Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCTTTCTTGCCTATCTTCTTCCCCAAATTCACTGCTCAATTTTCAAAAATGTCTTCTTTCAATCCTTCTGCACCTCCCATGCCTAATTCATCATCATCTTATTCCTCTAATCCAAACAATTACAACCCTAATTACAGTAATAATTACAATCAAAATCACAATTACCCACCACCGGCCCAAATCAACCATGTGAGCCACCAATCATACTCTACTCCACCTTCTACTTCTAGTCTTCTTCCGTATGGCGGTGGAAACGGCGGCGGAGCATCAAGTTATGGGCACAATTACAACCCTTTTCCACCAGGAACTGACCCCGAAATCATTCGAAGCTTCCAGATGGTGGACCGCGATAACAGCGGTTTTATTGACGATTCTGAGCTTCAGAACGCTCTTTCTTCCGCTTACCACCGCTTCAATCTTAGCACTATTCGTCTACTCATCTTCCTATTCAAGAACCCGACTGAAAAGTCCCTCAAAATCCGTATGTATTTTACTTCCTTGCCCACCACGTGTTTGTTGTTTTGCCTCAATGAAATTTTGTGAACTGTTTGTTTTGGGTTAAAGTTTTCACCTTTTTCAAGTTCTTACTATGATTCCCTTCAAATTGTTTCATTTGGTTGTTATTTGTATTGTTTACTACTGCTGTTTGTTTTTGGCTGATTGGAAGTTCATTGACACAGGTCCAGGGGAATTTGCTGCATTGTGGAGTTGCCTGGGTCAATGGCGTGTAAGTTATTTTTAATTTCAATGCTTAATACATGTGATTTCCACCTGGGTTGCTTAAGGTGTTGGTGGACATATCCAACAAGTAACAAGTATGTAAAATATATATGGTGGCTTGGTTGAATAAGGGAAGTTGTTTCTCAATTTTTTTTTTTTTTTTTTGGAAAGAAAGCAAAGATATTGTATTACTCTATAAAAAATGTATTACAAACTAGCTATCACCTTAGCGAAGCCAAACCTTCTACGAAGGTACACAACCTCAAGGATATCCCTAACTGTACTAACAGGAAAAACTGAGCATAGTTACAAGGTCTAAACCAAGCTAAGTCAGCCTGCTTTACATTCTTCCCTATAATCTGTACAACTCTATTTTTATTAAAAATTGTATATCCTTTACTATTTTGCTGGACCGGTACACCTTAAGGTCTAGAGAGCACCGGTTCTTGTTTTCCATATGATATCACATTAGCAGCAATAGCAGCATCATACACCTTCCTCCTGAAACTGCCACCCTTCTAGTTTTTGTGGATCCAACCCATCAATTGTATAATGTCATTAGAACTCCTAGAGATGCCAAACTAACTCTTAATTTGTTGGATGCAATCCCGACTGAACCTGCAACTGAAAAATAGATGCTGGTGAATCTCTTGATGCGAGCCACAAATGCAACACATTTTGTTGTCCACAATTCCCATCTTTAGTAATCTATCACTTGTTTGCAGCCTATTCTTCATAGCAAGCCATAGGCAGAATCTATGCTTTGGGATTGAGTATCTGTTCCAAACACCTTTTCTCCACTGCATTTTCAATTCCTGACCACATAAGTCACTACACACTGTCTTAATGCTATGATTCAAGCCTAATCTAGAAAATGCAAAATGTTGTTTGGTTGAACTTCCACTTATGTACGGGGATTTCGATAAACAACTTCTTCCATTTTGTCGAGAACTAAAACTTCTAGGAAGAGCAACTTTCCATGTTTTCGCCAACCTAAAAGCCAACTCCCCACGTTCTTCTATTGTTAGGAACTTCTATTTCCCATGTTTTTCATTATGTTAACCGAACTATGTGAAAAAGCTAATGAAGTTTGGCCTATGAGCTATGCCTAGAGCAGCACGGTTTCAAGCATTTGTTTGTTGCAATTGAATTGTTGGGTCTACGATGTCTTGAATGCCATGACATTGAGGATTATTCCTGTTGGAATGCTGATTTTGTTCCTGTCCAGTGTTGTAACTGTCCATTGATATTTGGCTGTGAATTTGAAATGTATAGTTTGAATGGTTCTCTTTTCAGGCAATATTTGAGAGATTCGATAGAGATCGAAGTGGGAAAATTGATGTACAGGAACTAAGGGATGCTCTTTACAGTTTGGGATTCGCGGTCCCTCCTTCAGTCCTTCAACTTTTGATTTCCCGTTATGACAATGGGAGTGGCCAGAAAGCTCAGCTTAATTTTGATAGCTTTATTGAGTAAGACATCTTGAGACCTACTGCTGTGTGGTATACTAGTCTTTTCCCCCTCATATAGGCCTCTAACCTTGAGTTTTTTTGTTGGGTTTGCAGATGCGGCATGGTTGTAAAGGTGGGCATATAATCCGTTTGCTTGAATTTCTTATTTGTTTCCGCAACTTTCTTAGTTCAGGACACATTGACTAAAGTTCAGTGAGTTTGAAAAGATTTTTTTGCTATAAACAATGGTGATACAATTTACCACAAACATGGTTTAACATTGCTAGTTAGCCGATAATGCTCTGAGTTATTTATCATCGGGTTTCTGAGTTCTCAAGGTTTATGTTGTTTCAAATTACAGGGTTTAACGGAAAAATTCAAAGAGAAGGACACACGTTACACTGGTTCTGCAACCATCAGCTATGATGATTTCATGACAATGGTTCTTCCATATCTTGTAACGTACAATTAACTGAATGTAATTTCATGCTGTTATGATTTTTGTTGGATATGTAATTATGTATTGTTTCTATGAGCATATTTGCTGTAAATGGAGGTAGGTTATTTTTAGGCGGATTTTCCATCTGGTTTGGTGTTGCAAAAATGAATATCTGAATAAAAAGTTTTCCTTTTCAGGAGACCGTCTTAGATATATCAGTTTTTGAGTTGGATGTGTAAATCAGAATCAATGTCAGTTTATGTATTGCACAATTGGTTTTCATATGGTTGTTTCCTGCCTGAGTCCCCA GCTTTCTTGCCTATCTTCTTCCCCAAATTCACTGCTCAATTTTCAAAAATGTCTTCTTTCAATCCTTCTGCACCTCCCATGCCTAATTCATCATCATCTTATTCCTCTAATCCAAACAATTACAACCCTAATTACAGTAATAATTACAATCAAAATCACAATTACCCACCACCGGCCCAAATCAACCATGTGAGCCACCAATCATACTCTACTCCACCTTCTACTTCTAGTCTTCTTCCGTATGGCGGTGGAAACGGCGGCGGAGCATCAAGTTATGGGCACAATTACAACCCTTTTCCACCAGGAACTGACCCCGAAATCATTCGAAGCTTCCAGATGGTGGACCGCGATAACAGCGGTTTTATTGACGATTCTGAGCTTCAGAACGCTCTTTCTTCCGCTTACCACCGCTTCAATCTTAGCACTATTCGTCTACTCATCTTCCTATTCAAGAACCCGACTGAAAAGTCCCTCAAAATCCGTCCAGGGGAATTTGCTGCATTGTGGAGTTGCCTGGGTCAATGGCGTGCAATATTTGAGAGATTCGATAGAGATCGAAGTGGGAAAATTGATGTACAGGAACTAAGGGATGCTCTTTACAGTTTGGGATTCGCGGTCCCTCCTTCAGTCCTTCAACTTTTGATTTCCCGTTATGACAATGGGAGTGGCCAGAAAGCTCAGCTTAATTTTGATAGCTTTATTGAATGCGGCATGGTTGTAAAGGGTTTAACGGAAAAATTCAAAGAGAAGGACACACGTTACACTGGTTCTGCAACCATCAGCTATGATGATTTCATGACAATGGTTCTTCCATATCTTGTAACGTACAATTAACTGAATGTAATTTCATGCTGTTATGATTTTTGTTGGATATGTAATTATGTATTGTTTCTATGAGCATATTTGCTGTAAATGGAGGTAGGTTATTTTTAGGCGGATTTTCCATCTGGTTTGGTGTTGCAAAAATGAATATCTGAATAAAAAGTTTTCCTTTTCAGGAGACCGTCTTAGATATATCAGTTTTTGAGTTGGATGTGTAAATCAGAATCAATGTCAGTTTATGTATTGCACAATTGGTTTTCATATGGTTGTTTCCTGCCTGAGTCCCCA ATGTCTTCTTTCAATCCTTCTGCACCTCCCATGCCTAATTCATCATCATCTTATTCCTCTAATCCAAACAATTACAACCCTAATTACAGTAATAATTACAATCAAAATCACAATTACCCACCACCGGCCCAAATCAACCATGTGAGCCACCAATCATACTCTACTCCACCTTCTACTTCTAGTCTTCTTCCGTATGGCGGTGGAAACGGCGGCGGAGCATCAAGTTATGGGCACAATTACAACCCTTTTCCACCAGGAACTGACCCCGAAATCATTCGAAGCTTCCAGATGGTGGACCGCGATAACAGCGGTTTTATTGACGATTCTGAGCTTCAGAACGCTCTTTCTTCCGCTTACCACCGCTTCAATCTTAGCACTATTCGTCTACTCATCTTCCTATTCAAGAACCCGACTGAAAAGTCCCTCAAAATCCGTCCAGGGGAATTTGCTGCATTGTGGAGTTGCCTGGGTCAATGGCGTGCAATATTTGAGAGATTCGATAGAGATCGAAGTGGGAAAATTGATGTACAGGAACTAAGGGATGCTCTTTACAGTTTGGGATTCGCGGTCCCTCCTTCAGTCCTTCAACTTTTGATTTCCCGTTATGACAATGGGAGTGGCCAGAAAGCTCAGCTTAATTTTGATAGCTTTATTGAATGCGGCATGGTTGTAAAGGGTTTAACGGAAAAATTCAAAGAGAAGGACACACGTTACACTGGTTCTGCAACCATCAGCTATGATGATTTCATGACAATGGTTCTTCCATATCTTGTAACGTACAATTAA MSSFNPSAPPMPNSSSSYSSNPNNYNPNYSNNYNQNHNYPPPAQINHVSHQSYSTPPSTSSLLPYGGGNGGGASSYGHNYNPFPPGTDPEIIRSFQMVDRDNSGFIDDSELQNALSSAYHRFNLSTIRLLIFLFKNPTEKSLKIRPGEFAALWSCLGQWRAIFERFDRDRSGKIDVQELRDALYSLGFAVPPSVLQLLISRYDNGSGQKAQLNFDSFIECGMVVKGLTEKFKEKDTRYTGSATISYDDFMTMVLPYLVTYN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo19341.1 vs. NCBI nr
Match: gi|902126332|gb|KNA04121.1| (hypothetical protein SOVF_202630 [Spinacia oleracea]) HSP 1 Score: 523.9 bits (1348), Expect = 1.700e-145 Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 1
BLAST of Spo19341.1 vs. NCBI nr
Match: gi|731349460|ref|XP_010686002.1| (PREDICTED: probable calcium-binding protein CML48 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 407.5 bits (1046), Expect = 1.700e-110 Identity = 212/266 (79.70%), Postives = 233/266 (87.59%), Query Frame = 1
BLAST of Spo19341.1 vs. NCBI nr
Match: gi|378942579|gb|AFC76102.1| (calcium-dependent protein kinase, partial [Haloxylon ammodendron]) HSP 1 Score: 368.2 bits (944), Expect = 1.200e-98 Identity = 182/227 (80.18%), Postives = 203/227 (89.43%), Query Frame = 1
BLAST of Spo19341.1 vs. NCBI nr
Match: gi|372121976|gb|AEX86943.1| (EFh calcium-binding protein [Haloxylon ammodendron]) HSP 1 Score: 368.2 bits (944), Expect = 1.200e-98 Identity = 182/227 (80.18%), Postives = 203/227 (89.43%), Query Frame = 1
BLAST of Spo19341.1 vs. NCBI nr
Match: gi|970060233|ref|XP_015056876.1| (PREDICTED: probable calcium-binding protein CML48 [Solanum pennellii]) HSP 1 Score: 297.7 bits (761), Expect = 1.900e-77 Identity = 163/264 (61.74%), Postives = 197/264 (74.62%), Query Frame = 1
BLAST of Spo19341.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QC83_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_202630 PE=4 SV=1) HSP 1 Score: 523.9 bits (1348), Expect = 1.200e-145 Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 1
BLAST of Spo19341.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ER20_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g176060 PE=4 SV=1) HSP 1 Score: 407.5 bits (1046), Expect = 1.200e-110 Identity = 212/266 (79.70%), Postives = 233/266 (87.59%), Query Frame = 1
BLAST of Spo19341.1 vs. UniProtKB/TrEMBL
Match: H9ADK2_9CARY (Calcium-dependent protein kinase (Fragment) OS=Haloxylon ammodendron GN=CDPK PE=2 SV=1) HSP 1 Score: 368.2 bits (944), Expect = 8.100e-99 Identity = 182/227 (80.18%), Postives = 203/227 (89.43%), Query Frame = 1
BLAST of Spo19341.1 vs. UniProtKB/TrEMBL
Match: H2ER24_9CARY (EFh calcium-binding protein OS=Haloxylon ammodendron PE=2 SV=1) HSP 1 Score: 368.2 bits (944), Expect = 8.100e-99 Identity = 182/227 (80.18%), Postives = 203/227 (89.43%), Query Frame = 1
BLAST of Spo19341.1 vs. UniProtKB/TrEMBL
Match: M1CHS6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400026341 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.800e-77 Identity = 164/264 (62.12%), Postives = 198/264 (75.00%), Query Frame = 1
BLAST of Spo19341.1 vs. ExPASy Swiss-Prot
Match: CML48_ARATH (Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2) HSP 1 Score: 221.5 bits (563), Expect = 1.100e-56 Identity = 101/180 (56.11%), Postives = 138/180 (76.67%), Query Frame = 1
BLAST of Spo19341.1 vs. ExPASy Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 1.400e-51 Identity = 121/259 (46.72%), Postives = 156/259 (60.23%), Query Frame = 1
BLAST of Spo19341.1 vs. ExPASy Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 2.400e-51 Identity = 122/255 (47.84%), Postives = 159/255 (62.35%), Query Frame = 1
BLAST of Spo19341.1 vs. ExPASy Swiss-Prot
Match: PEF1_XENLA (Peflin OS=Xenopus laevis GN=pef1 PE=1 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 1.800e-30 Identity = 83/209 (39.71%), Postives = 118/209 (56.46%), Query Frame = 1
BLAST of Spo19341.1 vs. ExPASy Swiss-Prot
Match: PEF1_RAT (Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 1.300e-28 Identity = 80/202 (39.60%), Postives = 112/202 (55.45%), Query Frame = 1
BLAST of Spo19341.1 vs. TAIR (Arabidopsis)
Match: AT2G27480.1 (Calcium-binding EF-hand family protein) HSP 1 Score: 221.5 bits (563), Expect = 6.200e-58 Identity = 101/180 (56.11%), Postives = 138/180 (76.67%), Query Frame = 1
BLAST of Spo19341.1 vs. TAIR (Arabidopsis)
Match: AT5G04170.1 (Calcium-binding EF-hand family protein) HSP 1 Score: 204.5 bits (519), Expect = 7.800e-53 Identity = 121/259 (46.72%), Postives = 156/259 (60.23%), Query Frame = 1
BLAST of Spo19341.1 vs. TAIR (Arabidopsis)
Match: AT3G10300.3 (Calcium-binding EF-hand family protein) HSP 1 Score: 203.8 bits (517), Expect = 1.300e-52 Identity = 122/255 (47.84%), Postives = 159/255 (62.35%), Query Frame = 1
BLAST of Spo19341.1 vs. TAIR (Arabidopsis)
Match: AT3G03400.1 (EF hand calcium-binding protein family) HSP 1 Score: 48.5 bits (114), Expect = 7.200e-6 Identity = 30/86 (34.88%), Postives = 44/86 (51.16%), Query Frame = 1
BLAST of Spo19341.1 vs. TAIR (Arabidopsis)
Match: AT4G37010.2 (centrin 2) HSP 1 Score: 48.5 bits (114), Expect = 7.200e-6 Identity = 28/77 (36.36%), Postives = 40/77 (51.95%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo19341.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo19341.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo19341.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo19341.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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