Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTTTGTAACTTACCTTAATTGTGCCTATTATCAATAAAACACACAAATTTTCGCTCCCTCATTTTCAGAAGAAGAAAACCCTTATTTTCCTATCTCCTTCCCTCGCCGGTTTTCCCTTACAGTTACCACGCTCTCTCGCTTCTCTAATCAATATCGACCAATGTTAAAGAAAAATACACGCTCTGTCGCCACTCTCCTCCATCCACCCAGAATTTTCGAGTTACAAGAGTGGGTTGATTTCAATTTTCTTTATTTGTCTCTACATATATTCAATTTGAAATCTCAACTCAGTGTTCACTGTTTCTAGATATAACCGGAGGTAAATTCCTGCTAACTACTCAACCACAGTCGGCTTTCGATTTTCTAAAATTCATTTTTATTTTCTTCTATATGTCGAATTCCTAAATCTTGATTTGGATTCGTTTTCAAATTTCCGCTTAATTAATTTTGATTCATGATTTGGCTACAGTTTGTGTTGGTTGTTGCTCGCAATCATTGTAGCTATTGCAGTTATTATGGAACGCTTAATTTTTCATCAATTGTCAAAAGTATGCCGAAAGTATCGAGTTGAGCTCAAAGTTTATAATGCTATGCCCAAAATTCATGTCAGTTTGAATAATAAAAAAAAAAGGTAGATTGATAGTGGATGTAAGGATTTTAGTGTTCATCTATTGAAAGAGTTGTATAATGGCGATCAAAATTCCGGCCAGCTTGCTATTTTTTTGATTCCTTGAATCGAGCTCACTTGTTCTAATAAGAGATTTTAGTTTTACTAATTGGGGACTAAAGAGTGTGATTAGTTCTTTATTTCTTGGTGTCTACTTATATGAATGAATTAGGGATCGGATGAGATTGGTTCTACAATAAACGTACTTGAAAGTTATTAGTTGAGTATTTGTGTAAGTGAGGGAGTGTGTGGGTGGTTCTGGGGCTGCCAGGCATGTTGGGCTGGTTATGCGTGTCTTAGGGACTGGTTATACTGCACTTTCGGAGCTACTAGTCTTGTGGTATATCTGGTTTAATTCTTGAATAATAGTTAAATGTCAAGTACTCAGGCTCAAGTGTTACAGATTGAACCATCCGCTTAACTGAGCTTAGTATTGTTGCTCTTAAATTCATGTTAACTTTACCTCTAGCTCCCTTTGTCTAACAAGAATATTTTCTCAACATCATTGCTTTGATCAGTTTTCAACTTGAGCCTTAGAGTATGAAAAATGCATTTAACTAGACAAATCAAGAAGGCTAAGAGAAGGTCATTGATTAGCTTGGTCACGATTAAGTAGAACAGTTCTTTATTGGGCTTATTAATGATTGGATTAAACCTTGCCTCCCTTAAATGAGTTTTACCTTAAAAGTTAGTTGGAATTGTGCTAGTCTTGTATTATTATCTGTCCGTTGAGTGAAACCCTTTTTCTGTCATAAGATAGTTTTATAGGATGTGTTGATAAGCAGGTTGCTCAAGACTTCAAGAGCATTAGCAATCACTTATCGTGTACCCTCTCCAGTCACTAGAGAGAAGTTCAAATTGAGTTTTTATGTTGATCTCTGTCTTATGTCATACATTCTCCACAAATATAGTTAGGACTCAATTCTTTGTGTGCCTCCCAAACATTAACGAGAATATTCTACCATAGACTGCAAACAGAGTTGGACCTAGAATCAAGCCCCAAGCTCATCTGATAAAATTCTTGAATATTTGGTATTACTTCCCTAGTTTTGTACACTCAATACTTTTGCAAGAGCACATTATTGATTCCTGAAGATGATGACAATACTTTGTCTCTAGCATAATTTTATATTATTCTTATGCTGGTTAACTTGCATAAACCATTGTGAAAAACCTTTCCTTCAAAATAAAATGTTCTGAAGGTTTTTGGTAGACAATGATAGCAGAATCAAGACAATCCCAAAAACCAAGTCCCTGGTGAACGCGTACATGTGCATTTAGTGTTTGGCAGAGACGACTGGAGAACTTGAATCCACCAGATGTAAGTCGTTTTATGAATAGATTCTTTTGAATATATAGATAATTCCCCCGTTCAAAAGGAATATATTAAAGCCCCACTGATATGTATTTTGCAGGTTGAATATTGTGATTATTGTCCTGAGTCGAAGCAGCCTGACATTCAGATTTAAAATGATGATACTACGGATTCAACCATCAATTTCGATCCTGAAAGGATGATTGAAATCATTGGAGGTAAAAATTATCCATCATTACTTGTGTGTTTTGTTTGCAATTTCCATTCTAATACAATTTCCAAGGTATGTTTGATTGTTTTCTGTAAGTCATATATTTCTAGTGTCTAGTTTTATTTTTTTGGGAATCTTACCAGGTGCTCTAGCTATATAGCATTGGAACTTGCAATTGATTATACTGATAGCATTGAATGCATATGCTATACTTATGGTGGAAAAACTTAGTATTCTCTAGCTATTTTATTCACTGAACCTAATTGCCCATAATCTTGAGGGTCTGGTATAACGAATTGGAAGTTTTAGGGGAAAGGTGTGCTCTATAAGCTAGGCATTTTATATTGTACAATCGGTTATGCAATTAAAAAAAATACTAATGTGTCATATCTCAGAACTACGGGAAGAAAGGCTCGCTGCAACCGAGCACACAATGGAAACATAAATTTATGAGATTTCTATTGCAGACTCAAACTTAGTTTTCAAATAATGAAAATATAAACGTCCATTCTAACCTATTCTTCTTCCCCCCCTGTTACATTGACCACTAAAATACTTCATTCTTAGCTTAAATCAATCGACGGGTAGAGGATACAAATACTACGTAGCAAGAAAGGGCCTCTTTATTAAATCTACCTACCGGCGAATCATTAAGTATGAGTAGTTAGGACAACATGATAAATAGTTCCACGTGAAAAATATTACTGATTTGAAATCATTCTTTTGCACTCCGTAGTTTCTACGGGAAATTATGAGTGGTTGAGACATTGTGACAACTAATTCTAAGCGGTTTAAAATTATTTTCTGTACACTTTGCACTGTAAAAGGCCCAAACAAGTCTTAAAAAATCCAACGAATCACCTATGCTGGCGTGTGCAAAAACCATTCTTCATTCTTCCAGGTATTATTCTTTATTCTGCTAGAGTTACACATTAGCCTCCTACCATGAAAGGTATGGAGTAACAACGATATGTAACTGAAGGTTTAAGGATGGAGCACTATTCAGGGCTTCCATCTCCTCCCTCTAGAGAGGGTATTGTATCTAGGATCTTGTAGGAGGCGGTTGCTATAATTTACATTACCAAAATATTTTGTAATACTATGATATGTTTCATGCTTCTAAAATCTGAATGTATATTTTACTTCTTTTGTTAATGCAGAGATAAGTATGGATGGCTTGAGAAGCTTGGTAAATAAGTTGGAAAACATAAACGAAAATAGTCCTGCGAAATGGCTTCCGATGTCTGTTCCTCTACCAGAGACTCTAACTGAGTCCATGGAGTTCTTAGCAAGATCATGGAGTATCTCAGCAACAGACTCAGCAAAGCTCTCCTTTGAGAAGACACTGTTTGAGTTTCTTAGTGATGAACTGAATCTGAATATGACAAATACCTTGCTGTCAAATGAATATGCAACTAATCATCTTATACAGCTCCAGTATGTAAGTCATTTTATATAGCTCATGTAATTGTTTTTTTATGAATTTTGTTTTCATTTTTTGCAGGAAGTGGAATGACCGCGATGTGGACATAGTCCTCTAG TTTTGTAACTTACCTTAATTGTGCCTATTATCAATAAAACACACAAATTTTCGCTCCCTCATTTTCAGAAGAAGAAAACCCTTATTTTCCTATCTCCTTCCCTCGCCGGTTTTCCCTTACAGTTACCACGCTCTCTCGCTTCTCTAATCAATATCGACCAATGTTAAAGAAAAATACACGCTCTGTCGCCACTCTCCTCCATCCACCCAGAATTTTCGAGTTACAAGAGTGGGTTGATTTCAATTTTCTTTATTTGTCTCTACATATATTCAATTTGAAATCTCAACTCAGTGTTCACTGTTTCTAGATATAACCGGAGACAATGATAGCAGAATCAAGACAATCCCAAAAACCAAGTCCCTGGTGAACGCGTACATGTGCATTTAGTGTTTGGCAGAGACGACTGGAGAACTTGAATCCACCAGATGTTGAATATTGTGATTATTGTCCTGAGTCGAAGCAGCCTGACATTCAGATTTAAAATGATGATACTACGGATTCAACCATCAATTTCGATCCTGAAAGGATGATTGAAATCATTGGAGAGATAAGTATGGATGGCTTGAGAAGCTTGGTAAATAAGTTGGAAAACATAAACGAAAATAGTCCTGCGAAATGGCTTCCGATGTCTGTTCCTCTACCAGAGACTCTAACTGAGTCCATGGAGTTCTTAGCAAGATCATGGAGTATCTCAGCAACAGACTCAGCAAAGCTCTCCTTTGAGAAGACACTGTTTGAGTTTCTTAGTGATGAACTGAATCTGAATATGACAAATACCTTGCTGTCAAATGAATATGCAACTAATCATCTTATACAGCTCCAGAAGTGGAATGACCGCGATGTGGACATAGTCCTCTAG ATGATTGAAATCATTGGAGAGATAAGTATGGATGGCTTGAGAAGCTTGGTAAATAAGTTGGAAAACATAAACGAAAATAGTCCTGCGAAATGGCTTCCGATGTCTGTTCCTCTACCAGAGACTCTAACTGAGTCCATGGAGTTCTTAGCAAGATCATGGAGTATCTCAGCAACAGACTCAGCAAAGCTCTCCTTTGAGAAGACACTGTTTGAGTTTCTTAGTGATGAACTGAATCTGAATATGACAAATACCTTGCTGTCAAATGAATATGCAACTAATCATCTTATACAGCTCCAGAAGTGGAATGACCGCGATGTGGACATAGTCCTCTAG MIEIIGEISMDGLRSLVNKLENINENSPAKWLPMSVPLPETLTESMEFLARSWSISATDSAKLSFEKTLFEFLSDELNLNMTNTLLSNEYATNHLIQLQKWNDRDVDIVL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo19013.1 vs. NCBI nr
Match: gi|902215425|gb|KNA17479.1| (hypothetical protein SOVF_079570 [Spinacia oleracea]) HSP 1 Score: 115.9 bits (289), Expect = 4.400e-23 Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 1
BLAST of Spo19013.1 vs. NCBI nr
Match: gi|731317240|ref|XP_010668270.1| (PREDICTED: uncharacterized protein LOC104885270 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 103.2 bits (256), Expect = 2.900e-19 Identity = 56/92 (60.87%), Postives = 67/92 (72.83%), Query Frame = 1
BLAST of Spo19013.1 vs. NCBI nr
Match: gi|870867127|gb|KMT18026.1| (hypothetical protein BVRB_2g032200 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 98.6 bits (244), Expect = 7.200e-18 Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = 1
BLAST of Spo19013.1 vs. NCBI nr
Match: gi|566213465|ref|XP_002324805.2| (hypothetical protein POPTR_0018s00410g [Populus trichocarpa]) HSP 1 Score: 70.9 bits (172), Expect = 1.600e-9 Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1
BLAST of Spo19013.1 vs. NCBI nr
Match: gi|743842167|ref|XP_011026634.1| (PREDICTED: uncharacterized protein LOC105127167 isoform X3 [Populus euphratica]) HSP 1 Score: 69.7 bits (169), Expect = 3.600e-9 Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1
BLAST of Spo19013.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RET6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_079570 PE=4 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 3.000e-23 Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 1
BLAST of Spo19013.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FQH9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g032200 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 5.000e-18 Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = 1
BLAST of Spo19013.1 vs. UniProtKB/TrEMBL
Match: B9IKK1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s00410g PE=4 SV=2) HSP 1 Score: 70.9 bits (172), Expect = 1.100e-9 Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1
BLAST of Spo19013.1 vs. UniProtKB/TrEMBL
Match: A0A067GJJ4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015176mg PE=4 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 9.500e-9 Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1
BLAST of Spo19013.1 vs. UniProtKB/TrEMBL
Match: V4WBX9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008414mg PE=4 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 9.500e-9 Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo19013.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo19013.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo19013.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo19013.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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