Spo18947 (gene) | SpinachBase

Overview


Name	Spo18947
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	YEATS family protein
Location	SpoScf_31221 : 782 .. 1163 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCACCATTTGAAGCTATACCCTTTAGAACAGAATGGTCCACAGTCTACCAAGAAGCCCGTTGTTATGGAAACATATGATGAAGTTGTTTTTCCTGACCCTTCGGAACAGTTTCTTGCTCGTGTACAGAATCACCCTGCTGTTGTTGTGCCTCGGCTTCCTGCAGGTTTGGAGTTGCCATCTTCGGGTATGATGTGGTTCTTCTTCCGTCTTTGTTTTTATCGTGGATTTACTTTTTGTGAACTTGATTTGTCGGTTTATTTTAATGACATAGCTTCTACTGAAGAGCGCAGAGGGAGCATGAAAGATCACCCACTAGGCCATTGGTTCATGAATTTTTCGGAAGCTGATGAATTGCTGAAACTTGCTGCAGCTCGTCAA

mRNA sequence

ATTTCACCATTTGAAGCTATACCCTTTAGAACAGAATGGTCCACAGTCTACCAAGAAGCCCGTTGTTATGGAAACATATGATGAAGTTGTTTTTCCTGACCCTTCGGAACAGTTTCTTGCTCGTGTACAGAATCACCCTGCTGTTGTTGTGCCTCGGCTTCCTGCAGGTTTGGAGTTGCCATCTTCGGCTTCTACTGAAGAGCGCAGAGGGAGCATGAAAGATCACCCACTAGGCCATTGGTTCATGAATTTTTCGGAAGCTGATGAATTGCTGAAACTTGCTGCAGCTCGTCAA

Coding sequence (CDS)

ATGGAAACATATGATGAAGTTGTTTTTCCTGACCCTTCGGAACAGTTTCTTGCTCGTGTACAGAATCACCCTGCTGTTGTTGTGCCTCGGCTTCCTGCAGGTTTGGAGTTGCCATCTTCGGCTTCTACTGAAGAGCGCAGAGGGAGCATGAAAGATCACCCACTAGGCCATTGGTTCATGAATTTTTCGGAAGCTGATGAATTGCTGAAACTTGCTGCAGCTCGTCAA

Protein sequence

METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTEERRGSMKDHPLGHWFMNFSEADELLKLAAARQ

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo18947.1	Spo18947.1	mRNA

Homology

[Close]

BLAST of Spo18947.1 vs. NCBI nr
Match: gi|902224681|gb|KNA19850.1| (hypothetical protein SOVF_057580 isoform A [Spinacia oleracea])

HSP 1 Score: 157.9 bits (398), Expect = 6.900e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

		  
Query: 1   METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTEERRGSMKDHPLGHWFM 60
           METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTEERRGSMKDHPLGHWFM
Sbjct: 163 METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTEERRGSMKDHPLGHWFM 222

Query: 61  NFSEADELLKLAAARQ 77
           NFSEADELLKLAAARQ
Sbjct: 223 NFSEADELLKLAAARQ 238

[Close]

BLAST of Spo18947.1 vs. NCBI nr
Match: gi|902224682|gb|KNA19851.1| (hypothetical protein SOVF_057580 isoform B [Spinacia oleracea])

HSP 1 Score: 144.8 bits (364), Expect = 6.100e-32
Identity = 72/76 (94.74%), Postives = 72/76 (94.74%), Query Frame = 1

		  
Query: 1   METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTEERRGSMKDHPLGHWFM 60
           METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSS    ERRGSMKDHPLGHWFM
Sbjct: 163 METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSS----ERRGSMKDHPLGHWFM 222

Query: 61  NFSEADELLKLAAARQ 77
           NFSEADELLKLAAARQ
Sbjct: 223 NFSEADELLKLAAARQ 234

[Close]

BLAST of Spo18947.1 vs. NCBI nr
Match: gi|902043419|gb|KNA02800.1| (hypothetical protein SOVF_215260 [Spinacia oleracea])

HSP 1 Score: 142.5 bits (358), Expect = 3.000e-31
Identity = 76/105 (72.38%), Postives = 76/105 (72.38%), Query Frame = 1

		  
Query: 1   METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSS-------------------- 60
           METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSS                    
Sbjct: 132 METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSGMMWFFFRLCFYRGFTFCEL 191

Query: 61  ---------ASTEERRGSMKDHPLGHWFMNFSEADELLKLAAARQ 77
                    ASTEERRGSMKDHPLGHWFMNFSEADELLKLAAARQ
Sbjct: 192 DLSVYFNDIASTEERRGSMKDHPLGHWFMNFSEADELLKLAAARQ 236

[Close]

BLAST of Spo18947.1 vs. NCBI nr
Match: gi|731337582|ref|XP_010679864.1| (PREDICTED: transcription initiation factor TFIID subunit 14b [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 139.4 bits (350), Expect = 2.600e-30
Identity = 67/79 (84.81%), Postives = 74/79 (93.67%), Query Frame = 1

		  
Query: 1   METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTEE---RRGSMKDHPLGH 60
           +E+YDEVVFPDPSE+FLAR+QN+PAV+VPRLPAGLELPSSAS EE   RRG+ KDHPLGH
Sbjct: 156 VESYDEVVFPDPSERFLARIQNYPAVIVPRLPAGLELPSSASVEENNDRRGNTKDHPLGH 215

Query: 61  WFMNFSEADELLKLAAARQ 77
           WFMNFSEADELLKLAAARQ
Sbjct: 216 WFMNFSEADELLKLAAARQ 234

[Close]

BLAST of Spo18947.1 vs. NCBI nr
Match: gi|1021516905|ref|XP_016201955.1| (PREDICTED: transcription initiation factor TFIID subunit 14b [Arachis ipaensis])

HSP 1 Score: 122.5 bits (306), Expect = 3.200e-25
Identity = 60/80 (75.00%), Postives = 65/80 (81.25%), Query Frame = 1

		  
Query: 1   METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTE----ERRGSMKDHPLG 60
           +E+YDE+VFPDPSE FLARVQNHPAVVVPRLPAGL LPS    E    + RG  KDHPL 
Sbjct: 166 VESYDEIVFPDPSEGFLARVQNHPAVVVPRLPAGLNLPSPVPIETGNGKERGDTKDHPLS 225

Query: 61  HWFMNFSEADELLKLAAARQ 77
            WF+NFSEADELLKLAAARQ
Sbjct: 226 QWFLNFSEADELLKLAAARQ 245

[Close]

BLAST of Spo18947.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RK29_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_057580 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 4.800e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

		  
Query: 1   METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTEERRGSMKDHPLGHWFM 60
           METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTEERRGSMKDHPLGHWFM
Sbjct: 163 METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTEERRGSMKDHPLGHWFM 222

Query: 61  NFSEADELLKLAAARQ 77
           NFSEADELLKLAAARQ
Sbjct: 223 NFSEADELLKLAAARQ 238

[Close]

BLAST of Spo18947.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RK05_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_057580 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.200e-32
Identity = 72/76 (94.74%), Postives = 72/76 (94.74%), Query Frame = 1

		  
Query: 1   METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTEERRGSMKDHPLGHWFM 60
           METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSS    ERRGSMKDHPLGHWFM
Sbjct: 163 METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSS----ERRGSMKDHPLGHWFM 222

Query: 61  NFSEADELLKLAAARQ 77
           NFSEADELLKLAAARQ
Sbjct: 223 NFSEADELLKLAAARQ 234

[Close]

BLAST of Spo18947.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6U8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_215260 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.100e-31
Identity = 76/105 (72.38%), Postives = 76/105 (72.38%), Query Frame = 1

		  
Query: 1   METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSS-------------------- 60
           METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSS                    
Sbjct: 132 METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSGMMWFFFRLCFYRGFTFCEL 191

Query: 61  ---------ASTEERRGSMKDHPLGHWFMNFSEADELLKLAAARQ 77
                    ASTEERRGSMKDHPLGHWFMNFSEADELLKLAAARQ
Sbjct: 192 DLSVYFNDIASTEERRGSMKDHPLGHWFMNFSEADELLKLAAARQ 236

[Close]

BLAST of Spo18947.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F1R4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g130030 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.800e-30
Identity = 67/79 (84.81%), Postives = 74/79 (93.67%), Query Frame = 1

		  
Query: 1   METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTEE---RRGSMKDHPLGH 60
           +E+YDEVVFPDPSE+FLAR+QN+PAV+VPRLPAGLELPSSAS EE   RRG+ KDHPLGH
Sbjct: 156 VESYDEVVFPDPSERFLARIQNYPAVIVPRLPAGLELPSSASVEENNDRRGNTKDHPLGH 215

Query: 61  WFMNFSEADELLKLAAARQ 77
           WFMNFSEADELLKLAAARQ
Sbjct: 216 WFMNFSEADELLKLAAARQ 234

[Close]

BLAST of Spo18947.1 vs. UniProtKB/TrEMBL
Match: B9SXM8_RICCO (YEATS domain-containing protein, putative OS=Ricinus communis GN=RCOM_0017880 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.900e-25
Identity = 57/77 (74.03%), Postives = 65/77 (84.42%), Query Frame = 1

		  
Query: 1   METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSAS-TEERRGSMKDHPLGHWF 60
           +E+Y+E+VFPDPSE FLARVQNHPAV+VPRLPAG  LP+      E+RG  KDHPL HWF
Sbjct: 163 VESYNEIVFPDPSENFLARVQNHPAVIVPRLPAGFNLPTPMEIVNEKRGDTKDHPLYHWF 222

Query: 61  MNFSEADELLKLAAARQ 77
           +NFSEADELLKLAAARQ
Sbjct: 223 LNFSEADELLKLAAARQ 239

[Close]

BLAST of Spo18947.1 vs. ExPASy Swiss-Prot
Match: TA14B_ARATH (Transcription initiation factor TFIID subunit 14b OS=Arabidopsis thaliana GN=TAF14B PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.600e-24
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1

		  
Query: 1   METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTEE----RRGSMKDHPLG 60
           +E+YDE+VFPDPSE FLARVQNHPA+  PRLP+G  LP+    E+    +RG  KDH LG
Sbjct: 160 VESYDEIVFPDPSESFLARVQNHPALTFPRLPSGYNLPAPMQVEDTGKKKRGDTKDHSLG 219

Query: 61  HWFMNFSEADELLKLAAARQ 77
            WFM+FSEADELL+LAAARQ
Sbjct: 220 QWFMSFSEADELLQLAAARQ 239

[Close]

BLAST of Spo18947.1 vs. ExPASy Swiss-Prot
Match: TAF14_ARATH (Transcription initiation factor TFIID subunit 14 OS=Arabidopsis thaliana GN=TAF14 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.500e-17
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1

		  
Query: 2   ETYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTEE----RRGSMKDHPLGH 61
           E+Y+EVVFPDP E F+ARV NHPA+ +  +P GL LP     +      +G  K+HPL  
Sbjct: 159 ESYNEVVFPDPFESFVARVHNHPAIQISNIPDGLNLPPPGVADTYYLMEKGDTKEHPLSP 218

Query: 62  WFMNFSEADELLKLAAARQ 77
           WF+ FSE +EL KL AARQ
Sbjct: 219 WFLKFSEVEELFKLTAARQ 237

[Close]

BLAST of Spo18947.1 vs. TAIR (Arabidopsis)
Match: AT5G45600.1 (YEATS family protein)

HSP 1 Score: 112.8 bits (281), Expect = 9.000e-26
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1

		  
Query: 1   METYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTEE----RRGSMKDHPLG 60
           +E+YDE+VFPDPSE FLARVQNHPA+  PRLP+G  LP+    E+    +RG  KDH LG
Sbjct: 160 VESYDEIVFPDPSESFLARVQNHPALTFPRLPSGYNLPAPMQVEDTGKKKRGDTKDHSLG 219

Query: 61  HWFMNFSEADELLKLAAARQ 77
            WFM+FSEADELL+LAAARQ
Sbjct: 220 QWFMSFSEADELLQLAAARQ 239

[Close]

BLAST of Spo18947.1 vs. TAIR (Arabidopsis)
Match: AT2G18000.2 (TBP-associated factor 14)

HSP 1 Score: 89.0 bits (219), Expect = 1.400e-18
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1

		  
Query: 2   ETYDEVVFPDPSEQFLARVQNHPAVVVPRLPAGLELPSSASTEE----RRGSMKDHPLGH 61
           E+Y+EVVFPDP E F+ARV NHPA+ +  +P GL LP     +      +G  K+HPL  
Sbjct: 159 ESYNEVVFPDPFESFVARVHNHPAIQISNIPDGLNLPPPGVADTYYLMEKGDTKEHPLSP 218

Query: 62  WFMNFSEADELLKLAAARQ 77
           WF+ FSE +EL KL AARQ
Sbjct: 219 WFLKFSEVEELFKLTAARQ 237

The following BLAST results are available for this feature:

BLAST of Spo18947.1 vs. NCBI nr
BLAST of Spo18947.1 vs. UniProtKB/TrEMBL
BLAST of Spo18947.1 vs. ExPASy Swiss-Prot
BLAST of Spo18947.1 vs. TAIR (Arabidopsis)

BLAST of Spo18947.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902224681\|gb\|KNA19850.1\|	6.9e-36	100.	hypothetical protein SOVF_0575...	[more]
gi\|902224682\|gb\|KNA19851.1\|	6.1e-32	94.7	hypothetical protein SOVF_0575...	[more]
gi\|902043419\|gb\|KNA02800.1\|	3.0e-31	72.3	hypothetical protein SOVF_2152...	[more]
gi\|731337582\|ref\|XP_010679864.1\|	2.6e-30	84.8	PREDICTED: transcription initi...	[more]
gi\|1021516905\|ref\|XP_016201955.1\|	3.2e-25	75.0	PREDICTED: transcription initi...	[more]

BLAST of Spo18947.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9RK29_SPIOL	4.8e-36	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9RK05_SPIOL	4.2e-32	94.7	Uncharacterized protein OS=Spi...	[more]
A0A0K9Q6U8_SPIOL	2.1e-31	72.3	Uncharacterized protein OS=Spi...	[more]
A0A0J8F1R4_BETVU	1.8e-30	84.8	Uncharacterized protein OS=Bet...	[more]
B9SXM8_RICCO	2.9e-25	74.0	YEATS domain-containing protei...	[more]

BLAST of Spo18947.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2

Position :

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x 1


Match Name	E-value	Identity	Description
TA14B_ARATH	1.6e-24	66.2	Transcription initiation facto...	[more]
TAF14_ARATH	2.5e-17	51.9	Transcription initiation facto...	[more]

BLAST of Spo18947.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT5G45600.1	9.0e-26	66.2	YEATS family protein	[more]
AT2G18000.2	1.4e-18	51.9	TBP-associated factor 14	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005033	YEATS	PANTHER	PTHR23195	YEATS DOMAIN	coord: 1..76 score: 3.7
None	No IPR available	PANTHER	PTHR23195:SF26	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 14	coord: 1..76 score: 3.7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006396	RNA processing
biological_process	GO:0070475	rRNA base methylation
biological_process	GO:0030488	tRNA methylation
biological_process	GO:0006448	regulation of translational elongation
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0008173	RNA methyltransferase activity
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo18052	0.86	Barchart \| Table
Spo01806	0.73	Barchart \| Table
Spo20326	0.69	Barchart \| Table
Spo22023	0.68	Barchart \| Table
Spo03527	0.65	Barchart \| Table
Spo16460	0.65	Barchart \| Table