Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCGTCTAAAATCTATTGCATTACTCATTGCCCTACTCGTTGCCACTTCTGCGGTATTGAGTGAGAGTAGGATTGCAAGGAAGGACTTGGGTTTAGACCTTGGTGGTGTAGGGTTAGGGTTGGGACTAGGGTTGGGTGTCGGTGGAGGGTCGGGCTCTGGAGCCGGTGCTGGTGCTGGTTCTGGGTCCGGTGGATCGAGTTCTAGTTCTAGCTCTTCTTCATCTAGCTCAAGCTCGGGTGGAGGTGGAGGTGGTGCAGGATCTGAAGCTGGCTCCTATGCCGGTTCACGTGCTGGTTCTGGGTCAAGATCACGAGGTGGTGGTCGTGGGGGAGGTGGCGGAGGTGGTGGTGGTGGTGGAGGAGGTGGTGGCGGCGGTGATGGTTCAGGGCAAGGGAGTGGTTATGGACATGGTGAAGGTGGTGGGTATGGACGTGGTGGAGGGTATGGCGATGATGATGGTGGGTACTAA ATGGCTCGTCTAAAATCTATTGCATTACTCATTGCCCTACTCGTTGCCACTTCTGCGGTATTGAGTGAGAGTAGGATTGCAAGGAAGGACTTGGGTTTAGACCTTGGTGGTGTAGGGTTAGGGTTGGGACTAGGGTTGGGTGTCGGTGGAGGGTCGGGCTCTGGAGCCGGTGCTGGTGCTGGTTCTGGGTCCGGTGGATCGAGTTCTAGTTCTAGCTCTTCTTCATCTAGCTCAAGCTCGGGTGGAGGTGGAGGTGGTGCAGGATCTGAAGCTGGCTCCTATGCCGGTTCACGTGCTGGTTCTGGGTCAAGATCACGAGGTGGTGGTCGTGGGGGAGGTGGCGGAGGTGGTGGTGGTGGTGGAGGAGGTGGTGGCGGCGGTGATGGTTCAGGGCAAGGGAGTGGTTATGGACATGGTGAAGGTGGTGGGTATGGACGTGGTGGAGGGTATGGCGATGATGATGGTGGGTACTAA ATGGCTCGTCTAAAATCTATTGCATTACTCATTGCCCTACTCGTTGCCACTTCTGCGGTATTGAGTGAGAGTAGGATTGCAAGGAAGGACTTGGGTTTAGACCTTGGTGGTGTAGGGTTAGGGTTGGGACTAGGGTTGGGTGTCGGTGGAGGGTCGGGCTCTGGAGCCGGTGCTGGTGCTGGTTCTGGGTCCGGTGGATCGAGTTCTAGTTCTAGCTCTTCTTCATCTAGCTCAAGCTCGGGTGGAGGTGGAGGTGGTGCAGGATCTGAAGCTGGCTCCTATGCCGGTTCACGTGCTGGTTCTGGGTCAAGATCACGAGGTGGTGGTCGTGGGGGAGGTGGCGGAGGTGGTGGTGGTGGTGGAGGAGGTGGTGGCGGCGGTGATGGTTCAGGGCAAGGGAGTGGTTATGGACATGGTGAAGGTGGTGGGTATGGACGTGGTGGAGGGTATGGCGATGATGATGGTGGGTACTAA MARLKSIALLIALLVATSAVLSESRIARKDLGLDLGGVGLGLGLGLGVGGGSGSGAGAGAGSGSGGSSSSSSSSSSSSSSGGGGGGAGSEAGSYAGSRAGSGSRSRGGGRGGGGGGGGGGGGGGGGGDGSGQGSGYGHGEGGGYGRGGGYGDDDGGY Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo19191.1 vs. NCBI nr
Match: gi|902193426|gb|KNA12298.1| (hypothetical protein SOVF_127170 [Spinacia oleracea]) HSP 1 Score: 193.4 bits (490), Expect = 3.100e-46 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1
BLAST of Spo19191.1 vs. NCBI nr
Match: gi|731352719|ref|XP_010687683.1| (PREDICTED: putative glycine-rich cell wall structural protein 1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 134.0 bits (336), Expect = 2.200e-28 Identity = 127/150 (84.67%), Postives = 136/150 (90.67%), Query Frame = 1
BLAST of Spo19191.1 vs. NCBI nr
Match: gi|593783597|ref|XP_007154839.1| (hypothetical protein PHAVU_003G152100g [Phaseolus vulgaris]) HSP 1 Score: 116.3 bits (290), Expect = 4.800e-23 Identity = 118/143 (82.52%), Postives = 127/143 (88.81%), Query Frame = 1
BLAST of Spo19191.1 vs. NCBI nr
Match: gi|922372805|ref|XP_013458559.1| (hypothetical protein MTR_4g129760 [Medicago truncatula]) HSP 1 Score: 111.7 bits (278), Expect = 1.200e-21 Identity = 117/144 (81.25%), Postives = 125/144 (86.81%), Query Frame = 1
BLAST of Spo19191.1 vs. NCBI nr
Match: gi|502150088|ref|XP_004507782.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cicer arietinum]) HSP 1 Score: 110.5 bits (275), Expect = 2.600e-21 Identity = 117/145 (80.69%), Postives = 126/145 (86.90%), Query Frame = 1
BLAST of Spo19191.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R023_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_127170 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 2.100e-46 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1
BLAST of Spo19191.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BU83_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g192010 PE=4 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 1.500e-28 Identity = 127/150 (84.67%), Postives = 136/150 (90.67%), Query Frame = 1
BLAST of Spo19191.1 vs. UniProtKB/TrEMBL
Match: V7CBV4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G152100g PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 3.300e-23 Identity = 118/143 (82.52%), Postives = 127/143 (88.81%), Query Frame = 1
BLAST of Spo19191.1 vs. UniProtKB/TrEMBL
Match: A0A072V362_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g129760 PE=4 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 8.200e-22 Identity = 117/144 (81.25%), Postives = 125/144 (86.81%), Query Frame = 1
BLAST of Spo19191.1 vs. UniProtKB/TrEMBL
Match: A0A0S3R811_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G469100 PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 2.600e-20 Identity = 114/143 (79.72%), Postives = 123/143 (86.01%), Query Frame = 1
BLAST of Spo19191.1 vs. TAIR (Arabidopsis)
Match: AT4G30460.1 (glycine-rich protein) HSP 1 Score: 100.5 bits (249), Expect = 9.600e-22 Identity = 113/155 (72.90%), Postives = 127/155 (81.94%), Query Frame = 1
BLAST of Spo19191.1 vs. TAIR (Arabidopsis)
Match: AT4G30450.1 (glycine-rich protein) HSP 1 Score: 85.5 bits (210), Expect = 3.200e-17 Identity = 72/105 (68.57%), Postives = 90/105 (85.71%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo19191.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo19191.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo19191.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo19191.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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