 1 Score: 450.7 bits (1158), Expect = 1.700e-123 Identity = 237/364 (65.11%), Postives = 295/364 (81.04%), Query Frame = 1
BLAST of Spo18910.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BLL4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g222410 PE=4 SV=1) HSP 1 Score: 447.6 bits (1150), Expect = 1.400e-122 Identity = 234/364 (64.29%), Postives = 295/364 (81.04%), Query Frame = 1
BLAST of Spo18910.1 vs. UniProtKB/TrEMBL
Match: A0A067JTC1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19851 PE=4 SV=1) HSP 1 Score: 440.3 bits (1131), Expect = 2.300e-120 Identity = 221/358 (61.73%), Postives = 283/358 (79.05%), Query Frame = 1
BLAST of Spo18910.1 vs. ExPASy Swiss-Prot
Match: AVT1_YEAST (Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 3.900e-20 Identity = 94/376 (25.00%), Postives = 171/376 (45.48%), Query Frame = 1
BLAST of Spo18910.1 vs. ExPASy Swiss-Prot
Match: ANTL2_ARATH (Amino acid transporter ANTL2 OS=Arabidopsis thaliana GN=At4g38250 PE=1 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 2.100e-10 Identity = 94/348 (27.01%), Postives = 151/348 (43.39%), Query Frame = 1
BLAST of Spo18910.1 vs. ExPASy Swiss-Prot
Match: ANTL1_ARATH (Amino acid transporter ANTL1 OS=Arabidopsis thaliana GN=At2g42005 PE=2 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 4.500e-8 Identity = 95/372 (25.54%), Postives = 163/372 (43.82%), Query Frame = 1
BLAST of Spo18910.1 vs. ExPASy Swiss-Prot
Match: S36A3_HUMAN (Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=2 SV=2) HSP 1 Score: 55.1 bits (131), Expect = 1.900e-6 Identity = 82/337 (24.33%), Postives = 150/337 (44.51%), Query Frame = 1
BLAST of Spo18910.1 vs. TAIR (Arabidopsis)
Match: AT3G28960.1 (Transmembrane amino acid transporter family protein) HSP 1 Score: 381.3 bits (978), Expect = 6.400e-106 Identity = 189/359 (52.65%), Postives = 262/359 (72.98%), Query Frame = 1
BLAST of Spo18910.1 vs. TAIR (Arabidopsis)
Match: AT5G15240.1 (Transmembrane amino acid transporter family protein) HSP 1 Score: 343.2 bits (879), Expect = 1.900e-94 Identity = 186/358 (51.96%), Postives = 256/358 (71.51%), Query Frame = 1
BLAST of Spo18910.1 vs. TAIR (Arabidopsis)
Match: AT2G39130.1 (Transmembrane amino acid transporter family protein) HSP 1 Score: 295.8 bits (756), Expect = 3.600e-80 Identity = 150/359 (41.78%), Postives = 239/359 (66.57%), Query Frame = 1
BLAST of Spo18910.1 vs. TAIR (Arabidopsis)
Match: AT2G41190.1 (Transmembrane amino acid transporter family protein) HSP 1 Score: 274.6 bits (701), Expect = 8.500e-74 Identity = 145/354 (40.96%), Postives = 227/354 (64.12%), Query Frame = 1
BLAST of Spo18910.1 vs. TAIR (Arabidopsis)
Match: AT5G02180.1 (Transmembrane amino acid transporter family protein) HSP 1 Score: 274.6 bits (701), Expect = 8.500e-74 Identity = 138/360 (38.33%), Postives = 235/360 (65.28%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo18910.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo18910.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo18910.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 4
BLAST of Spo18910.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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