Spo19330 (gene) | SpinachBase

Overview


Name	Spo19330
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	nuclear factor Y, subunit B2
Location	chr6 : 18323669 .. 18326655 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTGATTATCCTTCATTAATCATTACAGAACAATTGAGAATTGACTGAGTGGAAAAAAGGGAGTTAGAGGAAGAAAAAAAGGAATGGGGAAGGAAAAAGCGACGGCGGTGGCGACGGAGGCAGAGGAGTTGCCAAAGACGATCGTCCGGCGAGTCGTCAAAGAGAAGCTTTCTCAGATTTCCACCGACGGCGGTGATGTCACCCTTCACAAGGAAGCTCTCATTGCCTTCTCCGAAAGCGCTCGCATCTTCATCCACTATCTCTCCGCCACGTATTCCCTCTCTCTCTTTTTCTCTTTAATTAATTATAATACCAGATTTCCTTCATTTTCATCGCTTTAATTGTTTAATTACTCGCTATTGGTATTGCTGGTTGAAATGTTAGGGTTTTGAATTTTCTGGAAAAAAAAAAATTGGAAATTGCTTCACTTATTAGCTCCATTTCTGCTTTCAGGGAGATGCATTGTTTAATTACTTTTTGATTATGTAATAATATGTTATCGAATTACTTGCACTTTTATCCTGCTTAATAATTTTATATGCAAAACAATTCAAAAATTTTATGAAATTGACCTAGATTTTTTGTGGTGTAGCTTCACCTAGTTTTGGTTACATTTAGTAATCATGTAGATTAGTTGTCGGGTCGTCTGGACGTTTGTGGTTTTTTTGGGTTGTTATTACTTATTAAATCAAGTGTAAGTTGTCAAATCCTTGTGGGAATTGTAATCCAAAGAGTCACTTACAAAACTTGTGAATGGGTCTTTTTTTCTTTTCCATTAGCATTATTTTCTTGTAATTTTGATACGGAGTACATATACTATCTTAGTCAGAAGTAAGCCCTGGGTTTTGAGTACATAGCTCATGCCTCATGGATTCGTCAATGTAATTGTGATTGTAAACCCGTCCTTAGAGAGAATTGGAGAGCAGTCCTTGTTGAAACACTTCCCTGTATATGTCCCTTGGACTAAGAATTTGATAACTTTGCTGATAGATAATTTGATATGAATTTGTGTAGGGCGCATGACATATGCAATGACTCAAATAGACAAATCATAAATGCTGAAGATGTGTTGAATGCACTAGAGGAAGTAGAGTTTTCCGAGTTTGTTGAACCACTCAGGGCTGCCCTTGATGGTTAGTGGCTTTTTTTTCTTTCAGGTTACTGCTTTCGGATGCATTTTTCCCCTTTTCAATTGAGTATTTCTCATGTTTGAATATGCCTTTTACTTTGGAATGATTTCCATCTTTGCTCTGCACTTCAAATACGGGTTTTCAAGGAATCTCTAAAGTGTTGATGCAGATTGGCAAAAATAAGTAGCTTGTCCATGTATGAGACAGTTATTTAACAGATAATATGAATTATGGGAATAAATACCAATATGCTTTATTATCTTTGCAGGCGGACAAAATAAACTAGAACTATAATGATAAGCAGTCAAATTTATGATAAGCTCTAAAGTGTTACTCTATTCTCTTGTGTTTTCCGCATGTGTAGACCTTGTCAGAGTTATCACTGGATTCACTGACATGTATGTCCTGGTCCTGTGAAGACTTTTCAGAATCTCTCTGGAAATGAAATTTAGGAGTCGAATAGTGCTTAAAATTAAGTACTTTTGCTGTTGCTGTTCTGTGCTTTGAGGCTCCTCAAGTGTTTATCTTAGGTTATTATTGAATTACTTGATACCTATGTATGACGAGCTTTGCGCTTTTATGAGCTTCAACTGATTCAATTTGGATGTTTAGTATTCCACTCCAAAGTAAACCAAACATTATGAATGGGATATATAATCCATTCCAAGAGTAAACCAAACAACTTCAAACTGGTGTGGGAATGTGAACCCATACCCCTATGGTATGAGGTTCCGTACCAATCCATTCCAATTTAATGAACCAAACGGCCCCTAAGATCTGAATGAACAATATGAATGAAGATCTGTAACAGCCCTGGATTAACTGTATCTTAGATTAAATTGTTAACAGTGTGAGGGCGACATTTACCCCTCTTGTCCCAAGCTATAGATTGTTACTCTGTATCTCTATCTGCTTTTATGCGGGACACAGGATATAGTCATATAGAAGGGTCTATTAGCATTTAGATATATAATAACATGCATAATGTGGATATACTAACCAACTTAATTTCAGAATTTAAGAAAAAGGCTGCTGGAAAGAGAGCAGGGTCAGCAAAGGCAAAAGAAGCAAGCAAGAAGAGGAAAACAGATGAAGAGACAGCTACAAAAAATGTCAAAGCTGAAGTGACAGCCACGGAAAATGGCGAAGAGGAAGATACAGCTACAGAAAATGGCAAAGATGAAGAGACAGCGACAGAAAATGGCGAAGAGGAAGATACAGCTACAGAAAATGGCAAAGATGAAGAGACAGCCACGGAAAATGGCGAAGAGGAAGATACAGGTACAGAAAATGGCGAAGAGGAAGAGACAGCCACGGAAAATGGCGAAGAGGAAGAGACAGCCACGGAAAATGGCGAAGAGGAAGATACAGCTACGGAAAATGGCAAGGAGGAAGAGAATGAAGATGAAGAAGATGAGGAGGAAGAAGAAAGTGAAAACAATGATGATAATGATGATGATGATGATTCTCCTGATAGCTAAGTGTAAAATCTGTTACCTATAGCACTTTATATCTAGCTGACCTTCAGGCTAACACATGGTGTAACATAAACAAGGTGGGCATATAGGTGGAGATGACTTGCATGTAATGGCTCAATGTTTCTTCCTGTATAACTACGGATACTAGGCTAATGGGAACATATAAAGTGCATGGTTTTTCAAGGGGAAGTTATTGCTGAAATTCAATTTTCATTGTTGAATGAGTGAGATCTACAGGTAGTCAAGCACCCATGTTGTGTACAGATGTTAAAATTAATACAGCCATCAGGAGCTGGCCAGTGATGATAATTGGAAAGGATGATTCTCAACAACACTGAGTGTAATTATGGTCTGTAGCTGAAAAATGCGAAGTATCAG

mRNA sequence

AACTGATTATCCTTCATTAATCATTACAGAACAATTGAGAATTGACTGAGTGGAAAAAAGGGAGTTAGAGGAAGAAAAAAAGGAATGGGGAAGGAAAAAGCGACGGCGGTGGCGACGGAGGCAGAGGAGTTGCCAAAGACGATCGTCCGGCGAGTCGTCAAAGAGAAGCTTTCTCAGATTTCCACCGACGGCGGTGATGTCACCCTTCACAAGGAAGCTCTCATTGCCTTCTCCGAAAGCGCTCGCATCTTCATCCACTATCTCTCCGCCACGGCGCATGACATATGCAATGACTCAAATAGACAAATCATAAATGCTGAAGATGTGTTGAATGCACTAGAGGAAGTAGAGTTTTCCGAGTTTGTTGAACCACTCAGGGCTGCCCTTGATGAATTTAAGAAAAAGGCTGCTGGAAAGAGAGCAGGGTCAGCAAAGGCAAAAGAAGCAAGCAAGAAGAGGAAAACAGATGAAGAGACAGCTACAAAAAATGTCAAAGCTGAAGTGACAGCCACGGAAAATGGCGAAGAGGAAGATACAGCTACAGAAAATGGCAAAGATGAAGAGACAGCGACAGAAAATGGCGAAGAGGAAGATACAGCTACAGAAAATGGCAAAGATGAAGAGACAGCCACGGAAAATGGCGAAGAGGAAGATACAGGTACAGAAAATGGCGAAGAGGAAGAGACAGCCACGGAAAATGGCGAAGAGGAAGAGACAGCCACGGAAAATGGCGAAGAGGAAGATACAGCTACGGAAAATGGCAAGGAGGAAGAGAATGAAGATGAAGAAGATGAGGAGGAAGAAGAAAGTGAAAACAATGATGATAATGATGATGATGATGATTCTCCTGATAGCTAAGTGTAAAATCTGTTACCTATAGCACTTTATATCTAGCTGACCTTCAGGCTAACACATGGTGTAACATAAACAAGGTGGGCATATAGGTGGAGATGACTTGCATGTAATGGCTCAATGTTTCTTCCTGTATAACTACGGATACTAGGCTAATGGGAACATATAAAGTGCATGGTTTTTCAAGGGGAAGTTATTGCTGAAATTCAATTTTCATTGTTGAATGAGTGAGATCTACAGGTAGTCAAGCACCCATGTTGTGTACAGATGTTAAAATTAATACAGCCATCAGGAGCTGGCCAGTGATGATAATTGGAAAGGATGATTCTCAACAACACTGAGTGTAATTATGGTCTGTAGCTGAAAAATGCGAAGTATCAG

Coding sequence (CDS)

ATGGGGAAGGAAAAAGCGACGGCGGTGGCGACGGAGGCAGAGGAGTTGCCAAAGACGATCGTCCGGCGAGTCGTCAAAGAGAAGCTTTCTCAGATTTCCACCGACGGCGGTGATGTCACCCTTCACAAGGAAGCTCTCATTGCCTTCTCCGAAAGCGCTCGCATCTTCATCCACTATCTCTCCGCCACGGCGCATGACATATGCAATGACTCAAATAGACAAATCATAAATGCTGAAGATGTGTTGAATGCACTAGAGGAAGTAGAGTTTTCCGAGTTTGTTGAACCACTCAGGGCTGCCCTTGATGAATTTAAGAAAAAGGCTGCTGGAAAGAGAGCAGGGTCAGCAAAGGCAAAAGAAGCAAGCAAGAAGAGGAAAACAGATGAAGAGACAGCTACAAAAAATGTCAAAGCTGAAGTGACAGCCACGGAAAATGGCGAAGAGGAAGATACAGCTACAGAAAATGGCAAAGATGAAGAGACAGCGACAGAAAATGGCGAAGAGGAAGATACAGCTACAGAAAATGGCAAAGATGAAGAGACAGCCACGGAAAATGGCGAAGAGGAAGATACAGGTACAGAAAATGGCGAAGAGGAAGAGACAGCCACGGAAAATGGCGAAGAGGAAGAGACAGCCACGGAAAATGGCGAAGAGGAAGATACAGCTACGGAAAATGGCAAGGAGGAAGAGAATGAAGATGAAGAAGATGAGGAGGAAGAAGAAAGTGAAAACAATGATGATAATGATGATGATGATGATTCTCCTGATAGCTAA

Protein sequence

MGKEKATAVATEAEELPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYLSATAHDICNDSNRQIINAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAKEASKKRKTDEETATKNVKAEVTATENGEEEDTATENGKDEETATENGEEEDTATENGKDEETATENGEEEDTGTENGEEEETATENGEEEETATENGEEEDTATENGKEEENEDEEDEEEEESENNDDNDDDDDSPDS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo19330.1	Spo19330.1	mRNA

Homology

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BLAST of Spo19330.1 vs. NCBI nr
Match: gi|902196850|gb|KNA13236.1| (hypothetical protein SOVF_118630 [Spinacia oleracea])

HSP 1 Score: 411.4 bits (1056), Expect = 1.200e-111
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 1


		  
Query: 1   MGKEKATAVATEAEELPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYL 60
           MGKEKATAVATEAEELPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYL
Sbjct: 1   MGKEKATAVATEAEELPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYL 60

Query: 61  SATAHDICNDSNRQIINAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAKE 120
           SATAHDICNDSNRQIINAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAKE
Sbjct: 61  SATAHDICNDSNRQIINAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAKE 120

Query: 121 ASKKRKTDEETATKNVKAEVTATENGEEEDTATENGKDEETATENGEEEDTATENGKDEE 180
           ASKKRKTDEETATKNVKAEVTATENGEEEDTATENGKDEETATENGEEEDTATENGKDEE
Sbjct: 121 ASKKRKTDEETATKNVKAEVTATENGEEEDTATENGKDEETATENGEEEDTATENGKDEE 180

Query: 181 TATENGEEEDTGTENGEEEETATENGEEEETATENGEEEDTATENGKEEENEDEEDEEEE 240
           TATENGEEEDTGTENGEEEETATENGEEEETATENGEEEDTATENGKEEENEDEEDEEEE
Sbjct: 181 TATENGEEEDTGTENGEEEETATENGEEEETATENGEEEDTATENGKEEENEDEEDEEEE 240

Query: 241 ESENNDDNDDDDDSPDS 258
           ESENNDDNDDDDDSPDS
Sbjct: 241 ESENNDDNDDDDDSPDS 257

[Close]

BLAST of Spo19330.1 vs. NCBI nr
Match: gi|731349458|ref|XP_010686001.1| (PREDICTED: DNA polymerase epsilon subunit 3 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 208.0 bits (528), Expect = 2.000e-50
Identity = 123/165 (74.55%), Postives = 138/165 (83.64%), Query Frame = 1


		  
Query: 1   MGKEKATAVAT----EAEELPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIF 60
           M KEK+ A AT    EAEELPKTIVRRVVKEKLS+IS DGGDVTLHKEAL+AFSESARIF
Sbjct: 1   MAKEKSPATATTTAMEAEELPKTIVRRVVKEKLSKISGDGGDVTLHKEALLAFSESARIF 60

Query: 61  IHYLSATAHDICNDSNRQIINAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSA 120
           IHYLSATAHD+CNDSNRQIINA+DVL ALEE+EFSEFVEPLR +L+EF+KKAAGKRAG+A
Sbjct: 61  IHYLSATAHDVCNDSNRQIINADDVLTALEEIEFSEFVEPLRGSLEEFRKKAAGKRAGTA 120

Query: 121 KAKEASKKRKTDEETATKNVKAE--VTATENGEEEDTATENGKDE 160
           KAKEA+KKRK DEETA  N K E  V    N +E++     GKD+
Sbjct: 121 KAKEANKKRKADEETAKGNDKDEDKVDNEVNEDEDEEQASEGKDD 165

[Close]

BLAST of Spo19330.1 vs. NCBI nr
Match: gi|731349456|ref|XP_010686000.1| (PREDICTED: DNA polymerase epsilon subunit 3 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 194.5 bits (493), Expect = 2.300e-46
Identity = 132/212 (62.26%), Postives = 157/212 (74.06%), Query Frame = 1


		  
Query: 1   MGKEKATAVAT----EAEELPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIF 60
           M KEK+ A AT    EAEELPKTIVRRVVKEKLS+IS DGGDVTLHKEAL+AFSESARIF
Sbjct: 1   MAKEKSPATATTTAMEAEELPKTIVRRVVKEKLSKISGDGGDVTLHKEALLAFSESARIF 60

Query: 61  IHYLSATAHDICNDSNRQIINAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSA 120
           IHYLSATAHD+CNDSNRQIINA+DVL ALEE+EFSEFVEPLR +L+EF+KKAAGKRAG+A
Sbjct: 61  IHYLSATAHDVCNDSNRQIINADDVLTALEEIEFSEFVEPLRGSLEEFRKKAAGKRAGTA 120

Query: 121 KAKEASKKRKTDEETATKNVKAEVTATENGEEEDTATENGKDEETATENGEEEDTATENG 180
           KAKEA+KKRK DEETA  N K E       ++ D     G+D+     + E+ED      
Sbjct: 121 KAKEANKKRKADEETAKGNDKDE-------DKVDNEVNEGEDK----VDDEDEDKVDNEV 180

Query: 181 KDEETATENGEEEDTGTENGEEEETATENGEE 209
            ++E   +N   ED   +  E+EE A+E  ++
Sbjct: 181 DEDEDKVDNEANEDEDEDEDEDEEQASEGKDD 201

[Close]

BLAST of Spo19330.1 vs. NCBI nr
Match: gi|388510360|gb|AFK43246.1| (unknown [Lotus japonicus])

HSP 1 Score: 155.2 bits (391), Expect = 1.500e-34
Identity = 102/189 (53.97%), Postives = 141/189 (74.60%), Query Frame = 1


		  
Query: 12  EAEELPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYLSATAHDICNDS 71
           E ++LPKTIVRRVVK+KLS+ S DG D+++HK+AL+AFSESA+IFIHY+SATA+DIC +S
Sbjct: 3   EPDDLPKTIVRRVVKDKLSRCSEDG-DISIHKDALLAFSESAKIFIHYISATANDICKES 62

Query: 72  NRQIINAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAK--EASKKRKTDE 131
            RQIINAEDV  ALEE EF+EF+ PLRA+L+EF+KK AGK+A ++K K  EA KKRK + 
Sbjct: 63  RRQIINAEDVFKALEETEFAEFIRPLRASLEEFRKKNAGKKAAASKYKESEAKKKRKLEG 122

Query: 132 ETATKNVKAEVTATENGEEEDTATENGKDEETATENGEEEDTATENGKDEETATENGEEE 191
           E++ K       A+  GE ED A++ G  E+  ++ G+ ED A++ G+ E+ A++ GE E
Sbjct: 123 ESSNKG-----EASGKGEAEDEASDKGDAEDEVSDKGDSEDEASDKGEAEDEASDKGEAE 182

Query: 192 DTGTENGEE 199
           D+     +E
Sbjct: 183 DSEINERDE 185

[Close]

BLAST of Spo19330.1 vs. NCBI nr
Match: gi|719974503|ref|XP_010245113.1| (PREDICTED: DNA polymerase epsilon subunit 3 [Nelumbo nucifera])

HSP 1 Score: 154.8 bits (390), Expect = 2.000e-34
Identity = 92/151 (60.93%), Postives = 119/151 (78.81%), Query Frame = 1


		  
Query: 10  ATEAEELPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYLSATAHDICN 69
           A+E EELPK IVRRVVK+KLS+ S+D  ++ +HK+AL+AFSESARIFIHYLSATA+DIC 
Sbjct: 5   ASEVEELPKAIVRRVVKDKLSR-SSDQDEINVHKDALLAFSESARIFIHYLSATANDICR 64

Query: 70  DSNRQIINAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAKEASKKRKTDE 129
           +S RQ INA+DV  ALEE+EF EF+ PL+A+LD F++K AGK+A +AKAKEA+KKRK +E
Sbjct: 65  ESKRQTINADDVFKALEEIEFPEFIGPLQASLDVFRRKNAGKKAVTAKAKEANKKRKMEE 124

Query: 130 ETATKNVKAEVTATENGEEEDTATENGKDEE 161
             A +N   E    ENG+EED   E+G  ++
Sbjct: 125 AAAAQNGNEE--CKENGKEEDNEDEDGSPDK 152

[Close]

BLAST of Spo19330.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R139_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_118630 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 8.200e-112
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 1


		  
Query: 1   MGKEKATAVATEAEELPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYL 60
           MGKEKATAVATEAEELPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYL
Sbjct: 1   MGKEKATAVATEAEELPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYL 60

Query: 61  SATAHDICNDSNRQIINAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAKE 120
           SATAHDICNDSNRQIINAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAKE
Sbjct: 61  SATAHDICNDSNRQIINAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAKE 120

Query: 121 ASKKRKTDEETATKNVKAEVTATENGEEEDTATENGKDEETATENGEEEDTATENGKDEE 180
           ASKKRKTDEETATKNVKAEVTATENGEEEDTATENGKDEETATENGEEEDTATENGKDEE
Sbjct: 121 ASKKRKTDEETATKNVKAEVTATENGEEEDTATENGKDEETATENGEEEDTATENGKDEE 180

Query: 181 TATENGEEEDTGTENGEEEETATENGEEEETATENGEEEDTATENGKEEENEDEEDEEEE 240
           TATENGEEEDTGTENGEEEETATENGEEEETATENGEEEDTATENGKEEENEDEEDEEEE
Sbjct: 181 TATENGEEEDTGTENGEEEETATENGEEEETATENGEEEDTATENGKEEENEDEEDEEEE 240

Query: 241 ESENNDDNDDDDDSPDS 258
           ESENNDDNDDDDDSPDS
Sbjct: 241 ESENNDDNDDDDDSPDS 257

[Close]

BLAST of Spo19330.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BV57_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g176050 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.600e-46
Identity = 132/212 (62.26%), Postives = 157/212 (74.06%), Query Frame = 1


		  
Query: 1   MGKEKATAVAT----EAEELPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIF 60
           M KEK+ A AT    EAEELPKTIVRRVVKEKLS+IS DGGDVTLHKEAL+AFSESARIF
Sbjct: 1   MAKEKSPATATTTAMEAEELPKTIVRRVVKEKLSKISGDGGDVTLHKEALLAFSESARIF 60

Query: 61  IHYLSATAHDICNDSNRQIINAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSA 120
           IHYLSATAHD+CNDSNRQIINA+DVL ALEE+EFSEFVEPLR +L+EF+KKAAGKRAG+A
Sbjct: 61  IHYLSATAHDVCNDSNRQIINADDVLTALEEIEFSEFVEPLRGSLEEFRKKAAGKRAGTA 120

Query: 121 KAKEASKKRKTDEETATKNVKAEVTATENGEEEDTATENGKDEETATENGEEEDTATENG 180
           KAKEA+KKRK DEETA  N K E       ++ D     G+D+     + E+ED      
Sbjct: 121 KAKEANKKRKADEETAKGNDKDE-------DKVDNEVNEGEDK----VDDEDEDKVDNEV 180

Query: 181 KDEETATENGEEEDTGTENGEEEETATENGEE 209
            ++E   +N   ED   +  E+EE A+E  ++
Sbjct: 181 DEDEDKVDNEANEDEDEDEDEDEEQASEGKDD 201

[Close]

BLAST of Spo19330.1 vs. UniProtKB/TrEMBL
Match: I3SSK4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.100e-34
Identity = 102/189 (53.97%), Postives = 141/189 (74.60%), Query Frame = 1


		  
Query: 12  EAEELPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYLSATAHDICNDS 71
           E ++LPKTIVRRVVK+KLS+ S DG D+++HK+AL+AFSESA+IFIHY+SATA+DIC +S
Sbjct: 3   EPDDLPKTIVRRVVKDKLSRCSEDG-DISIHKDALLAFSESAKIFIHYISATANDICKES 62

Query: 72  NRQIINAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAK--EASKKRKTDE 131
            RQIINAEDV  ALEE EF+EF+ PLRA+L+EF+KK AGK+A ++K K  EA KKRK + 
Sbjct: 63  RRQIINAEDVFKALEETEFAEFIRPLRASLEEFRKKNAGKKAAASKYKESEAKKKRKLEG 122

Query: 132 ETATKNVKAEVTATENGEEEDTATENGKDEETATENGEEEDTATENGKDEETATENGEEE 191
           E++ K       A+  GE ED A++ G  E+  ++ G+ ED A++ G+ E+ A++ GE E
Sbjct: 123 ESSNKG-----EASGKGEAEDEASDKGDAEDEVSDKGDSEDEASDKGEAEDEASDKGEAE 182

Query: 192 DTGTENGEE 199
           D+     +E
Sbjct: 183 DSEINERDE 185

[Close]

BLAST of Spo19330.1 vs. UniProtKB/TrEMBL
Match: A0A068UGY2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023950001 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.100e-34
Identity = 91/145 (62.76%), Postives = 119/145 (82.07%), Query Frame = 1


		  
Query: 10  ATEAEELPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYLSATAHDICN 69
           A E EELPKTIVRR+VK+KLSQ+S +  ++T+ +EAL AFSES RIFIHYL+ATA+DIC 
Sbjct: 27  AGELEELPKTIVRRLVKDKLSQLSAES-EITVFREALQAFSESGRIFIHYLTATANDICK 86

Query: 70  DSNRQIINAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAKEASKKRKTDE 129
           +SNRQIINAEDVL ALEE++F EFV+PLRA+L+EF+++ AGKR+GS+KAKEA +K K  +
Sbjct: 87  ESNRQIINAEDVLKALEEIDFPEFVQPLRASLEEFRQRNAGKRSGSSKAKEADRKGKR-K 146

Query: 130 ETATKNVKAEVTATENGEEEDTATE 155
           E +T  V+ E  AT++ E ED A +
Sbjct: 147 EPSTAEVEDEQDATKSDESEDGADD 169

[Close]

BLAST of Spo19330.1 vs. UniProtKB/TrEMBL
Match: A0A067KPT4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12819 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.900e-34
Identity = 88/148 (59.46%), Postives = 110/148 (74.32%), Query Frame = 1


		  
Query: 1   MGKEKATAVATEAEELPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYL 60
           M  E    V +EAEELPK IVRR+VK+KLSQ S DG D+ +HK+AL+AFSESARIFIHYL
Sbjct: 1   MESENVEKVVSEAEELPKAIVRRIVKDKLSQCSPDG-DLIVHKDALVAFSESARIFIHYL 60

Query: 61  SATAHDICNDSNRQIINAEDVLNALEEVEFSEFVEPLRAALDEFKKKAA---------GK 120
           SATA+DIC +S RQ INA+DVL ALEE+EF EFVEPL+A+L EFK+K A         GK
Sbjct: 61  SATANDICKESRRQTINADDVLKALEEIEFPEFVEPLKASLKEFKRKNAEKKAVASENGK 120

Query: 121 RAGSAKAKEASKKRKTDEETATKNVKAE 140
           +AG+++ +E  KKRK +EE + K    +
Sbjct: 121 KAGASETQEVKKKRKVEEEPSQKRASKQ 147

[Close]

BLAST of Spo19330.1 vs. ExPASy Swiss-Prot
Match: DPOE3_HUMAN (DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.400e-10
Identity = 52/150 (34.67%), Postives = 86/150 (57.33%), Query Frame = 1


		  
Query: 16  LPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYLSATAHDICNDSNRQI 75
           LP  ++ R++KE L     DG  V + KEA  A S +A +F+ Y ++ A++      R+ 
Sbjct: 10  LPNAVITRIIKEALP----DG--VNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 69

Query: 76  INAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAKEASKKRKTDEETATKN 135
           +NA DVL+A+EE+EF  FV PL+ AL+ ++++  GK+  S + K+  K +KTD E   K+
Sbjct: 70  LNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEAS-EQKKKDKDKKTDSEEQDKS 129

Query: 136 VKAEVTATENGEEEDTATENGKDEETATEN 166
                   +N E+E+   E  ++EE   +N
Sbjct: 130 -----RDEDNDEDEERLEEEEQNEEEEVDN 147

[Close]

BLAST of Spo19330.1 vs. ExPASy Swiss-Prot
Match: DPOE3_PONAB (DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.400e-10
Identity = 52/150 (34.67%), Postives = 86/150 (57.33%), Query Frame = 1


		  
Query: 16  LPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYLSATAHDICNDSNRQI 75
           LP  ++ R++KE L     DG  V + KEA  A S +A +F+ Y ++ A++      R+ 
Sbjct: 10  LPNAVITRIIKEALP----DG--VNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 69

Query: 76  INAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAKEASKKRKTDEETATKN 135
           +NA DVL+A+EE+EF  FV PL+ AL+ ++++  GK+  S + K+  K +KTD E   K+
Sbjct: 70  LNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEAS-EQKKKDKDKKTDSEEQDKS 129

Query: 136 VKAEVTATENGEEEDTATENGKDEETATEN 166
                   +N E+E+   E  ++EE   +N
Sbjct: 130 -----RDEDNDEDEERLEEEEQNEEEEVDN 147

[Close]

BLAST of Spo19330.1 vs. ExPASy Swiss-Prot
Match: DPOE3_BOVIN (DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.400e-10
Identity = 52/150 (34.67%), Postives = 86/150 (57.33%), Query Frame = 1


		  
Query: 16  LPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYLSATAHDICNDSNRQI 75
           LP  ++ R++KE L     DG  V + KEA  A S +A +F+ Y ++ A++      R+ 
Sbjct: 10  LPNAVITRIIKEALP----DG--VNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 69

Query: 76  INAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAKEASKKRKTDEETATKN 135
           +NA DVL+A+EE+EF  FV PL+ AL+ ++++  GK+  S + K+  K +KTD E   K+
Sbjct: 70  LNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEAS-EQKKKDKDKKTDSEEQDKS 129

Query: 136 VKAEVTATENGEEEDTATENGKDEETATEN 166
                   +N E+E+   E  ++EE   +N
Sbjct: 130 -----RDEDNDEDEERLEEEEQNEEEEVDN 147

[Close]

BLAST of Spo19330.1 vs. ExPASy Swiss-Prot
Match: DPOE3_MOUSE (DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.300e-9
Identity = 47/150 (31.33%), Postives = 86/150 (57.33%), Query Frame = 1


		  
Query: 16  LPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYLSATAHDICNDSNRQI 75
           LP  ++ R++KE L     DG  V + KEA  A S +A +F+ Y ++ A++      R+ 
Sbjct: 10  LPNAVITRIIKEALP----DG--VNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 69

Query: 76  INAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAKEASKKRKTDEETATKN 135
           +NA DVL+A+EE+EF  F+ PL+ AL+ +++   GK+  S + K+   K+ ++E+  ++ 
Sbjct: 70  LNASDVLSAMEEMEFQRFITPLKEALEAYRRDEKGKKEASEQKKKDKDKKDSEEQDKSRE 129

Query: 136 VKAEVTATENGEEEDTATENGKDEETATEN 166
           V+         E+E+   E+ ++EE   +N
Sbjct: 130 VEE--------EDEERLDEDDQNEEEEIDN 145

[Close]

BLAST of Spo19330.1 vs. ExPASy Swiss-Prot
Match: DPOE3_RAT (DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.700e-9
Identity = 48/150 (32.00%), Postives = 84/150 (56.00%), Query Frame = 1


		  
Query: 16  LPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYLSATAHDICNDSNRQI 75
           LP  ++ R++KE L     DG  V + KEA  A S +A +F+ Y ++ A++      R+ 
Sbjct: 10  LPNAVITRIIKEALP----DG--VNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 69

Query: 76  INAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAKEASKKRKTDEETATKN 135
           +NA DVL+A+EE+EF  FV PL+ AL+ ++++  GK+  S + K+   K+  +E+  ++ 
Sbjct: 70  LNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKDCEEQDKSRE 129

Query: 136 VKAEVTATENGEEEDTATENGKDEETATEN 166
                   E  E+E+   E  ++EE   +N
Sbjct: 130 --------EEDEDEERLDEEEQNEEEEVDN 145

[Close]

BLAST of Spo19330.1 vs. TAIR (Arabidopsis)
Match: AT2G27470.1 (nuclear factor Y, subunit B11)

HSP 1 Score: 116.7 bits (291), Expect = 2.100e-26
Identity = 120/255 (47.06%), Postives = 161/255 (63.14%), Query Frame = 1


		  
Query: 14  EELPKTIVRRVVKEKLSQISTDGGDVTLHKEALIAFSESARIFIHYLSATAHDICNDSNR 73
           +ELP  IVRRVVK+KLS+ S D  DV++HKEAL+AFSESARIFIHYLSATA+D C D+ R
Sbjct: 9   DELPLAIVRRVVKKKLSECSPDY-DVSIHKEALLAFSESARIFIHYLSATANDFCKDARR 68

Query: 74  QIINAEDVLNALEEVEFSEFVEPLRAALDEFKKKAAGKRAGSAKAK--EASKKRKTDEET 133
           Q + A+DV  ALEE++FSEF+EPL+++L++FKKK AGK+AG+A A         K+   T
Sbjct: 69  QTMKADDVFKALEEMDFSEFLEPLKSSLEDFKKKNAGKKAGAAAASYPAGGAALKSSSGT 128

Query: 134 A-----TKNVKAEVTATENGEEEDTATENGK--DEETATENGEEE---DTATENGKDEET 193
           A     TK  K E  +T+ G  +    E  K  DEET  +N EEE   D   ENG DEE 
Sbjct: 129 ASKPKETKKRKQEEPSTQKGARKSKIDEETKRNDEETENDNTEEENGNDEEDENGNDEED 188

Query: 194 ATENGEEEDTGTENGEEEETATENGEEEETATENGEEEDTATENGKEEENEDEEDEEEEE 253
             ++   E+ G +   ++E   ENG +EE   E  +EE++  ENG E E    ED   EE
Sbjct: 189 ENDDENTEENGNDEENDDENTEENGNDEENEKE--DEENSMEENGNESEESGNEDHSMEE 248

Query: 254 SEN--NDDNDDDDDS 255
           + +   +DN+++D S
Sbjct: 249 NGSGVGEDNENEDGS 260

The following BLAST results are available for this feature:

BLAST of Spo19330.1 vs. NCBI nr
BLAST of Spo19330.1 vs. UniProtKB/TrEMBL
BLAST of Spo19330.1 vs. ExPASy Swiss-Prot
BLAST of Spo19330.1 vs. TAIR (Arabidopsis)

BLAST of Spo19330.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902196850\|gb\|KNA13236.1\|	1.2e-111	100.	hypothetical protein SOVF_1186...	[more]
gi\|731349458\|ref\|XP_010686001.1\|	2.0e-50	74.5	PREDICTED: DNA polymerase epsi...	[more]
gi\|731349456\|ref\|XP_010686000.1\|	2.3e-46	62.2	PREDICTED: DNA polymerase epsi...	[more]
gi\|388510360\|gb\|AFK43246.1\|	1.5e-34	53.9	unknown [Lotus japonicus]	[more]
gi\|719974503\|ref\|XP_010245113.1\|	2.0e-34	60.9	PREDICTED: DNA polymerase epsi...	[more]

BLAST of Spo19330.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R139_SPIOL	8.2e-112	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BV57_BETVU	1.6e-46	62.2	Uncharacterized protein OS=Bet...	[more]
I3SSK4_LOTJA	1.1e-34	53.9	Uncharacterized protein OS=Lot...	[more]
A0A068UGY2_COFCA	3.1e-34	62.7	Uncharacterized protein OS=Cof...	[more]
A0A067KPT4_JATCU	6.9e-34	59.4	Uncharacterized protein OS=Jat...	[more]

BLAST of Spo19330.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
DPOE3_HUMAN	3.4e-10	34.6	DNA polymerase epsilon subunit...	[more]
DPOE3_PONAB	3.4e-10	34.6	DNA polymerase epsilon subunit...	[more]
DPOE3_BOVIN	3.4e-10	34.6	DNA polymerase epsilon subunit...	[more]
DPOE3_MOUSE	1.3e-9	31.3	DNA polymerase epsilon subunit...	[more]
DPOE3_RAT	1.7e-9	32.0	DNA polymerase epsilon subunit...	[more]

BLAST of Spo19330.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT2G27470.1	2.1e-26	47.0	nuclear factor Y, subunit B11	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 15..85 score: 2.
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 11..105 score: 1.2
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 17..107 score: 1.49
None	No IPR available	unknown	Coil	Coil	coord: 224..245 score: -coord: 68..88 scor
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 12..150 score: 2.1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo05512	0.65	Barchart \| Table