Spo18987 (gene)

Overview
NameSpo18987
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_114 : 922215 .. 924574 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGCAGAAATCTACTATTTTTTAAATCTAAATCCAAAATGAGATTTCTTTGTGTTGACCTTATTCACTCCAGGTAATTGTATTTATTTATTTTACTTCAATGTTAGATTTTTTTTTCCTTCAATTTTTCTACGGATCGGGACCCTTTAAGATGAATTTGAGTCCCTTTGTTTTGTTCCTGGTGAATTATAGATCTGGTGTTGTGTTTATGAGTTTCTTCTTTTTTTGTTCTGTTTCAAAAAAATTGGTTTTCTCTCTTCAACTTGTCGAGTATTTCGGGAATTAGGGTTATTGATTTTGTTTCTATTATTTTGGTTTGATTCATGATGATGAGGGACCCTGAACGATCCGCAGATTCTATTATGAAGTCACACCTGATATCACAGATGCTCCAAAAGACCAAGTACAGGATCAAGGTTTGTTGGGTTTTTAATATTTAATTTTTTTGCCATTTTTTCAGCTAATAGCTATTGATAATGCTCATTTTTTTCTTATGAATTTTACTTTGCACTTAAATTAATTAAATGATCCTGGAATTGCAATTGTTGCATAAAATGGTGGGTGTTTGGGGGCAATGTGAATCTTCTTATGTCTTGCTCTATTGATGTGTAAGCGTATGAGTCGGTTTTTGGTTTTTAATACATTATGTTGGATCGTAATGATTGAACTAAAGGGTTCTGATGTTTCTGGACTATAGAATCGGGCAACTTTGATAGTCGGGAGATTCATTCAATTGAAGTCACAGACAATGAAAACATTGTAGTTTATTGTTTTTACTGTTGCCAAGCAGGGTCAGGGGTTAGTAACTCTAGGTTGTTGAATTTTCTCCGTTGTATTCATACATTTCATTGTGAGAAGAGAAACAAACAAAATCAATGTGTAGGAGCACAAAAATTTTAGTCTGCACAGTCTTTATTTATCACTAGTAAACTTTAACTTCGAAATTCAACTACTTTATGATATTGAGCTGCAAATTCATCTATAATGTAATGGCTAGGTTAGTAAATTGGCACTGATTTCATATTGAATGAGGATGACATTGCAGAAATGTGTCTGTTGGTGCCCTGTTTGTGTTTATTTTAGTAGCTAATTTTAGGCCTTATTATCATCAACTATCTAGCACTACTACAAAATGCGTCATTTGAGTTTTTTAATTGATTGTTTTTTACAGTCCAACCCCTTCTTTATTTTCGCAGTATTTGCCGCTTGAACAATTTTATAGTTTCGTTTCACTTTTTGTTATTAGATGCTAAGGGATTTCTTAATTGATAATTTTAGAATAAAAATTCAATTGTTACAAGTCTTTTTCCCCCCTCTTGTATCTGACTGTGGATGCAGCCATGATGCATTTAATATCTTCCGTTGTATCATGTTTGATTGATGATTATATTGAGTAATTGTAAACTGCTATTCTAAGTTGTTGTCACATGTGGTTTGCTGGCCATTTTAGGCACAATGAAAGCTTCAGTAATATTTTCAGTTCTAAATATCAAGCATCAGTTACATCATGAATGACAGAGTATACTGAATAAATTTTATCTATTAGTGCCTGGAAGGATAGAAAACATGCTTGTCTATTCTAAGTCTATGTCTCTATTCCTACCAGTTACATTTCCTGTTTCCTGTTAATTTCCATGTTCCCAATTTTACGAGTTTGGTACTAGAATTATTTTCATTACACTATCTAAGTTGATGATGACTGTTTGAGCATCTGCTGGATTTAGATTAATTTCATATTTCTTGATCAACACTACTACAATTTCCGTAGTTTCTCGACGCTGTACAAATTTGCTGAGGCTGGATTTAATCTAAAAAAATCTTATAGAATCTCATTTACACGAGTGTCCAGTTTAGATTTCAGACTATTACATACGGAATACTAGATTCAGGGCAGTTGAGTATTGAATTACTATTTTATTGTCATTTGCATGATTAGGCGTATAGCGTAAATGTTGCACTGGCTGAATATGTCTTATGTATAGCGTAAAAGTTTGACAAGGCGTAACACTACTTGTGTTTTTCAAGAAATAAATGATTCTTGTTCTTGCCAAGATGTATTTCTTGCATTACTCTTCAAGCTGAAGGCCAACTCTTGTTTTTTTTACAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGATGTAAGCTGCTTGTTTCTCAATTCCATAATTCTTCAATCAGAATAGTTTTTTTTAGAAGCTTACAGTGGGGTAAAAACCAACGTGACTGGTGTTTCATTGACTGACTGACCGGTGGTGCACTGGCTGAATATGCAGTGGAAAAAGAGACATGACAGTTGCTAG

mRNA sequence

CTGCAGAAATCTACTATTTTTTAAATCTAAATCCAAAATGAGATTTCTTTGTGTTGACCTTATTCACTCCAGATTCTATTATGAAGTCACACCTGATATCACAGATGCTCCAAAAGACCAAGTACAGGATCAAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGATTGGAAAAAGAGACATGACAGTTGCTAG

Coding sequence (CDS)

ATGAGATTTCTTTGTGTTGACCTTATTCACTCCAGATTCTATTATGAAGTCACACCTGATATCACAGATGCTCCAAAAGACCAAGTACAGGATCAAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGATTGGAAAAAGAGACATGACAGTTGCTAG

Protein sequence

MRFLCVDLIHSRFYYEVTPDITDAPKDQVQDQGTDVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo18987.1Spo18987.1mRNA


Homology
[Close]
BLAST of Spo18987.1 vs. NCBI nr
Match: gi|902052257|gb|KNA02862.1| (hypothetical protein SOVF_214630, partial [Spinacia oleracea])

HSP 1 Score: 79.0 bits (193), Expect = 3.800e-12
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 

		  

Query: 35 DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC 72
          DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC
Sbjct: 1  DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC 37
[Close]
BLAST of Spo18987.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6X5_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_214630 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.700e-12
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 

		  

Query: 35 DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC 72
          DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC
Sbjct: 1  DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC 37
The following BLAST results are available for this feature:
BLAST of Spo18987.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902052257|gb|KNA02862.1|3.8e-12100.hypothetical protein SOVF_2146... [more]
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BLAST of Spo18987.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9Q6X5_SPIOL2.7e-12100.Uncharacterized protein (Fragm... [more]
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BLAST of Spo18987.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo18987.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011032GroES-likeGENE3D3.90.180.10coord: 31..60
score: 1.
IPR011032GroES-likeunknownSSF50129GroES-likecoord: 32..70
score: 1.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009945 radial axis specification
biological_process GO:0006515 protein quality control for misfolded or incompletely synthesized proteins
biological_process GO:0006325 chromatin organization
biological_process GO:0006281 DNA repair
biological_process GO:0009909 regulation of flower development
biological_process GO:0007165 signal transduction
biological_process GO:0048653 anther development
biological_process GO:0048508 embryonic meristem development
biological_process GO:0009942 longitudinal axis specification
biological_process GO:0009846 pollen germination
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0016560 protein import into peroxisome matrix, docking
biological_process GO:0006397 mRNA processing
biological_process GO:0016049 cell growth
biological_process GO:0000902 cell morphogenesis
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0061025 membrane fusion
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0032482 Rab protein signal transduction
biological_process GO:0006525 arginine metabolic process
biological_process GO:0006420 arginyl-tRNA aminoacylation
biological_process GO:0006560 proline metabolic process
biological_process GO:0016485 protein processing
biological_process GO:0009637 response to blue light
biological_process GO:0048527 lateral root development
biological_process GO:0006412 translation
biological_process GO:0040007 growth
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0008152 metabolic process
biological_process GO:0006886 intracellular protein transport
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005773 vacuole
cellular_component GO:0005622 intracellular
cellular_component GO:0016020 membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0005634 nucleus
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005782 peroxisomal matrix
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005840 ribosome
molecular_function GO:0042802 identical protein binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0019003 GDP binding
molecular_function GO:0004176 ATP-dependent peptidase activity
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0009881 photoreceptor activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003913 DNA photolyase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003924 GTPase activity
molecular_function GO:0004814 arginine-tRNA ligase activity
RNA-Seq Expression