Spo19206 (gene) | SpinachBase

Overview


Name	Spo19206
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	rRNA intron-encoded homing endonuclease
Location	SpoScf_30023 : 125 .. 1059 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAACTCGACGGATCGCACGGCCTTTGCGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCATTGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTTGGGGTGGTACGACCGGTCCGCCTTTTGGTGTGCACCGGCCGTCTCGCCTCTTTCGCCGGTGATGCGCTCCTGGCCTTAATTGGCCGGGTCGTGCCTCCGGCACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATTATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACGCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA

mRNA sequence

ATGATAACTCGACGGATCGCACGGCCTTTGCGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGTTAAAAAGCTCGTAGTTGGACCTTGGGGTGGTACGACCGGTCCGCCTTTTGGTGTGCACCGGCCGTCTCGCCTCTTTCGCCGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACGCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA

Coding sequence (CDS)

ATGATAACTCGACGGATCGCACGGCCTTTGCGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGTTAAAAAGCTCGTAGTTGGACCTTGGGGTGGTACGACCGGTCCGCCTTTTGGTGTGCACCGGCCGTCTCGCCTCTTTCGCCGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACGCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA

Protein sequence

MITRRIARPLRRRRIIQISALSTFDVKKLVVGPWGGTTGPPFGVHRPSRLFRRRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGGSMVARLKLKGIDGRAPPGVEPAA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo19206.1	Spo19206.1	mRNA

Homology

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BLAST of Spo19206.1 vs. NCBI nr
Match: gi|922327215|ref|XP_013443000.1| (rRNA intron-encoded homing endonuclease, putative [Medicago truncatula])

HSP 1 Score: 172.6 bits (436), Expect = 4.900e-40
Identity = 100/147 (68.03%), Postives = 104/147 (70.75%), Query Frame = 1

		  
Query: 25  DVKKLVVGPWGGTTGPP-----------------------------FGV----HRPSRLF 84
           +VKKLVVGPW G+ GPP                             FG+    +R SR  
Sbjct: 195 NVKKLVVGPWVGSIGPPMVCTGWLVPSAGDALLALIGRDSDPIVLAFGIGVMINRDSR-G 254

Query: 85  RRRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFL 139
             RTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSK L
Sbjct: 255 HSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKSL 314

[Close]

BLAST of Spo19206.1 vs. NCBI nr
Match: gi|694380941|ref|XP_009366572.1| (PREDICTED: uncharacterized protein LOC103956333 [Pyrus x bretschneideri])

HSP 1 Score: 167.9 bits (424), Expect = 1.200e-38
Identity = 99/142 (69.72%), Postives = 102/142 (71.83%), Query Frame = 1

		  
Query: 5   RIARPLRRR---------RIIQISALSTFDVKKLVVGPWGGTTGPPFGVHRPSRLFRRRT 64
           R ARP  RR         R      L   +  K   GP     G    ++R SR    RT
Sbjct: 231 RSARPFCRRYAPGLNWPGRASGAVTLKKLECSKQDFGPILLAFGIGVMINRDSR---GRT 290

Query: 65  TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGG 124
           TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGG
Sbjct: 291 TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGG 350

Query: 125 SMVARLKLKGIDGRAPPGVEPA 138
           SMVARLKLKGIDGRAPPGVEPA
Sbjct: 351 SMVARLKLKGIDGRAPPGVEPA 369

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BLAST of Spo19206.1 vs. NCBI nr
Match: gi|1009176457|ref|XP_015869441.1| (PREDICTED: uncharacterized protein LOC107406762 [Ziziphus jujuba])

HSP 1 Score: 167.2 bits (422), Expect = 2.100e-38
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 1

		  
Query: 53  RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLG 112
           RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV +RTPPAPYEKSKFLG
Sbjct: 602 RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAYRTPPAPYEKSKFLG 661

Query: 113 SGGSMVARLKLKGIDGRAPPGVEPAA 139
           SGGSMVARLKLKGIDGRAPPGVEPAA
Sbjct: 662 SGGSMVARLKLKGIDGRAPPGVEPAA 687

[Close]

BLAST of Spo19206.1 vs. NCBI nr
Match: gi|703137890|ref|XP_010106597.1| (hypothetical protein L484_002552 [Morus notabilis])

HSP 1 Score: 164.5 bits (415), Expect = 1.300e-37
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1

		  
Query: 53  RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLG 112
           RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSKFLG
Sbjct: 107 RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKFLG 166

Query: 113 SGGSMVARLKLKGIDGRAPPGVEPAA 139
           SGGSMVARLKLKGIDGRAPPGVEPAA
Sbjct: 167 SGGSMVARLKLKGIDGRAPPGVEPAA 192

[Close]

BLAST of Spo19206.1 vs. NCBI nr
Match: gi|686983426|gb|AIQ78384.1| (rRNA intron-encoded homing endonuclease, partial [Cenchrus americanus])

HSP 1 Score: 164.1 bits (414), Expect = 1.800e-37
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 1

		  
Query: 53  RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLG 112
           RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV +RTPPAPYEKSK LG
Sbjct: 2   RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAYRTPPAPYEKSKSLG 61

Query: 113 SGGSMVARLKLKGIDGRAPPGVEPAA 139
           SGGSMVARLKLKGIDGRAPPGVEPAA
Sbjct: 62  SGGSMVARLKLKGIDGRAPPGVEPAA 87

[Close]

BLAST of Spo19206.1 vs. UniProtKB/TrEMBL
Match: A0A072TTZ2_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_0052s0110 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.400e-40
Identity = 100/147 (68.03%), Postives = 104/147 (70.75%), Query Frame = 1

		  
Query: 25  DVKKLVVGPWGGTTGPP-----------------------------FGV----HRPSRLF 84
           +VKKLVVGPW G+ GPP                             FG+    +R SR  
Sbjct: 195 NVKKLVVGPWVGSIGPPMVCTGWLVPSAGDALLALIGRDSDPIVLAFGIGVMINRDSR-G 254

Query: 85  RRRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFL 139
             RTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSK L
Sbjct: 255 HSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKSL 314

[Close]

BLAST of Spo19206.1 vs. UniProtKB/TrEMBL
Match: M1DUP9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400044276 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 6.500e-39
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 1

		  
Query: 53  RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLG 112
           RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTPPAPYEKSKFLG
Sbjct: 100 RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPPAPYEKSKFLG 159

Query: 113 SGGSMVARLKLKGIDGRAPPGVEPAA 139
           SGGSMVARLKLKGIDGRAPPGVEPAA
Sbjct: 160 SGGSMVARLKLKGIDGRAPPGVEPAA 185

[Close]

BLAST of Spo19206.1 vs. UniProtKB/TrEMBL
Match: M1D925_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400034813 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 6.500e-39
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 1

		  
Query: 53  RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLG 112
           RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTPPAPYEKSKFLG
Sbjct: 236 RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPPAPYEKSKFLG 295

Query: 113 SGGSMVARLKLKGIDGRAPPGVEPAA 139
           SGGSMVARLKLKGIDGRAPPGVEPAA
Sbjct: 296 SGGSMVARLKLKGIDGRAPPGVEPAA 321

[Close]

BLAST of Spo19206.1 vs. UniProtKB/TrEMBL
Match: M1DMU8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400041108 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 6.500e-39
Identity = 86/92 (93.48%), Postives = 87/92 (94.57%), Query Frame = 1

		  
Query: 47  PSRLFRRRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYE 106
           P R +  RTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTPPAPYE
Sbjct: 48  PHRPWLVRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPPAPYE 107

Query: 107 KSKFLGSGGSMVARLKLKGIDGRAPPGVEPAA 139
           KSKFLGSGGSMVARLKLKGIDGRAPPGVEPAA
Sbjct: 108 KSKFLGSGGSMVARLKLKGIDGRAPPGVEPAA 139

[Close]

BLAST of Spo19206.1 vs. UniProtKB/TrEMBL
Match: W9SJ11_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002552 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 9.400e-38
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1

		  
Query: 53  RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLG 112
           RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSKFLG
Sbjct: 107 RRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKFLG 166

Query: 113 SGGSMVARLKLKGIDGRAPPGVEPAA 139
           SGGSMVARLKLKGIDGRAPPGVEPAA
Sbjct: 167 SGGSMVARLKLKGIDGRAPPGVEPAA 192

The following BLAST results are available for this feature:

BLAST of Spo19206.1 vs. NCBI nr
BLAST of Spo19206.1 vs. UniProtKB/TrEMBL
BLAST of Spo19206.1 vs. ExPASy Swiss-Prot
BLAST of Spo19206.1 vs. TAIR (Arabidopsis)

BLAST of Spo19206.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|922327215\|ref\|XP_013443000.1\|	4.9e-40	68.0	rRNA intron-encoded homing end...	[more]
gi\|694380941\|ref\|XP_009366572.1\|	1.2e-38	69.7	PREDICTED: uncharacterized pro...	[more]
gi\|1009176457\|ref\|XP_015869441.1\|	2.1e-38	97.6	PREDICTED: uncharacterized pro...	[more]
gi\|703137890\|ref\|XP_010106597.1\|	1.3e-37	97.6	hypothetical protein L484_0025...	[more]
gi\|686983426\|gb\|AIQ78384.1\|	1.8e-37	96.5	rRNA intron-encoded homing end...	[more]

BLAST of Spo19206.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A072TTZ2_MEDTR	3.4e-40	68.0	Uncharacterized protein OS=Med...	[more]
M1DUP9_SOLTU	6.5e-39	98.8	Uncharacterized protein OS=Sol...	[more]
M1D925_SOLTU	6.5e-39	98.8	Uncharacterized protein OS=Sol...	[more]
M1DMU8_SOLTU	6.5e-39	93.4	Uncharacterized protein OS=Sol...	[more]
W9SJ11_9ROSA	9.4e-38	97.6	Uncharacterized protein OS=Mor...	[more]

BLAST of Spo19206.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo19206.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34410	FAMILY NOT NAMED	coord: 51..138 score: 4.6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006506	GPI anchor biosynthetic process
biological_process	GO:0043248	proteasome assembly
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0043069	negative regulation of programmed cell death
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0010310	regulation of hydrogen peroxide metabolic process
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0010337	regulation of salicylic acid metabolic process
biological_process	GO:0006810	transport
biological_process	GO:0002679	respiratory burst involved in defense response
biological_process	GO:0010200	response to chitin
biological_process	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process	GO:0006850	mitochondrial pyruvate transmembrane transport
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0016049	cell growth
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0030001	metal ion transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0006508	proteolysis
biological_process	GO:0080167	response to karrikin
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0006301	postreplication repair
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0006412	translation
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0009987	cellular process
biological_process	GO:0016998	cell wall macromolecule catabolic process
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0007030	Golgi organization
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006396	RNA processing
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0007033	vacuole organization
biological_process	GO:0080090	regulation of primary metabolic process
biological_process	GO:0060255	regulation of macromolecule metabolic process
biological_process	GO:0031323	regulation of cellular metabolic process
biological_process	GO:0015031	protein transport
biological_process	GO:0009657	plastid organization
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0044085	cellular component biogenesis
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0001510	RNA methylation
biological_process	GO:0052542	defense response by callose deposition
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006857	oligopeptide transport
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006465	signal peptide processing
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0000338	protein deneddylation
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0048829	root cap development
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009408	response to heat
biological_process	GO:0006499	N-terminal protein myristoylation
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0051604	protein maturation
biological_process	GO:0090351	seedling development
biological_process	GO:0051510	regulation of unidimensional cell growth
biological_process	GO:0060968	regulation of gene silencing
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0009933	meristem structural organization
biological_process	GO:0035266	meristem growth
biological_process	GO:0006544	glycine metabolic process
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:0009853	photorespiration
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006364	rRNA processing
biological_process	GO:0044070	regulation of anion transport
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009744	response to sucrose
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006571	tyrosine biosynthetic process
biological_process	GO:0000162	tryptophan biosynthetic process
biological_process	GO:0033587	shikimate biosynthetic process
biological_process	GO:0009094	L-phenylalanine biosynthetic process
biological_process	GO:0009423	chorismate biosynthetic process
biological_process	GO:0009407	toxin catabolic process
biological_process	GO:0006563	L-serine metabolic process
biological_process	GO:0009089	lysine biosynthetic process via diaminopimelate
biological_process	GO:0009088	threonine biosynthetic process
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0009932	cell tip growth
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0006605	protein targeting
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006007	glucose catabolic process
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0006897	endocytosis
biological_process	GO:0016558	protein import into peroxisome matrix
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0016123	xanthophyll biosynthetic process
biological_process	GO:0016120	carotene biosynthetic process
biological_process	GO:0007292	female gamete generation
biological_process	GO:0048232	male gamete generation
biological_process	GO:0010078	maintenance of root meristem identity
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0010311	lateral root formation
biological_process	GO:0045087	innate immune response
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0009790	embryo development
biological_process	GO:0051301	cell division
biological_process	GO:0042023	DNA endoreduplication
biological_process	GO:0043631	RNA polyadenylation
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005839	proteasome core complex
cellular_component	GO:0009707	chloroplast outer membrane
cellular_component	GO:0030659	cytoplasmic vesicle membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0017177	glucosidase II complex
cellular_component	GO:0005768	endosome
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005741	mitochondrial outer membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009505	plant-type cell wall
cellular_component	GO:0016020	membrane
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000502	proteasome complex
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0033179	proton-transporting V-type ATPase, V0 domain
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005829	cytosol
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0009524	phragmoplast
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0010287	plastoglobule
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0019773	proteasome core complex, alpha-subunit complex
cellular_component	GO:0008540	proteasome regulatory particle, base subcomplex
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0032991	protein-containing complex
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005749	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0035145	exon-exon junction complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005759	mitochondrial matrix
cellular_component	GO:0016604	nuclear body
molecular_function	GO:0019706	protein-cysteine S-palmitoyltransferase activity
molecular_function	GO:0000035	acyl binding
molecular_function	GO:0004652	polynucleotide adenylyltransferase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0016758	transferase activity, transferring hexosyl groups
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003856	3-dehydroquinate synthase activity
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0004072	aspartate kinase activity
molecular_function	GO:0016597	amino acid binding
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003950	NAD+ ADP-ribosyltransferase activity
molecular_function	GO:0005351	carbohydrate:proton symporter activity
molecular_function	GO:0045435	lycopene epsilon cyclase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008568	microtubule-severing ATPase activity
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0004298	threonine-type endopeptidase activity
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0008236	serine-type peptidase activity
molecular_function	GO:0000062	fatty-acyl-CoA binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0004601	peroxidase activity
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0051920	peroxiredoxin activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005215	transporter activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity
molecular_function	GO:0035673	oligopeptide transmembrane transporter activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0010181	FMN binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0047617	acyl-CoA hydrolase activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0070330	aromatase activity
molecular_function	GO:0004683	calmodulin-dependent protein kinase activity
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0004575	sucrose alpha-glucosidase activity
molecular_function	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0008308	voltage-gated anion channel activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo14687	0.95	Barchart \| Table
Spo24625	0.95	Barchart \| Table
Spo12253	0.95	Barchart \| Table
Spo00898	0.95	Barchart \| Table
Spo00936	0.95	Barchart \| Table
Spo05029	0.95	Barchart \| Table
Spo03618	0.93	Barchart \| Table
Spo14194	0.89	Barchart \| Table
Spo13459	0.78	Barchart \| Table
Spo14441	0.76	Barchart \| Table
Spo12202	0.75	Barchart \| Table
Spo20071	0.74	Barchart \| Table
Spo06962	0.74	Barchart \| Table
Spo05731	0.73	Barchart \| Table
Spo14008	0.73	Barchart \| Table
Spo12942	0.73	Barchart \| Table
Spo05990	0.73	Barchart \| Table
Spo27102	0.73	Barchart \| Table
Spo04923	0.73	Barchart \| Table
Spo09674	0.73	Barchart \| Table
Spo01914	0.72	Barchart \| Table
Spo21691	0.72	Barchart \| Table
Spo20677	0.72	Barchart \| Table
Spo02085	0.71	Barchart \| Table
Spo03608	0.71	Barchart \| Table
Spo11733	0.71	Barchart \| Table
Spo12663	0.71	Barchart \| Table
Spo01929	0.70	Barchart \| Table
Spo19874	0.70	Barchart \| Table
Spo12128	0.70	Barchart \| Table
Spo14849	0.70	Barchart \| Table
Spo24857	0.70	Barchart \| Table
Spo18575	0.70	Barchart \| Table
Spo22760	0.70	Barchart \| Table
Spo02731	0.69	Barchart \| Table
Spo00615	0.69	Barchart \| Table
Spo12176	0.69	Barchart \| Table
Spo06294	0.69	Barchart \| Table
Spo00175	0.69	Barchart \| Table
Spo23148	0.69	Barchart \| Table
Spo01261	0.69	Barchart \| Table
Spo13029	0.69	Barchart \| Table
Spo17371	0.68	Barchart \| Table
Spo18502	0.68	Barchart \| Table
Spo08540	0.68	Barchart \| Table
Spo01204	0.68	Barchart \| Table
Spo06030	0.68	Barchart \| Table
Spo02594	0.68	Barchart \| Table
Spo13956	0.68	Barchart \| Table
Spo06681	0.68	Barchart \| Table
Spo16821	0.68	Barchart \| Table
Spo06679	0.67	Barchart \| Table
Spo04254	0.67	Barchart \| Table
Spo08969	0.67	Barchart \| Table
Spo15603	0.67	Barchart \| Table
Spo08572	0.67	Barchart \| Table
Spo02107	0.67	Barchart \| Table
Spo20957	0.67	Barchart \| Table
Spo06805	0.67	Barchart \| Table
Spo19751	0.67	Barchart \| Table
Spo18459	0.67	Barchart \| Table
Spo23908	0.67	Barchart \| Table
Spo16945	0.67	Barchart \| Table
Spo18451	0.67	Barchart \| Table
Spo03306	0.67	Barchart \| Table
Spo15420	0.67	Barchart \| Table
Spo25230	0.67	Barchart \| Table
Spo06199	0.67	Barchart \| Table
Spo09803	0.67	Barchart \| Table
Spo03561	0.67	Barchart \| Table
Spo05228	0.67	Barchart \| Table
Spo05531	0.66	Barchart \| Table
Spo09015	0.66	Barchart \| Table
Spo03251	0.66	Barchart \| Table
Spo10222	0.66	Barchart \| Table
Spo11346	0.66	Barchart \| Table
Spo26745	0.66	Barchart \| Table
Spo12201	0.66	Barchart \| Table
Spo03196	0.66	Barchart \| Table
Spo01858	0.66	Barchart \| Table
Spo15517	0.66	Barchart \| Table
Spo17372	0.66	Barchart \| Table
Spo17724	0.66	Barchart \| Table
Spo01231	0.66	Barchart \| Table
Spo01097	0.66	Barchart \| Table
Spo00858	0.66	Barchart \| Table
Spo18185	0.65	Barchart \| Table
Spo23549	0.65	Barchart \| Table
Spo23710	0.65	Barchart \| Table
Spo14438	0.65	Barchart \| Table
Spo24309	0.65	Barchart \| Table
Spo05535	0.65	Barchart \| Table
Spo13579	0.65	Barchart \| Table
Spo24985	0.65	Barchart \| Table
Spo06729	0.65	Barchart \| Table
Spo06314	0.65	Barchart \| Table
Spo19558	0.65	Barchart \| Table